HEADER PROTEIN BINDING 15-MAR-09 3GMW TITLE CRYSTAL STRUCTURE OF BETA-LACTAMSE INHIBITORY PROTEIN-I (BLIP-I) IN TITLE 2 COMPLEX WITH TEM-1 BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-LACTAMASE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-LACTAMASE INHIBITORY PROTEIN BLIP-I; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA SP. SFLU5; SOURCE 3 ORGANISM_TAXID: 299586; SOURCE 4 STRAIN: CB86134; SOURCE 5 GENE: AMP, BLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC118; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STREPTOMYCES EXFOLIATUS; SOURCE 13 ORGANISM_COMMON: STREPTOMYCES HYDROGENANS; SOURCE 14 ORGANISM_TAXID: 1905; SOURCE 15 STRAIN: SMF19; SOURCE 16 GENE: BLIA; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET30A(+) KEYWDS PROTEIN-PROTEIN COMPLEX, ANTIBIOTIC RESISTANCE, HYDROLASE, PLASMID, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.C.LIM,M.GRETES,N.C.J.STRYNADKA REVDAT 4 01-NOV-17 3GMW 1 REMARK REVDAT 3 02-JUN-09 3GMW 1 JRNL REVDAT 2 14-APR-09 3GMW 1 JRNL REVDAT 1 31-MAR-09 3GMW 0 JRNL AUTH M.GRETES,D.C.LIM,L.DE CASTRO,S.E.JENSEN,S.G.KANG,K.J.LEE, JRNL AUTH 2 N.C.STRYNADKA JRNL TITL INSIGHTS INTO POSITIVE AND NEGATIVE REQUIREMENTS FOR JRNL TITL 2 PROTEIN-PROTEIN INTERACTIONS BY CRYSTALLOGRAPHIC ANALYSIS OF JRNL TITL 3 THE BETA-LACTAMASE INHIBITORY PROTEINS BLIP, BLIP-I, AND JRNL TITL 4 BLP. JRNL REF J.MOL.BIOL. V. 389 289 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19332077 JRNL DOI 10.1016/J.JMB.2009.03.058 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 46665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : -0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6631 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9000 ; 1.970 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 6.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;37.540 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1111 ;16.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 985 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5045 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3212 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4540 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 430 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4133 ; 1.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6625 ; 1.881 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2498 ; 3.061 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2371 ; 4.605 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49303 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 105.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 14.4380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.11100 REMARK 200 R SYM FOR SHELL (I) : 0.11100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML OF EACH PROTEIN IN 50 MM REMARK 280 TRISCL, PH 8.0, 0.05 M NACL MIXED 1:1 WITH 0.2 M POTASSIUM REMARK 280 PHOSPHATE, PH 4.7, 20% PEG 3350, HANGING DROP VAPOR BATCH, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 177 O HOH D 354 1.87 REMARK 500 O HOH D 260 O HOH D 376 1.99 REMARK 500 O HOH D 186 O HOH D 347 2.01 REMARK 500 O HOH B 313 O HOH B 338 2.03 REMARK 500 OE2 GLU B 124 O HOH B 210 2.06 REMARK 500 CB LEU A 30 CB LEU C 30 2.09 REMARK 500 O HOH D 232 O HOH D 348 2.09 REMARK 500 O ASP C 176 O HOH C 375 2.11 REMARK 500 OE2 GLU A 104 NH1 ARG B 154 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 127 CD1 TYR B 127 CE1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU C 49 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP D 49 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 69 -148.09 51.16 REMARK 500 TYR A 105 77.91 72.06 REMARK 500 ALA A 172 37.57 71.78 REMARK 500 ASN A 175 -7.11 65.40 REMARK 500 LEU A 220 -121.18 -102.53 REMARK 500 ALA A 227 151.26 -45.95 REMARK 500 ALA A 268 -176.89 -45.77 REMARK 500 TYR B 71 10.54 80.95 REMARK 500 SER B 79 10.55 -163.02 REMARK 500 ASN C 52 -73.93 -54.01 REMARK 500 MET C 69 -144.74 52.57 REMARK 500 TYR C 105 77.03 67.81 REMARK 500 ALA C 172 36.34 75.67 REMARK 500 ASN C 175 -5.56 62.16 REMARK 500 ASP C 214 140.91 -36.01 REMARK 500 LEU C 220 -126.38 -108.40 REMARK 500 ALA C 268 177.81 -33.63 REMARK 500 ARG C 275 -67.65 -18.05 REMARK 500 SER D 79 7.45 -169.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 28 THR A 29 -147.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GMU RELATED DB: PDB REMARK 900 RELATED ID: 3GMV RELATED DB: PDB REMARK 900 RELATED ID: 3GMX RELATED DB: PDB REMARK 900 RELATED ID: 3GMY RELATED DB: PDB DBREF 3GMW A 28 288 UNP A5PHA6 A5PHA6_9ESCH 26 286 DBREF 3GMW B 2 157 UNP Q9KJ90 Q9KJ90_STREX 31 186 DBREF 3GMW C 28 288 UNP A5PHA6 A5PHA6_9ESCH 26 286 DBREF 3GMW D 2 157 UNP Q9KJ90 Q9KJ90_STREX 31 186 SEQRES 1 A 261 GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP GLN LEU SEQRES 2 A 261 GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU ASN SER SEQRES 3 A 261 GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU ARG PHE SEQRES 4 A 261 PRO MET MET SER THR PHE LYS VAL LEU LEU CYS GLY ALA SEQRES 5 A 261 VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN LEU GLY SEQRES 6 A 261 ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL GLU TYR SEQRES 7 A 261 SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY MET THR SEQRES 8 A 261 VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SER ASP SEQRES 9 A 261 ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE GLY GLY SEQRES 10 A 261 PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET GLY ASP SEQRES 11 A 261 HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU LEU ASN SEQRES 12 A 261 GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR MET PRO SEQRES 13 A 261 VAL ALA MET ALA THR THR LEU ARG LYS LEU LEU THR GLY SEQRES 14 A 261 GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU ILE ASP SEQRES 15 A 261 TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU LEU ARG SEQRES 16 A 261 SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP LYS SER SEQRES 17 A 261 GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE ALA ALA SEQRES 18 A 261 LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL VAL ILE SEQRES 19 A 261 TYR THR THR GLY SER GLN ALA THR MET ASP GLU ARG ASN SEQRES 20 A 261 ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE LYS HIS SEQRES 21 A 261 TRP SEQRES 1 B 156 SER GLY PHE SER ALA GLU LYS TYR GLU GLN ILE GLN PHE SEQRES 2 B 156 GLY MET THR PHE ASP GLU VAL TRP GLU ILE GLY GLY GLY SEQRES 3 B 156 GLU ALA ALA CYS ASP THR GLY GLY VAL ILE GLY ASP SER SEQRES 4 B 156 ILE LEU CYS PHE THR GLU SER GLY ASP TYR ALA PRO TYR SEQRES 5 B 156 GLY GLY PHE SER PHE THR ASP GLU GLY GLU LEU TRP SER SEQRES 6 B 156 LYS ARG ASN GLU TYR LEU TYR LYS ALA LYS THR PRO SER SEQRES 7 B 156 VAL LYS LEU SER HIS TYR ASN ARG THR ALA LEU GLY MET SEQRES 8 B 156 THR GLU ALA GLN LEU TRP ALA ALA VAL PRO LYS ASP SER SEQRES 9 B 156 CYS VAL SER GLN GLY GLU SER TYR PRO ASN TRP PRO ALA SEQRES 10 B 156 LYS THR GLY PHE GLU GLU LYS TYR TYR CYS ALA ALA ALA SEQRES 11 B 156 THR GLY LEU PHE PRO PRO SER ALA SER PHE HIS LEU THR SEQRES 12 B 156 ASP GLY VAL LEU THR TYR ARG TYR GLN ARG SER LEU THR SEQRES 1 C 261 GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP GLN LEU SEQRES 2 C 261 GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU ASN SER SEQRES 3 C 261 GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU ARG PHE SEQRES 4 C 261 PRO MET MET SER THR PHE LYS VAL LEU LEU CYS GLY ALA SEQRES 5 C 261 VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN LEU GLY SEQRES 6 C 261 ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL GLU TYR SEQRES 7 C 261 SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY MET THR SEQRES 8 C 261 VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SER ASP SEQRES 9 C 261 ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE GLY GLY SEQRES 10 C 261 PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET GLY ASP SEQRES 11 C 261 HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU LEU ASN SEQRES 12 C 261 GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR MET PRO SEQRES 13 C 261 VAL ALA MET ALA THR THR LEU ARG LYS LEU LEU THR GLY SEQRES 14 C 261 GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU ILE ASP SEQRES 15 C 261 TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU LEU ARG SEQRES 16 C 261 SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP LYS SER SEQRES 17 C 261 GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE ALA ALA SEQRES 18 C 261 LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL VAL ILE SEQRES 19 C 261 TYR THR THR GLY SER GLN ALA THR MET ASP GLU ARG ASN SEQRES 20 C 261 ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE LYS HIS SEQRES 21 C 261 TRP SEQRES 1 D 156 SER GLY PHE SER ALA GLU LYS TYR GLU GLN ILE GLN PHE SEQRES 2 D 156 GLY MET THR PHE ASP GLU VAL TRP GLU ILE GLY GLY GLY SEQRES 3 D 156 GLU ALA ALA CYS ASP THR GLY GLY VAL ILE GLY ASP SER SEQRES 4 D 156 ILE LEU CYS PHE THR GLU SER GLY ASP TYR ALA PRO TYR SEQRES 5 D 156 GLY GLY PHE SER PHE THR ASP GLU GLY GLU LEU TRP SER SEQRES 6 D 156 LYS ARG ASN GLU TYR LEU TYR LYS ALA LYS THR PRO SER SEQRES 7 D 156 VAL LYS LEU SER HIS TYR ASN ARG THR ALA LEU GLY MET SEQRES 8 D 156 THR GLU ALA GLN LEU TRP ALA ALA VAL PRO LYS ASP SER SEQRES 9 D 156 CYS VAL SER GLN GLY GLU SER TYR PRO ASN TRP PRO ALA SEQRES 10 D 156 LYS THR GLY PHE GLU GLU LYS TYR TYR CYS ALA ALA ALA SEQRES 11 D 156 THR GLY LEU PHE PRO PRO SER ALA SER PHE HIS LEU THR SEQRES 12 D 156 ASP GLY VAL LEU THR TYR ARG TYR GLN ARG SER LEU THR HET PO4 B 1 5 HET PO4 B 158 5 HET PO4 C 2 5 HET PO4 D 158 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *372(H2 O) HELIX 1 1 GLU A 28 GLY A 41 1 14 HELIX 2 2 THR A 71 ALA A 86 1 16 HELIX 3 3 SER A 98 LEU A 102 5 5 HELIX 4 4 VAL A 108 LEU A 113 5 6 HELIX 5 5 VAL A 119 MET A 129 1 11 HELIX 6 6 ASP A 131 GLY A 143 1 13 HELIX 7 7 GLY A 144 MET A 155 1 12 HELIX 8 8 PRO A 167 GLU A 171 5 5 HELIX 9 9 MET A 182 GLY A 196 1 15 HELIX 10 10 THR A 200 ALA A 213 1 14 HELIX 11 11 LEU A 220 LEU A 225 5 6 HELIX 12 12 THR A 269 HIS A 287 1 19 HELIX 13 13 SER B 5 ILE B 12 1 8 HELIX 14 14 THR B 17 GLY B 26 1 10 HELIX 15 15 GLY B 26 ALA B 30 1 5 HELIX 16 16 GLY B 35 GLY B 38 5 4 HELIX 17 17 LYS B 81 ARG B 87 1 7 HELIX 18 18 THR B 93 VAL B 101 1 9 HELIX 19 19 PRO B 102 ASP B 104 5 3 HELIX 20 20 GLU C 28 GLY C 41 1 14 HELIX 21 21 THR C 71 ALA C 86 1 16 HELIX 22 22 SER C 98 LEU C 102 5 5 HELIX 23 23 VAL C 108 LEU C 113 5 6 HELIX 24 24 VAL C 119 MET C 129 1 11 HELIX 25 25 ASP C 131 GLY C 143 1 13 HELIX 26 26 GLY C 144 ASN C 154 1 11 HELIX 27 27 PRO C 167 GLU C 171 5 5 HELIX 28 28 MET C 182 GLY C 196 1 15 HELIX 29 29 THR C 200 ALA C 213 1 14 HELIX 30 30 LEU C 220 LEU C 225 5 6 HELIX 31 31 THR C 269 HIS C 287 1 19 HELIX 32 32 SER D 5 ILE D 12 1 8 HELIX 33 33 THR D 17 GLY D 26 1 10 HELIX 34 34 GLY D 26 ALA D 30 1 5 HELIX 35 35 GLY D 34 GLY D 38 5 5 HELIX 36 36 LYS D 81 ARG D 87 1 7 HELIX 37 37 THR D 93 VAL D 101 1 9 HELIX 38 38 PRO D 102 ASP D 104 5 3 SHEET 1 A10 PHE A 230 ALA A 237 0 SHEET 2 A10 ARG A 243 GLY A 250 -1 O ALA A 248 N ALA A 232 SHEET 3 A10 ARG A 257 THR A 264 -1 O ILE A 261 N ILE A 245 SHEET 4 A10 ARG A 43 ASP A 50 -1 N LEU A 49 O ILE A 258 SHEET 5 A10 ILE A 56 PHE A 60 -1 O LEU A 57 N GLU A 48 SHEET 6 A10 ILE C 56 PHE C 60 -1 O SER C 59 N SER A 59 SHEET 7 A10 ARG C 43 ASP C 50 -1 N GLU C 48 O LEU C 57 SHEET 8 A10 ARG C 257 THR C 264 -1 O ILE C 258 N LEU C 49 SHEET 9 A10 ARG C 243 GLY C 250 -1 N LEU C 249 O ARG C 257 SHEET 10 A10 PHE C 230 ALA C 237 -1 N PHE C 230 O GLY C 250 SHEET 1 B 2 PHE A 66 PRO A 67 0 SHEET 2 B 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 C 2 ARG A 94 ILE A 95 0 SHEET 2 C 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 D 8 CYS B 31 THR B 33 0 SHEET 2 D 8 ILE B 41 PHE B 44 -1 O LEU B 42 N ASP B 32 SHEET 3 D 8 TYR B 53 PHE B 58 -1 O PHE B 56 N ILE B 41 SHEET 4 D 8 LEU B 64 GLU B 70 -1 O ARG B 68 N GLY B 55 SHEET 5 D 8 CYS B 106 SER B 112 -1 O GLU B 111 N LYS B 67 SHEET 6 D 8 GLU B 123 ALA B 129 -1 O LYS B 125 N GLN B 109 SHEET 7 D 8 SER B 138 THR B 144 -1 O ALA B 139 N CYS B 128 SHEET 8 D 8 VAL B 147 ARG B 154 -1 O THR B 149 N HIS B 142 SHEET 1 E 2 PHE C 66 PRO C 67 0 SHEET 2 E 2 THR C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 F 2 ARG C 94 ILE C 95 0 SHEET 2 F 2 MET C 117 THR C 118 -1 O MET C 117 N ILE C 95 SHEET 1 G 8 CYS D 31 ASP D 32 0 SHEET 2 G 8 ILE D 41 PHE D 44 -1 O LEU D 42 N ASP D 32 SHEET 3 G 8 TYR D 53 PHE D 58 -1 O GLY D 54 N CYS D 43 SHEET 4 G 8 LEU D 64 GLU D 70 -1 O ARG D 68 N GLY D 55 SHEET 5 G 8 CYS D 106 SER D 112 -1 O GLU D 111 N LYS D 67 SHEET 6 G 8 GLU D 123 ALA D 129 -1 O LYS D 125 N GLN D 109 SHEET 7 G 8 SER D 138 THR D 144 -1 O PHE D 141 N TYR D 126 SHEET 8 G 8 VAL D 147 ARG D 154 -1 O TYR D 152 N SER D 140 SSBOND 1 CYS A 77 CYS A 123 1555 1555 2.05 SSBOND 2 CYS B 31 CYS B 43 1555 1555 2.03 SSBOND 3 CYS B 106 CYS B 128 1555 1555 2.06 SSBOND 4 CYS C 77 CYS C 123 1555 1555 2.07 SSBOND 5 CYS D 31 CYS D 43 1555 1555 2.05 SSBOND 6 CYS D 106 CYS D 128 1555 1555 2.08 CISPEP 1 GLU A 166 PRO A 167 0 4.79 CISPEP 2 TRP B 116 PRO B 117 0 11.94 CISPEP 3 GLU C 166 PRO C 167 0 1.35 CISPEP 4 TRP D 116 PRO D 117 0 15.12 SITE 1 AC1 6 GLN B 109 TYR B 126 SER B 140 PHE B 141 SITE 2 AC1 6 HIS B 142 HOH B 379 SITE 1 AC2 4 THR B 59 ASP B 60 GLU B 61 HOH B 304 SITE 1 AC3 3 GLY C 92 ARG C 120 HOH C 294 SITE 1 AC4 5 GLN D 109 TYR D 126 SER D 140 HIS D 142 SITE 2 AC4 5 HOH D 387 CRYST1 45.418 48.757 106.137 103.24 91.29 90.18 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022018 0.000069 0.000526 0.00000 SCALE2 0.000000 0.020510 0.004829 0.00000 SCALE3 0.000000 0.000000 0.009682 0.00000