HEADER PROTEIN TRANSPORT 16-MAR-09 3GN9 TITLE CRYSTAL STRUCTURE OF THE MAJOR PSEUDOPILIN FROM THE TYPE 2 SECRETION TITLE 2 SYSTEM OF VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II SECRETORY PATHWAY, PSEUDOPILIN EPSG; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 26-137; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: MO6-24; SOURCE 5 GENE: EPSG, VV1_0874; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-NT KEYWDS GENERAL SECRETORY PATHWAY, MAJOR PILIN, PROTEIN TRANSPORT, COMPLEX, KEYWDS 2 METHYLATION EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,M.D.GRAY,A.KREGER,S.TURLEY,M.SANDKVIST,W.G.J.HOL REVDAT 5 06-SEP-23 3GN9 1 REMARK SEQADV REVDAT 4 01-NOV-17 3GN9 1 REMARK REVDAT 3 13-JUL-11 3GN9 1 VERSN REVDAT 2 29-SEP-09 3GN9 1 JRNL REVDAT 1 28-JUL-09 3GN9 0 JRNL AUTH K.V.KOROTKOV,M.D.GRAY,A.KREGER,S.TURLEY,M.SANDKVIST,W.G.HOL JRNL TITL CALCIUM IS ESSENTIAL FOR THE MAJOR PSEUDOPILIN IN THE TYPE 2 JRNL TITL 2 SECRETION SYSTEM. JRNL REF J.BIOL.CHEM. V. 284 25466 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19640838 JRNL DOI 10.1074/JBC.C109.037655 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 44693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3090 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -3.27000 REMARK 3 B33 (A**2) : 4.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2722 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1828 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3700 ; 1.249 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4502 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 5.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;34.704 ;26.620 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;12.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;24.258 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3139 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 0.571 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 693 ; 0.151 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2698 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 1.749 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 993 ; 2.739 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5240 -8.6180 -4.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.0722 REMARK 3 T33: 0.0591 T12: -0.0509 REMARK 3 T13: -0.0267 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.5032 L22: 5.8915 REMARK 3 L33: 1.5945 L12: 3.7635 REMARK 3 L13: 1.2286 L23: 0.4982 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0709 S13: 0.2121 REMARK 3 S21: -0.1596 S22: 0.0289 S23: 0.5604 REMARK 3 S31: 0.2648 S32: -0.2334 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0910 -12.9400 -11.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1484 REMARK 3 T33: 0.0608 T12: -0.0862 REMARK 3 T13: -0.0567 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 5.1112 L22: 6.7314 REMARK 3 L33: 4.0987 L12: 3.6495 REMARK 3 L13: 2.0593 L23: 1.9562 REMARK 3 S TENSOR REMARK 3 S11: -0.1877 S12: 0.4069 S13: 0.1296 REMARK 3 S21: -0.6994 S22: 0.1281 S23: 0.5420 REMARK 3 S31: 0.3564 S32: -0.4020 S33: 0.0595 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2600 17.9680 -2.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0584 REMARK 3 T33: 0.2106 T12: 0.0589 REMARK 3 T13: -0.0511 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 6.7081 L22: 3.6757 REMARK 3 L33: 1.5273 L12: -3.4014 REMARK 3 L13: 0.2479 L23: 0.2206 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.1230 S13: 0.3996 REMARK 3 S21: -0.1198 S22: -0.2103 S23: -0.0095 REMARK 3 S31: -0.2793 S32: -0.2755 S33: 0.1710 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0580 17.4660 -2.7790 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1663 REMARK 3 T33: 0.3187 T12: 0.0884 REMARK 3 T13: -0.0584 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 9.5988 L22: 4.4676 REMARK 3 L33: 1.7650 L12: -3.3725 REMARK 3 L13: -0.0049 L23: 0.7174 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.2626 S13: -0.3720 REMARK 3 S21: -0.2159 S22: -0.2002 S23: 0.7985 REMARK 3 S31: -0.1278 S32: -0.4876 S33: 0.1317 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 27 C 115 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5940 7.6750 -23.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.2653 REMARK 3 T33: 0.1414 T12: 0.0432 REMARK 3 T13: 0.0344 T23: 0.1920 REMARK 3 L TENSOR REMARK 3 L11: 1.6571 L22: 3.2774 REMARK 3 L33: 6.2149 L12: -0.7396 REMARK 3 L13: 0.3592 L23: -1.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.5858 S13: 0.4469 REMARK 3 S21: -0.6909 S22: -0.0360 S23: -0.0745 REMARK 3 S31: 0.1486 S32: -0.2889 S33: -0.0966 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 116 C 137 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5910 13.5340 -33.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.7668 T22: 1.0057 REMARK 3 T33: 0.3450 T12: 0.3202 REMARK 3 T13: -0.1983 T23: 0.2747 REMARK 3 L TENSOR REMARK 3 L11: 16.4980 L22: 12.5642 REMARK 3 L33: 12.5590 L12: 8.9630 REMARK 3 L13: -5.4769 L23: -8.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.3662 S13: -0.1096 REMARK 3 S21: -1.2180 S22: 0.4612 S23: 0.4888 REMARK 3 S31: 0.0931 S32: -2.1731 S33: -0.4446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. THE FRIEDEL PAIRS WERE USED IN REMARK 3 PHASING. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 3. U VALUES: RESIDUAL ONLY. REMARK 4 REMARK 4 3GN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FU1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.95M DL-MALIC ACID PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.09000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.09000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS CRYSTAL FORM CONTAINS THREE MONOMERS, THAT ARE NOT REMARK 300 RELATED TO THE BIOLOGICAL FORM. THE BIOLOGICAL UNIT IS A FIBER. IT REMARK 300 IS UNKNOWN AT THE MOMENT HOW INDIVIDUAL SUBUNITS ARE ASSEMBLED IN REMARK 300 VIVO. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 MET A 25 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 MET B 25 REMARK 465 GLY C 23 REMARK 465 ALA C 24 REMARK 465 MET C 25 REMARK 465 GLY C 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 -10.53 81.17 REMARK 500 SER A 73 64.97 60.12 REMARK 500 ASN A 81 108.47 -44.73 REMARK 500 SER B 55 -10.12 81.11 REMARK 500 ASN B 78 45.51 -145.51 REMARK 500 SER C 55 -3.26 78.15 REMARK 500 SER C 73 66.68 61.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 113 O REMARK 620 2 ASP A 116 OD1 70.5 REMARK 620 3 GLN A 118 O 85.9 76.3 REMARK 620 4 GLY A 120 O 179.0 109.0 93.1 REMARK 620 5 ALA A 125 O 91.9 89.3 165.4 89.0 REMARK 620 6 ASP A 127 OD1 76.3 143.9 87.8 103.9 105.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 113 O REMARK 620 2 ASP B 116 OD1 77.4 REMARK 620 3 GLN B 118 O 105.1 83.0 REMARK 620 4 GLY B 120 O 163.1 116.7 86.7 REMARK 620 5 ALA B 125 O 89.0 89.4 162.0 82.2 REMARK 620 6 ASP B 127 OD1 87.2 163.7 96.2 79.4 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU C 113 O REMARK 620 2 GLN C 118 O 77.3 REMARK 620 3 GLY C 120 O 165.6 115.3 REMARK 620 4 ALA C 125 O 89.6 155.9 80.9 REMARK 620 5 ASP C 127 OD1 93.0 100.6 78.1 100.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FU1 RELATED DB: PDB REMARK 900 STRUCTURE OF A HOMOLOGOUS PROTEIN FROM VIBRIO CHOLERAE REMARK 900 RELATED ID: 3G20 RELATED DB: PDB REMARK 900 STRUCTURE OF A HOMOLOGOUS PROTEIN FROM ENTEROTOXIGENIC ESCHERICHIA REMARK 900 COLI REMARK 900 RELATED ID: 1T92 RELATED DB: PDB REMARK 900 STRUCTURE OF A HOMOLOGOUS PROTEIN FROM KLEBSIELLA PNEUMONIAE DBREF 3GN9 A 26 137 UNP Q8DDT3 Q8DDT3_VIBVU 36 147 DBREF 3GN9 B 26 137 UNP Q8DDT3 Q8DDT3_VIBVU 36 147 DBREF 3GN9 C 26 137 UNP Q8DDT3 Q8DDT3_VIBVU 36 147 SEQADV 3GN9 GLY A 23 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 ALA A 24 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 MET A 25 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 GLY B 23 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 ALA B 24 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 MET B 25 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 GLY C 23 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 ALA C 24 UNP Q8DDT3 EXPRESSION TAG SEQADV 3GN9 MET C 25 UNP Q8DDT3 EXPRESSION TAG SEQRES 1 A 115 GLY ALA MET GLY ASN LYS GLU LYS ALA ASP GLN GLN LYS SEQRES 2 A 115 ALA ILE THR ASP ILE VAL ALA LEU GLU ASN ALA LEU ASP SEQRES 3 A 115 MET TYR LYS LEU ASP ASN SER VAL TYR PRO THR THR ASP SEQRES 4 A 115 GLN GLY LEU GLU ALA LEU VAL THR LYS PRO SER SER PRO SEQRES 5 A 115 GLU PRO ARG ASN TYR ARG ASN GLY GLY TYR ILE LYS ARG SEQRES 6 A 115 LEU PRO LYS ASP PRO TRP GLY ASN GLU TYR GLN TYR MET SEQRES 7 A 115 SER PRO GLY ASP LYS GLY THR ILE ASP ILE PHE THR LEU SEQRES 8 A 115 GLY ALA ASP GLY GLN GLU GLY GLY GLU GLY ALA ALA ALA SEQRES 9 A 115 ASP ILE GLY ASN TRP ASN MET GLN ASP PHE GLN SEQRES 1 B 115 GLY ALA MET GLY ASN LYS GLU LYS ALA ASP GLN GLN LYS SEQRES 2 B 115 ALA ILE THR ASP ILE VAL ALA LEU GLU ASN ALA LEU ASP SEQRES 3 B 115 MET TYR LYS LEU ASP ASN SER VAL TYR PRO THR THR ASP SEQRES 4 B 115 GLN GLY LEU GLU ALA LEU VAL THR LYS PRO SER SER PRO SEQRES 5 B 115 GLU PRO ARG ASN TYR ARG ASN GLY GLY TYR ILE LYS ARG SEQRES 6 B 115 LEU PRO LYS ASP PRO TRP GLY ASN GLU TYR GLN TYR MET SEQRES 7 B 115 SER PRO GLY ASP LYS GLY THR ILE ASP ILE PHE THR LEU SEQRES 8 B 115 GLY ALA ASP GLY GLN GLU GLY GLY GLU GLY ALA ALA ALA SEQRES 9 B 115 ASP ILE GLY ASN TRP ASN MET GLN ASP PHE GLN SEQRES 1 C 115 GLY ALA MET GLY ASN LYS GLU LYS ALA ASP GLN GLN LYS SEQRES 2 C 115 ALA ILE THR ASP ILE VAL ALA LEU GLU ASN ALA LEU ASP SEQRES 3 C 115 MET TYR LYS LEU ASP ASN SER VAL TYR PRO THR THR ASP SEQRES 4 C 115 GLN GLY LEU GLU ALA LEU VAL THR LYS PRO SER SER PRO SEQRES 5 C 115 GLU PRO ARG ASN TYR ARG ASN GLY GLY TYR ILE LYS ARG SEQRES 6 C 115 LEU PRO LYS ASP PRO TRP GLY ASN GLU TYR GLN TYR MET SEQRES 7 C 115 SER PRO GLY ASP LYS GLY THR ILE ASP ILE PHE THR LEU SEQRES 8 C 115 GLY ALA ASP GLY GLN GLU GLY GLY GLU GLY ALA ALA ALA SEQRES 9 C 115 ASP ILE GLY ASN TRP ASN MET GLN ASP PHE GLN HET CA A 201 1 HET MLT A 1 9 HET CA B 201 1 HET CA C 201 1 HET MLT C 1 9 HETNAM CA CALCIUM ION HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 4 CA 3(CA 2+) FORMUL 5 MLT 2(C4 H6 O5) FORMUL 9 HOH *266(H2 O) HELIX 1 1 GLY A 26 SER A 55 1 30 HELIX 2 2 GLY A 63 VAL A 68 5 6 HELIX 3 3 GLU A 122 ALA A 126 5 5 HELIX 4 4 ASN A 132 GLN A 137 5 6 HELIX 5 5 GLY B 26 SER B 55 1 30 HELIX 6 6 GLY B 63 VAL B 68 5 6 HELIX 7 7 GLU B 122 ALA B 126 5 5 HELIX 8 8 ASN B 132 PHE B 136 5 5 HELIX 9 9 ASN C 27 SER C 55 1 29 HELIX 10 10 GLY C 63 VAL C 68 5 6 HELIX 11 11 GLU C 122 ALA C 126 5 5 SHEET 1 A 3 GLN A 98 MET A 100 0 SHEET 2 A 3 ASP A 109 THR A 112 -1 O PHE A 111 N GLN A 98 SHEET 3 A 3 ILE A 128 GLY A 129 -1 O ILE A 128 N THR A 112 SHEET 1 B 3 GLN B 98 MET B 100 0 SHEET 2 B 3 ASP B 109 THR B 112 -1 O PHE B 111 N GLN B 98 SHEET 3 B 3 ILE B 128 GLY B 129 -1 O ILE B 128 N THR B 112 SHEET 1 C 3 GLN C 98 MET C 100 0 SHEET 2 C 3 ASP C 109 THR C 112 -1 O PHE C 111 N GLN C 98 SHEET 3 C 3 ILE C 128 GLY C 129 -1 O ILE C 128 N THR C 112 LINK O LEU A 113 CA CA A 201 1555 1555 2.30 LINK OD1 ASP A 116 CA CA A 201 1555 1555 2.55 LINK O GLN A 118 CA CA A 201 1555 1555 2.24 LINK O GLY A 120 CA CA A 201 1555 1555 2.41 LINK O ALA A 125 CA CA A 201 1555 1555 2.18 LINK OD1 ASP A 127 CA CA A 201 1555 1555 2.42 LINK O LEU B 113 CA CA B 201 1555 1555 2.12 LINK OD1 ASP B 116 CA CA B 201 1555 1555 2.53 LINK O GLN B 118 CA CA B 201 1555 1555 2.18 LINK O GLY B 120 CA CA B 201 1555 1555 2.46 LINK O ALA B 125 CA CA B 201 1555 1555 2.33 LINK OD1 ASP B 127 CA CA B 201 1555 1555 2.33 LINK O LEU C 113 CA CA C 201 1555 1555 2.38 LINK O GLN C 118 CA CA C 201 1555 1555 2.33 LINK O GLY C 120 CA CA C 201 1555 1555 2.38 LINK O ALA C 125 CA CA C 201 1555 1555 2.13 LINK OD1 ASP C 127 CA CA C 201 1555 1555 2.46 CISPEP 1 SER A 73 PRO A 74 0 3.44 CISPEP 2 SER A 101 PRO A 102 0 3.01 CISPEP 3 SER B 73 PRO B 74 0 1.57 CISPEP 4 SER B 101 PRO B 102 0 3.79 CISPEP 5 SER C 73 PRO C 74 0 -1.15 CISPEP 6 SER C 101 PRO C 102 0 2.04 SITE 1 AC1 6 LEU A 113 ASP A 116 GLN A 118 GLY A 120 SITE 2 AC1 6 ALA A 125 ASP A 127 SITE 1 AC2 8 ARG A 87 PRO A 89 LYS A 90 ASP A 91 SITE 2 AC2 8 HOH A 182 ARG B 87 PRO B 89 LYS B 90 SITE 1 AC3 6 LEU B 113 ASP B 116 GLN B 118 GLY B 120 SITE 2 AC3 6 ALA B 125 ASP B 127 SITE 1 AC4 5 LEU C 113 GLN C 118 GLY C 120 ALA C 125 SITE 2 AC4 5 ASP C 127 SITE 1 AC5 8 HOH A 8 SER A 55 ARG A 77 ARG B 77 SITE 2 AC5 8 HOH B 191 SER C 55 VAL C 56 ARG C 77 CRYST1 100.180 104.510 55.410 90.00 106.16 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009982 0.000000 0.002892 0.00000 SCALE2 0.000000 0.009568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018789 0.00000