HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-MAR-09 3GNJ TITLE THE CRYSTAL STRUCTURE OF A THIOREDOXIN-RELATED PROTEIN FROM TITLE 2 DESULFITOBACTERIUM HAFNIENSE DCB COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE DCB-2; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB; SOURCE 5 GENE: DESULFITOBACTERIUM HAFNIENSE, DHAF_4889; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC92103, THIOREDOXIN, DESULFITOBACTERIUM HAFNIENSE DCB, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,L.VOLKART,M.GU,J.N.KINNEY,G.BABNIGG,C.KERFELD,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3GNJ 1 VERSN REVDAT 2 26-MAY-09 3GNJ 1 AUTHOR REVDAT 1 12-MAY-09 3GNJ 0 JRNL AUTH K.TAN,L.VOLKART,M.GU,J.N.KINNEY,G.BABNIGG,C.KERFELD, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A THIOREDOXIN-RELATED PROTEIN FROM JRNL TITL 2 DESULFITOBACTERIUM HAFNIENSE DCB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3706 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4989 ; 1.685 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;39.207 ;25.911 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;19.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2204 ; 0.861 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3560 ; 1.588 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 2.950 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 4.284 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3330 33.5980 37.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0643 REMARK 3 T33: 0.0125 T12: -0.0170 REMARK 3 T13: -0.0140 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.7249 L22: 4.8884 REMARK 3 L33: 3.1056 L12: 1.1560 REMARK 3 L13: -0.3701 L23: -0.0411 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.2251 S13: -0.2161 REMARK 3 S21: 0.1533 S22: -0.1576 S23: -0.0750 REMARK 3 S31: 0.0270 S32: 0.0762 S33: 0.0768 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0220 51.5980 34.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0631 REMARK 3 T33: 0.1582 T12: -0.0124 REMARK 3 T13: 0.0131 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 4.9795 L22: 3.7828 REMARK 3 L33: 1.8433 L12: 0.0650 REMARK 3 L13: 0.8977 L23: 0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.3155 S12: -0.0166 S13: 0.3201 REMARK 3 S21: -0.0749 S22: -0.2425 S23: -0.4051 REMARK 3 S31: 0.1311 S32: 0.1258 S33: -0.0730 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -2 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7380 36.7090 71.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.0498 REMARK 3 T33: 0.0327 T12: -0.0087 REMARK 3 T13: -0.0378 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.1966 L22: 5.3240 REMARK 3 L33: 2.8695 L12: 1.5598 REMARK 3 L13: -0.0412 L23: -0.2899 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.1708 S13: 0.0121 REMARK 3 S21: 0.3323 S22: -0.1579 S23: -0.1174 REMARK 3 S31: 0.0684 S32: 0.0423 S33: 0.1693 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 108 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5750 54.5060 67.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0619 REMARK 3 T33: 0.1784 T12: 0.0006 REMARK 3 T13: -0.0274 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.2164 L22: 3.5580 REMARK 3 L33: 1.8740 L12: 0.3989 REMARK 3 L13: 0.7132 L23: 0.2081 REMARK 3 S TENSOR REMARK 3 S11: 0.1664 S12: 0.0711 S13: -0.1831 REMARK 3 S21: -0.0703 S22: 0.0235 S23: -0.6442 REMARK 3 S31: 0.0089 S32: 0.2205 S33: -0.1898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB052082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97942 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400 0.1M MES, 0.1M MGCL2, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.17050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE CHAINS A REMARK 300 AND B, C AND D FORM DIMERS RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 24.21623 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -33.17050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.55527 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 5.26546 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -33.17050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 135.11055 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ASP B 108 REMARK 465 SER D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -84.65 -30.96 REMARK 500 GLU A 62 62.06 -114.97 REMARK 500 MSE B 1 -91.76 -137.93 REMARK 500 GLU B 62 58.14 -108.94 REMARK 500 SER B 70 52.43 31.78 REMARK 500 GLU C 62 57.09 -111.55 REMARK 500 MSE D 1 -81.58 -83.52 REMARK 500 GLU D 62 54.13 -113.02 REMARK 500 SER D 70 53.90 39.35 REMARK 500 LYS D 81 136.18 -174.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC92103 RELATED DB: TARGETDB DBREF 3GNJ A 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ B 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ C 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ D 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 SEQADV 3GNJ SER A -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN A -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA A 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER B -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN B -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA B 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER C -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN C -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA C 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER D -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN D -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA D 0 UNP B8G0E7 EXPRESSION TAG SEQRES 1 A 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 A 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 A 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 A 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 A 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 A 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 A 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 A 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 A 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 B 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 B 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 B 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 B 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 B 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 B 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 B 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 B 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 B 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 C 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 C 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 C 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 C 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 C 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 C 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 C 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 C 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 C 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 D 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 D 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 D 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 D 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 D 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 D 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 D 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 D 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 D 111 ILE ALA ASP VAL LEU GLU ASP MODRES 3GNJ MSE A 1 MET SELENOMETHIONINE MODRES 3GNJ MSE A 25 MET SELENOMETHIONINE MODRES 3GNJ MSE A 89 MET SELENOMETHIONINE MODRES 3GNJ MSE A 101 MET SELENOMETHIONINE MODRES 3GNJ MSE B 1 MET SELENOMETHIONINE MODRES 3GNJ MSE B 25 MET SELENOMETHIONINE MODRES 3GNJ MSE B 89 MET SELENOMETHIONINE MODRES 3GNJ MSE B 101 MET SELENOMETHIONINE MODRES 3GNJ MSE C 1 MET SELENOMETHIONINE MODRES 3GNJ MSE C 25 MET SELENOMETHIONINE MODRES 3GNJ MSE C 89 MET SELENOMETHIONINE MODRES 3GNJ MSE C 101 MET SELENOMETHIONINE MODRES 3GNJ MSE D 1 MET SELENOMETHIONINE MODRES 3GNJ MSE D 25 MET SELENOMETHIONINE MODRES 3GNJ MSE D 89 MET SELENOMETHIONINE MODRES 3GNJ MSE D 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 89 8 HET MSE A 101 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 89 8 HET MSE B 101 8 HET MSE C 1 8 HET MSE C 25 8 HET MSE C 89 8 HET MSE C 101 8 HET MSE D 1 8 HET MSE D 25 8 HET MSE D 89 8 HET MSE D 101 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *90(H2 O) HELIX 1 1 ASP A 7 TYR A 16 1 10 HELIX 2 2 CYS A 31 TYR A 48 1 18 HELIX 3 3 GLU A 62 PHE A 69 1 8 HELIX 4 4 GLU A 94 ASP A 108 1 15 HELIX 5 5 ASP B 7 TYR B 16 1 10 HELIX 6 6 CYS B 31 LEU B 46 1 16 HELIX 7 7 GLU B 62 PHE B 69 1 8 HELIX 8 8 GLU B 94 GLU B 107 1 14 HELIX 9 9 ASP C 7 TYR C 16 1 10 HELIX 10 10 CYS C 31 GLU C 49 1 19 HELIX 11 11 GLU C 62 PHE C 69 1 8 HELIX 12 12 GLU C 94 ASP C 108 1 15 HELIX 13 13 ASP D 7 ASP D 17 1 11 HELIX 14 14 CYS D 31 LEU D 46 1 16 HELIX 15 15 GLU D 62 PHE D 69 1 8 HELIX 16 16 GLU D 94 ASP D 108 1 15 SHEET 1 A 5 GLU A 4 LYS A 5 0 SHEET 2 A 5 GLY A 53 ASP A 58 1 O TYR A 56 N GLU A 4 SHEET 3 A 5 CYS A 22 SER A 27 1 N MSE A 25 O TYR A 55 SHEET 4 A 5 GLN A 76 LYS A 81 -1 O GLN A 76 N PHE A 26 SHEET 5 A 5 GLU A 84 ALA A 90 -1 O MSE A 89 N ILE A 77 SHEET 1 B 5 GLU B 4 LYS B 5 0 SHEET 2 B 5 PHE B 52 ASP B 58 1 O TYR B 56 N GLU B 4 SHEET 3 B 5 ALA B 21 SER B 27 1 N SER B 27 O VAL B 57 SHEET 4 B 5 GLN B 76 LYS B 81 -1 O GLN B 76 N PHE B 26 SHEET 5 B 5 GLU B 84 ALA B 90 -1 O GLU B 84 N LYS B 81 SHEET 1 C 5 GLU C 4 LYS C 5 0 SHEET 2 C 5 GLY C 53 ASP C 58 1 O TYR C 56 N GLU C 4 SHEET 3 C 5 CYS C 22 SER C 27 1 N MSE C 25 O VAL C 57 SHEET 4 C 5 GLN C 76 LYS C 81 -1 O GLN C 76 N PHE C 26 SHEET 5 C 5 GLU C 84 ALA C 90 -1 O MSE C 89 N ILE C 77 SHEET 1 D 5 GLU D 4 LYS D 5 0 SHEET 2 D 5 GLY D 53 ASP D 58 1 O TYR D 56 N GLU D 4 SHEET 3 D 5 CYS D 22 SER D 27 1 N SER D 27 O VAL D 57 SHEET 4 D 5 GLN D 76 LYS D 81 -1 O GLN D 76 N PHE D 26 SHEET 5 D 5 GLU D 84 ALA D 90 -1 O MSE D 89 N ILE D 77 SSBOND 1 CYS A 31 CYS A 34 1555 1555 2.97 SSBOND 2 CYS B 31 CYS B 34 1555 1555 2.90 SSBOND 3 CYS C 31 CYS C 34 1555 1555 2.93 SSBOND 4 CYS D 31 CYS D 34 1555 1555 2.81 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 24 N MSE A 25 1555 1555 1.32 LINK C MSE A 25 N PHE A 26 1555 1555 1.33 LINK C LYS A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ALA A 90 1555 1555 1.32 LINK C GLN A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ILE A 102 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.32 LINK C VAL B 24 N MSE B 25 1555 1555 1.34 LINK C MSE B 25 N PHE B 26 1555 1555 1.32 LINK C LYS B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N ALA B 90 1555 1555 1.33 LINK C GLN B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N ILE B 102 1555 1555 1.34 LINK C ALA C 0 N MSE C 1 1555 1555 1.32 LINK C MSE C 1 N SER C 2 1555 1555 1.34 LINK C VAL C 24 N MSE C 25 1555 1555 1.32 LINK C MSE C 25 N PHE C 26 1555 1555 1.34 LINK C LYS C 88 N MSE C 89 1555 1555 1.34 LINK C MSE C 89 N ALA C 90 1555 1555 1.32 LINK C GLN C 100 N MSE C 101 1555 1555 1.34 LINK C MSE C 101 N ILE C 102 1555 1555 1.32 LINK C ALA D 0 N MSE D 1 1555 1555 1.34 LINK C MSE D 1 N SER D 2 1555 1555 1.33 LINK C VAL D 24 N MSE D 25 1555 1555 1.32 LINK C MSE D 25 N PHE D 26 1555 1555 1.34 LINK C LYS D 88 N MSE D 89 1555 1555 1.33 LINK C MSE D 89 N ALA D 90 1555 1555 1.32 LINK C GLN D 100 N MSE D 101 1555 1555 1.33 LINK C MSE D 101 N ILE D 102 1555 1555 1.34 CISPEP 1 VAL A 74 PRO A 75 0 -9.13 CISPEP 2 VAL B 74 PRO B 75 0 -3.12 CISPEP 3 VAL C 74 PRO C 75 0 -9.27 CISPEP 4 VAL D 74 PRO D 75 0 -1.59 CRYST1 43.167 66.341 70.163 90.00 105.67 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023166 0.000000 0.006499 0.00000 SCALE2 0.000000 0.015074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014803 0.00000