HEADER IMMUNE SYSTEM 17-MAR-09 3GNM TITLE THE CRYSTAL STRUCTURE OF THE JAA-F11 MONOCLONAL ANTIBODY FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAA-F11 FAB ANTIBODY FRAGMENT, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: JAA-F11 FAB ANTIBODY FRAGMENT, HEAVY CHAIN; COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 CELL: HYBRIDOMA KEYWDS ANTIBODY, IMMUNOGLOBULIN, JAA-F11, THOMPSON-FRIEDENREICH ANTIGEN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,K.RITTENHOUSE-OLSON,S.JADEY REVDAT 4 06-SEP-23 3GNM 1 REMARK REVDAT 3 13-FEB-13 3GNM 1 JRNL REVDAT 2 13-JUL-11 3GNM 1 VERSN REVDAT 1 23-MAR-10 3GNM 0 JRNL AUTH M.B.TESSIER,O.C.GRANT,J.HEIMBURG-MOLINARO,D.SMITH,S.JADEY, JRNL AUTH 2 A.M.GULICK,J.GLUSHKA,S.L.DEUTSCHER,K.RITTENHOUSE-OLSON, JRNL AUTH 3 R.J.WOODS JRNL TITL COMPUTATIONAL SCREENING OF THE HUMAN TF-GLYCOME PROVIDES A JRNL TITL 2 STRUCTURAL DEFINITION FOR THE SPECIFICITY OF ANTI-TUMOR JRNL TITL 3 ANTIBODY JAA-F11. JRNL REF PLOS ONE V. 8 54874 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23365681 JRNL DOI 10.1371/JOURNAL.PONE.0054874 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3451 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4700 ; 1.944 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.588 ;24.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;16.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2597 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2171 ; 1.082 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3522 ; 1.860 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1280 ; 3.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1176 ; 4.644 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1350 -11.7910 -29.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.1146 REMARK 3 T33: 0.0141 T12: 0.0298 REMARK 3 T13: -0.0017 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.8050 L22: 2.4178 REMARK 3 L33: 2.8472 L12: 0.6937 REMARK 3 L13: -0.6191 L23: -1.3249 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0313 S13: 0.0876 REMARK 3 S21: 0.0154 S22: -0.0168 S23: -0.0330 REMARK 3 S31: -0.2980 S32: -0.1565 S33: -0.0290 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 121 H 218 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8350 -25.3320 -1.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0807 REMARK 3 T33: 0.0544 T12: -0.0073 REMARK 3 T13: 0.0047 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.7168 L22: 1.0338 REMARK 3 L33: 1.2204 L12: -0.9644 REMARK 3 L13: 0.6202 L23: -0.2089 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.0562 S13: 0.0282 REMARK 3 S21: 0.0399 S22: 0.0155 S23: -0.1406 REMARK 3 S31: 0.0105 S32: 0.0772 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 111 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9300 -22.8220 -34.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.1358 REMARK 3 T33: 0.0247 T12: -0.0348 REMARK 3 T13: -0.0016 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.0706 L22: 1.6414 REMARK 3 L33: 3.2549 L12: -1.3583 REMARK 3 L13: 1.6101 L23: -1.2611 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.1864 S13: 0.0207 REMARK 3 S21: -0.0512 S22: -0.1677 S23: -0.0610 REMARK 3 S31: -0.1433 S32: 0.2999 S33: 0.0939 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 115 L 217 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8420 -41.1150 -2.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0578 REMARK 3 T33: 0.0919 T12: 0.0092 REMARK 3 T13: 0.0203 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.6069 L22: 0.9780 REMARK 3 L33: 0.7565 L12: -1.0226 REMARK 3 L13: -0.7764 L23: 0.5355 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: -0.0693 S13: -0.3275 REMARK 3 S21: 0.1273 S22: -0.0140 S23: 0.1823 REMARK 3 S31: 0.1719 S32: 0.0838 S33: 0.0995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSING 5.05 REMARK 200 ASYMMETRIC CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1CLZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 5000, 50 MM LIBR, 50 MM REMARK 280 NACITRATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.21250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.73750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.21250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.73750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 218 REMARK 465 CYS L 219 REMARK 465 ILE H 219 REMARK 465 PRO H 220 REMARK 465 LYS H 221 REMARK 465 THR H 222 REMARK 465 SER H 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 65 CG OD1 OD2 REMARK 470 SER L 158 OG REMARK 470 GLN L 161 CG CD OE1 NE2 REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 SER H 134 OG REMARK 470 SER H 137 OG REMARK 470 ARG H 214 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU L 39 OH TYR L 41 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER L 10 CB SER L 10 OG -0.094 REMARK 500 GLY H 8 N GLY H 8 CA 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER L 10 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 LEU L 11 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 LEU L 38 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG H 40 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG H 40 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU H 211 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -54.87 79.44 REMARK 500 ASN L 143 54.97 71.74 REMARK 500 ARG L 216 98.95 -65.39 REMARK 500 THR H 77 51.54 36.64 REMARK 500 PHE H 100 -151.37 -96.15 REMARK 500 ASN H 104 -95.36 -94.84 REMARK 500 TYR H 161 14.10 59.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG L 216 ASN L 217 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO L 900 DBREF 3GNM L 1 219 PDB 3GNM 3GNM 1 219 DBREF 3GNM H 1 223 PDB 3GNM 3GNM 1 223 SEQRES 1 L 219 GLU VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 ASN LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN THR ILE VAL TYR SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA ASP ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO PHE THR PHE GLY SEQRES 9 L 219 SER GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN GLY TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 223 ALA VAL GLN PHE LEU GLU SER GLY ALA GLU LEU ALA LYS SEQRES 2 H 223 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 223 TYR THR PHE THR THR TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 223 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY PHE ILE SER SEQRES 5 H 223 PRO ASN THR ASP TYR THR GLU TYR ASN GLN LYS PHE ARG SEQRES 6 H 223 ASP LYS ALA THR LEU THR ALA ASP LYS SER SER THR THR SEQRES 7 H 223 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ARG SER PHE ILE GLY TYR ASN SEQRES 9 H 223 PHE ASP PHE TRP GLY GLN GLY THR THR LEU THR VAL SER SEQRES 10 H 223 SER ALA THR THR THR ALA PRO SER VAL TYR PRO LEU VAL SEQRES 11 H 223 PRO GLY CYS SER ASP THR SER GLY SER SER VAL THR LEU SEQRES 12 H 223 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 223 VAL LYS TRP ASN TYR GLY ALA LEU SER SER GLY VAL ARG SEQRES 14 H 223 THR VAL SER SER VAL LEU GLN SER GLY PHE TYR SER LEU SEQRES 15 H 223 SER SER LEU VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 223 GLN THR VAL ILE CYS ASN VAL ALA HIS PRO ALA SER LYS SEQRES 17 H 223 THR GLU LEU ILE LYS ARG ILE GLU PRO ARG ILE PRO LYS SEQRES 18 H 223 THR SER HET 1PE L 700 16 HET EDO L 900 4 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 1PE C10 H22 O6 FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *176(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 5 7 HELIX 3 3 LYS L 188 HIS L 194 1 7 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 GLN H 62 ARG H 65 5 4 HELIX 6 6 THR H 87 SER H 91 5 5 HELIX 7 7 TYR H 161 ALA H 163 5 3 HELIX 8 8 SER H 191 TRP H 193 5 3 HELIX 9 9 PRO H 205 LYS H 208 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 ASN L 14 0 SHEET 2 B 6 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 B 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 ASN L 14 0 SHEET 2 C 4 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 D 4 TYR L 178 THR L 187 -1 O SER L 182 N CYS L 139 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 E 4 SER L 158 GLU L 159 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 HIS L 203 -1 O THR L 198 N LYS L 154 SHEET 4 E 4 SER L 206 ASN L 215 -1 O ILE L 210 N ALA L 201 SHEET 1 F 4 GLN H 3 GLU H 6 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O LYS H 23 N LEU H 5 SHEET 3 F 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 F 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 G 6 ALA H 9 ALA H 12 0 SHEET 2 G 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 G 6 ALA H 92 SER H 99 -1 N ALA H 92 O LEU H 114 SHEET 4 G 6 TRP H 33 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 G 6 THR H 58 TYR H 60 -1 O GLU H 59 N PHE H 50 SHEET 1 H 4 ALA H 9 ALA H 12 0 SHEET 2 H 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 H 4 ALA H 92 SER H 99 -1 N ALA H 92 O LEU H 114 SHEET 4 H 4 PHE H 107 TRP H 108 -1 O PHE H 107 N ARG H 98 SHEET 1 I 4 SER H 125 LEU H 129 0 SHEET 2 I 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 I 4 PHE H 179 PRO H 189 -1 O VAL H 186 N LEU H 143 SHEET 4 I 4 ARG H 169 THR H 170 -1 N ARG H 169 O LEU H 185 SHEET 1 J 4 SER H 125 LEU H 129 0 SHEET 2 J 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 J 4 PHE H 179 PRO H 189 -1 O VAL H 186 N LEU H 143 SHEET 4 J 4 VAL H 174 GLN H 176 -1 N GLN H 176 O PHE H 179 SHEET 1 K 3 THR H 156 TRP H 159 0 SHEET 2 K 3 ILE H 199 HIS H 204 -1 O ASN H 201 N LYS H 158 SHEET 3 K 3 THR H 209 ARG H 214 -1 O LEU H 211 N VAL H 202 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.19 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 4 CYS H 145 CYS H 200 1555 1555 2.07 CISPEP 1 THR L 7 PRO L 8 0 -6.79 CISPEP 2 VAL L 99 PRO L 100 0 -0.16 CISPEP 3 TYR L 145 PRO L 146 0 3.11 CISPEP 4 PHE H 151 PRO H 152 0 -11.45 CISPEP 5 GLU H 153 PRO H 154 0 -1.44 CISPEP 6 TRP H 193 PRO H 194 0 9.22 SITE 1 AC1 4 LEU L 42 LYS L 44 PRO L 64 HOH L 314 CRYST1 94.210 94.210 94.950 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010532 0.00000