HEADER GENE REGULATION 18-MAR-09 3GO5 TITLE CRYSTAL STRUCTURE OF A MULTIDOMAIN PROTEIN WITH NUCLEIC ACID BINDING TITLE 2 DOMAINS (SP_0946) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 1.40 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIDOMAIN PROTEIN WITH S1 RNA-BINDING DOMAINS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334; SOURCE 6 GENE: NP_345429.1, SP_0946; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS S1 RNA-BINDING DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, GENE KEYWDS 3 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3GO5 1 REMARK SEQADV REVDAT 7 24-JUL-19 3GO5 1 REMARK LINK REVDAT 6 01-NOV-17 3GO5 1 REMARK REVDAT 5 13-JUL-11 3GO5 1 VERSN REVDAT 4 23-MAR-11 3GO5 1 HEADER TITLE KEYWDS REVDAT 3 08-SEP-10 3GO5 1 JRNL REVDAT 2 05-MAY-10 3GO5 1 JRNL REVDAT 1 07-APR-09 3GO5 0 JRNL AUTH Y.MATSUMOTO,Q.XU,S.MIYAZAKI,C.KAITO,C.L.FARR,H.L.AXELROD, JRNL AUTH 2 H.J.CHIU,H.E.KLOCK,M.W.KNUTH,M.D.MILLER,M.A.ELSLIGER, JRNL AUTH 3 A.M.DEACON,A.GODZIK,S.A.LESLEY,K.SEKIMIZU,I.A.WILSON JRNL TITL STRUCTURE OF A VIRULENCE REGULATORY FACTOR CVFB REVEALS A JRNL TITL 2 NOVEL WINGED HELIX RNA BINDING MODULE. JRNL REF STRUCTURE V. 18 537 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20399190 JRNL DOI 10.1016/J.STR.2010.02.007 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2658 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1938 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3605 ; 1.420 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4743 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 5.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;32.460 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;11.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1540 ; 1.243 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 626 ; 0.339 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2520 ; 2.130 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1118 ; 3.707 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1053 ; 5.724 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8474 27.7831 -6.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0074 REMARK 3 T33: 0.0088 T12: 0.0092 REMARK 3 T13: -0.0020 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5116 L22: 1.0667 REMARK 3 L33: 1.5437 L12: 0.4002 REMARK 3 L13: 0.2819 L23: 0.4215 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.0066 S13: 0.0529 REMARK 3 S21: -0.0549 S22: -0.0119 S23: 0.0024 REMARK 3 S31: -0.0995 S32: -0.0244 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2596 31.8993 14.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.0069 T22: 0.0017 REMARK 3 T33: 0.0046 T12: 0.0016 REMARK 3 T13: 0.0046 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4685 L22: 0.4367 REMARK 3 L33: 0.4310 L12: -0.0169 REMARK 3 L13: 0.2130 L23: -0.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.0066 S13: 0.0137 REMARK 3 S21: -0.0304 S22: 0.0055 S23: -0.0095 REMARK 3 S31: -0.0138 S32: -0.0196 S33: -0.0294 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 53.1673 15.3964 29.8029 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: 0.0088 REMARK 3 T33: 0.0048 T12: 0.0057 REMARK 3 T13: 0.0049 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7913 L22: 0.6941 REMARK 3 L33: 0.3741 L12: -0.3109 REMARK 3 L13: -0.0484 L23: -0.2372 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.0549 S13: -0.0543 REMARK 3 S21: 0.0420 S22: 0.0701 S23: 0.0124 REMARK 3 S31: 0.0162 S32: -0.0316 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 72.6686 -8.5646 37.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0101 REMARK 3 T33: 0.0231 T12: 0.0130 REMARK 3 T13: -0.0227 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.3685 L22: 0.5307 REMARK 3 L33: 0.6045 L12: 0.2858 REMARK 3 L13: 0.0174 L23: 0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.0123 S13: 0.0616 REMARK 3 S21: 0.0147 S22: 0.0404 S23: 0.0195 REMARK 3 S31: 0.0194 S32: 0.0484 S33: 0.0360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. ETHYLENE GLYCOL (EDO) AND CHLORIDE (CL) FROM THE REMARK 3 CRYOPROTECTANT/CRYSTALLIZATION CONDITIONS ARE MODELED INTO THE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3GO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97839 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.136 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.3640M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.40000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.40000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 52 O HOH A 813 2.02 REMARK 500 O ILE A 284 O HOH A 843 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 -166.91 -77.65 REMARK 500 GLN A 55 -8.01 91.32 REMARK 500 THR A 65 -72.30 -95.92 REMARK 500 LEU A 83 -54.54 -130.60 REMARK 500 TYR A 186 -100.40 -104.80 REMARK 500 TYR A 186 -105.03 -104.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389882 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GO5 A 1 284 UNP Q97R81 Q97R81_STRPN 1 284 SEQADV 3GO5 GLY A 0 UNP Q97R81 EXPRESSION TAG SEQRES 1 A 285 GLY MSE ASN THR ASN LEU ALA SER PHE ILE VAL GLY LEU SEQRES 2 A 285 ILE ILE ASP GLU ASN ASP ARG PHE TYR PHE VAL GLN LYS SEQRES 3 A 285 ASP GLY GLN THR TYR ALA LEU ALA LYS GLU GLU GLY GLN SEQRES 4 A 285 HIS THR VAL GLY ASP THR VAL LYS GLY PHE ALA TYR THR SEQRES 5 A 285 ASP MSE LYS GLN LYS LEU ARG LEU THR THR LEU GLU VAL SEQRES 6 A 285 THR ALA THR GLN ASP GLN PHE GLY TRP GLY ARG VAL THR SEQRES 7 A 285 GLU VAL ARG LYS ASP LEU GLY VAL PHE VAL ASP THR GLY SEQRES 8 A 285 LEU PRO ASP LYS GLU ILE VAL VAL SER LEU ASP ILE LEU SEQRES 9 A 285 PRO GLU LEU LYS GLU LEU TRP PRO LYS LYS GLY ASP GLN SEQRES 10 A 285 LEU TYR ILE ARG LEU GLU VAL ASP LYS LYS ASP ARG ILE SEQRES 11 A 285 TRP GLY LEU LEU ALA TYR GLN GLU ASP PHE GLN ARG LEU SEQRES 12 A 285 ALA ARG PRO ALA TYR ASN ASN MSE GLN ASN GLN ASN TRP SEQRES 13 A 285 PRO ALA ILE VAL TYR ARG LEU LYS LEU SER GLY THR PHE SEQRES 14 A 285 VAL TYR LEU PRO GLU ASN ASN MSE LEU GLY PHE ILE HIS SEQRES 15 A 285 PRO SER GLU ARG TYR ALA GLU PRO ARG LEU GLY GLN VAL SEQRES 16 A 285 LEU ASP ALA ARG VAL ILE GLY PHE ARG GLU VAL ASP ARG SEQRES 17 A 285 THR LEU ASN LEU SER LEU LYS PRO ARG SER PHE GLU MSE SEQRES 18 A 285 LEU GLU ASN ASP ALA GLN MSE ILE LEU THR TYR LEU GLU SEQRES 19 A 285 SER ASN GLY GLY PHE MSE THR LEU ASN ASP LYS SER SER SEQRES 20 A 285 PRO ASP ASP ILE LYS ALA THR PHE GLY ILE SER LYS GLY SEQRES 21 A 285 GLN PHE LYS LYS ALA LEU GLY GLY LEU MSE LYS ALA GLY SEQRES 22 A 285 LYS ILE LYS GLN ASP GLN PHE GLY THR GLU LEU ILE MODRES 3GO5 MSE A 1 MET SELENOMETHIONINE MODRES 3GO5 MSE A 53 MET SELENOMETHIONINE MODRES 3GO5 MSE A 150 MET SELENOMETHIONINE MODRES 3GO5 MSE A 176 MET SELENOMETHIONINE MODRES 3GO5 MSE A 220 MET SELENOMETHIONINE MODRES 3GO5 MSE A 227 MET SELENOMETHIONINE MODRES 3GO5 MSE A 239 MET SELENOMETHIONINE MODRES 3GO5 MSE A 269 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 53 16 HET MSE A 150 8 HET MSE A 176 8 HET MSE A 220 8 HET MSE A 227 8 HET MSE A 239 8 HET MSE A 269 8 HET CL A 285 1 HET EDO A 286 4 HET EDO A 287 4 HET EDO A 288 4 HET EDO A 289 4 HET EDO A 290 4 HET EDO A 291 4 HET EDO A 292 4 HET EDO A 293 7 HET EDO A 294 7 HET EDO A 295 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 HOH *646(H2 O) HELIX 1 1 GLU A 35 GLY A 37 5 3 HELIX 2 2 ASP A 101 LEU A 103 5 3 HELIX 3 3 LEU A 106 TRP A 110 5 5 HELIX 4 4 TYR A 135 ALA A 143 1 9 HELIX 5 5 PRO A 182 ARG A 185 5 4 HELIX 6 6 GLU A 222 ASN A 235 1 14 HELIX 7 7 SER A 246 GLY A 255 1 10 HELIX 8 8 SER A 257 ALA A 271 1 15 SHEET 1 A 6 SER A 7 GLU A 16 0 SHEET 2 A 6 PHE A 20 LYS A 25 -1 O GLN A 24 N LEU A 12 SHEET 3 A 6 GLN A 28 ALA A 33 -1 O TYR A 30 N VAL A 23 SHEET 4 A 6 LEU A 57 THR A 60 1 O LEU A 57 N ALA A 31 SHEET 5 A 6 THR A 44 THR A 51 -1 N TYR A 50 O ARG A 58 SHEET 6 A 6 SER A 7 GLU A 16 -1 N SER A 7 O ALA A 49 SHEET 1 B 5 ILE A 96 SER A 99 0 SHEET 2 B 5 GLY A 84 ASP A 88 -1 N VAL A 85 O VAL A 98 SHEET 3 B 5 GLY A 72 ARG A 80 -1 N ARG A 80 O GLY A 84 SHEET 4 B 5 GLN A 116 VAL A 123 -1 O ILE A 119 N GLY A 72 SHEET 5 B 5 ILE A 129 LEU A 133 -1 O LEU A 132 N ARG A 120 SHEET 1 C 6 ASN A 154 LYS A 163 0 SHEET 2 C 6 GLY A 166 LEU A 171 -1 O TYR A 170 N ILE A 158 SHEET 3 C 6 MSE A 176 ILE A 180 -1 O MSE A 176 N LEU A 171 SHEET 4 C 6 THR A 208 SER A 212 1 O LEU A 211 N PHE A 179 SHEET 5 C 6 VAL A 194 ARG A 203 -1 N ARG A 203 O THR A 208 SHEET 6 C 6 ASN A 154 LYS A 163 -1 N ALA A 157 O LEU A 195 SHEET 1 D 3 PHE A 238 MSE A 239 0 SHEET 2 D 3 GLY A 280 LEU A 283 -1 O THR A 281 N MSE A 239 SHEET 3 D 3 ILE A 274 ASP A 277 -1 N LYS A 275 O GLU A 282 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C AASP A 52 N AMSE A 53 1555 1555 1.33 LINK C BASP A 52 N BMSE A 53 1555 1555 1.32 LINK C AMSE A 53 N ALYS A 54 1555 1555 1.33 LINK C BMSE A 53 N BLYS A 54 1555 1555 1.33 LINK C ASN A 149 N MSE A 150 1555 1555 1.32 LINK C MSE A 150 N GLN A 151 1555 1555 1.33 LINK C ASN A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N LEU A 177 1555 1555 1.33 LINK C GLU A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N LEU A 221 1555 1555 1.33 LINK C GLN A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ILE A 228 1555 1555 1.32 LINK C PHE A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N THR A 240 1555 1555 1.33 LINK C LEU A 268 N MSE A 269 1555 1555 1.32 LINK C MSE A 269 N LYS A 270 1555 1555 1.33 SITE 1 AC1 4 GLN A 24 GLU A 204 VAL A 205 HOH A 918 SITE 1 AC2 7 LEU A 162 LYS A 163 LEU A 164 GLU A 188 SITE 2 AC2 7 LYS A 251 HOH A 698 HOH A 705 SITE 1 AC3 7 ALA A 134 TYR A 135 TYR A 160 ARG A 161 SITE 2 AC3 7 HOH A 597 HOH A 704 HOH A 719 SITE 1 AC4 6 TRP A 73 GLN A 116 GLN A 278 PHE A 279 SITE 2 AC4 6 HOH A 442 HOH A 599 SITE 1 AC5 4 TYR A 186 ALA A 187 GLN A 193 HOH A 926 SITE 1 AC6 4 ASP A 243 LYS A 244 ASP A 277 HOH A 564 SITE 1 AC7 2 PHE A 8 LYS A 46 SITE 1 AC8 5 PRO A 172 GLU A 173 ASP A 277 PHE A 279 SITE 2 AC8 5 HOH A 518 SITE 1 AC9 7 LEU A 100 ASP A 101 THR A 253 HOH A 385 SITE 2 AC9 7 HOH A 473 HOH A 527 HOH A 917 SITE 1 BC1 6 MSE A 1 ASN A 2 THR A 3 ASN A 4 SITE 2 BC1 6 ASP A 26 HOH A 872 SITE 1 BC2 1 HOH A 469 CRYST1 62.560 62.560 160.200 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015985 0.009229 0.000000 0.00000 SCALE2 0.000000 0.018457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006242 0.00000