data_3GOG # _entry.id 3GOG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GOG pdb_00003gog 10.2210/pdb3gog/pdb NDB UR0191 ? ? RCSB RCSB052115 ? ? WWPDB D_1000052115 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GOG _pdbx_database_status.recvd_initial_deposition_date 2009-03-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U8D 'Guanine riboswitch bound to hypoxanthine.' unspecified PDB 2EET 'Guanine riboswitch A21G,U75C mutant bound to hypoxanthine' unspecified PDB 3GOT 'Guanine riboswitch C74U mutant bound to 2-fluoroadenine' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Batey, R.T.' 2 # _citation.id primary _citation.title 'Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 857 _citation.page_last 868 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19523903 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.04.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Edwards, A.L.' 3 ? primary 'Batey, R.T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21521.801 1 ? A21G,U75C ? ? 2 non-polymer syn 6-chloroguanine 169.572 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 8 ? ? ? ? 5 water nat water 18.015 253 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 6-chloroguanine 6GU 3 'ACETATE ION' ACT 4 'COBALT HEXAMMINE(III)' NCO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 G n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 C n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence was engineered based on the guanine riboswitch in the 5'UTR of the xpt-pbuX gene in Bacillus subtilis. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6GU non-polymer . 6-chloroguanine 6-chloro-9H-purin-2-amine 'C5 H4 Cl N5' 169.572 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 ? ? ? A . n A 1 2 G 2 16 16 G G A . n A 1 3 A 3 17 17 A A A . n A 1 4 C 4 18 18 C C A . n A 1 5 A 5 19 19 A A A . n A 1 6 U 6 20 20 U U A . n A 1 7 G 7 21 21 G G A . n A 1 8 U 8 22 22 U U A . n A 1 9 A 9 23 23 A A A . n A 1 10 A 10 24 24 A A A . n A 1 11 U 11 25 25 U U A . n A 1 12 C 12 26 26 C C A . n A 1 13 G 13 27 27 G G A . n A 1 14 C 14 28 28 C C A . n A 1 15 G 15 29 29 G G A . n A 1 16 U 16 30 30 U U A . n A 1 17 G 17 31 31 G G A . n A 1 18 G 18 32 32 G G A . n A 1 19 A 19 33 33 A A A . n A 1 20 U 20 34 34 U U A . n A 1 21 A 21 35 35 A A A . n A 1 22 U 22 36 36 U U A . n A 1 23 G 23 37 37 G G A . n A 1 24 G 24 38 38 G G A . n A 1 25 C 25 39 39 C C A . n A 1 26 A 26 40 40 A A A . n A 1 27 C 27 41 41 C C A . n A 1 28 G 28 42 42 G G A . n A 1 29 C 29 43 43 C C A . n A 1 30 A 30 44 44 A A A . n A 1 31 A 31 45 45 A A A . n A 1 32 G 32 46 46 G G A . n A 1 33 U 33 47 47 U U A . n A 1 34 U 34 48 48 U U A . n A 1 35 U 35 49 49 U U A . n A 1 36 C 36 50 50 C C A . n A 1 37 U 37 51 51 U U A . n A 1 38 A 38 52 52 A A A . n A 1 39 C 39 53 53 C C A . n A 1 40 C 40 54 54 C C A . n A 1 41 G 41 55 55 G G A . n A 1 42 G 42 56 56 G G A . n A 1 43 G 43 57 57 G G A . n A 1 44 C 44 58 58 C C A . n A 1 45 A 45 59 59 A A A . n A 1 46 C 46 60 60 C C A . n A 1 47 C 47 61 61 C C A . n A 1 48 G 48 62 62 G G A . n A 1 49 U 49 63 63 U U A . n A 1 50 A 50 64 64 A A A . n A 1 51 A 51 65 65 A A A . n A 1 52 A 52 66 66 A A A . n A 1 53 U 53 67 67 U U A . n A 1 54 G 54 68 68 G G A . n A 1 55 U 55 69 69 U U A . n A 1 56 C 56 70 70 C C A . n A 1 57 C 57 71 71 C C A . n A 1 58 G 58 72 72 G G A . n A 1 59 A 59 73 73 A A A . n A 1 60 C 60 74 74 C C A . n A 1 61 C 61 75 75 C C A . n A 1 62 A 62 76 76 A A A . n A 1 63 U 63 77 77 U U A . n A 1 64 G 64 78 78 G G A . n A 1 65 U 65 79 79 U U A . n A 1 66 C 66 80 80 C C A . n A 1 67 C 67 81 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GU 1 91 91 6GU 6GU A . C 3 ACT 1 96 96 ACT ACT A . D 4 NCO 1 101 101 NCO NCO A . E 4 NCO 1 102 102 NCO NCO A . F 4 NCO 1 103 103 NCO NCO A . G 4 NCO 1 104 104 NCO NCO A . H 4 NCO 1 105 105 NCO NCO A . I 4 NCO 1 107 107 NCO NCO A . J 4 NCO 1 108 108 NCO NCO A . K 4 NCO 1 112 112 NCO NCO A . L 5 HOH 1 301 301 HOH HOH A . L 5 HOH 2 302 302 HOH HOH A . L 5 HOH 3 303 303 HOH HOH A . L 5 HOH 4 304 304 HOH HOH A . L 5 HOH 5 305 305 HOH HOH A . L 5 HOH 6 306 306 HOH HOH A . L 5 HOH 7 307 307 HOH HOH A . L 5 HOH 8 308 308 HOH HOH A . L 5 HOH 9 309 309 HOH HOH A . L 5 HOH 10 310 310 HOH HOH A . L 5 HOH 11 311 311 HOH HOH A . L 5 HOH 12 312 312 HOH HOH A . L 5 HOH 13 313 313 HOH HOH A . L 5 HOH 14 314 314 HOH HOH A . L 5 HOH 15 315 315 HOH HOH A . L 5 HOH 16 316 316 HOH HOH A . L 5 HOH 17 317 317 HOH HOH A . L 5 HOH 18 318 318 HOH HOH A . L 5 HOH 19 319 319 HOH HOH A . L 5 HOH 20 320 320 HOH HOH A . L 5 HOH 21 321 321 HOH HOH A . L 5 HOH 22 322 322 HOH HOH A . L 5 HOH 23 323 323 HOH HOH A . L 5 HOH 24 324 324 HOH HOH A . L 5 HOH 25 325 325 HOH HOH A . L 5 HOH 26 326 326 HOH HOH A . L 5 HOH 27 327 327 HOH HOH A . L 5 HOH 28 328 328 HOH HOH A . L 5 HOH 29 329 329 HOH HOH A . L 5 HOH 30 330 330 HOH HOH A . L 5 HOH 31 331 331 HOH HOH A . L 5 HOH 32 332 332 HOH HOH A . L 5 HOH 33 333 333 HOH HOH A . L 5 HOH 34 334 334 HOH HOH A . L 5 HOH 35 335 335 HOH HOH A . L 5 HOH 36 336 336 HOH HOH A . L 5 HOH 37 337 337 HOH HOH A . L 5 HOH 38 338 338 HOH HOH A . L 5 HOH 39 339 339 HOH HOH A . L 5 HOH 40 340 340 HOH HOH A . L 5 HOH 41 341 341 HOH HOH A . L 5 HOH 42 342 342 HOH HOH A . L 5 HOH 43 343 343 HOH HOH A . L 5 HOH 44 344 344 HOH HOH A . L 5 HOH 45 345 345 HOH HOH A . L 5 HOH 46 346 346 HOH HOH A . L 5 HOH 47 347 347 HOH HOH A . L 5 HOH 48 348 348 HOH HOH A . L 5 HOH 49 349 349 HOH HOH A . L 5 HOH 50 350 350 HOH HOH A . L 5 HOH 51 351 351 HOH HOH A . L 5 HOH 52 352 352 HOH HOH A . L 5 HOH 53 353 353 HOH HOH A . L 5 HOH 54 354 354 HOH HOH A . L 5 HOH 55 355 355 HOH HOH A . L 5 HOH 56 356 356 HOH HOH A . L 5 HOH 57 357 357 HOH HOH A . L 5 HOH 58 358 358 HOH HOH A . L 5 HOH 59 359 359 HOH HOH A . L 5 HOH 60 360 360 HOH HOH A . L 5 HOH 61 361 361 HOH HOH A . L 5 HOH 62 362 362 HOH HOH A . L 5 HOH 63 363 363 HOH HOH A . L 5 HOH 64 364 364 HOH HOH A . L 5 HOH 65 365 365 HOH HOH A . L 5 HOH 66 366 366 HOH HOH A . L 5 HOH 67 367 367 HOH HOH A . L 5 HOH 68 368 368 HOH HOH A . L 5 HOH 69 369 369 HOH HOH A . L 5 HOH 70 370 370 HOH HOH A . L 5 HOH 71 371 371 HOH HOH A . L 5 HOH 72 372 372 HOH HOH A . L 5 HOH 73 373 373 HOH HOH A . L 5 HOH 74 374 374 HOH HOH A . L 5 HOH 75 375 375 HOH HOH A . L 5 HOH 76 376 376 HOH HOH A . L 5 HOH 77 377 377 HOH HOH A . L 5 HOH 78 378 378 HOH HOH A . L 5 HOH 79 379 379 HOH HOH A . L 5 HOH 80 380 380 HOH HOH A . L 5 HOH 81 381 381 HOH HOH A . L 5 HOH 82 382 382 HOH HOH A . L 5 HOH 83 383 383 HOH HOH A . L 5 HOH 84 384 384 HOH HOH A . L 5 HOH 85 385 385 HOH HOH A . L 5 HOH 86 386 386 HOH HOH A . L 5 HOH 87 387 387 HOH HOH A . L 5 HOH 88 388 388 HOH HOH A . L 5 HOH 89 389 389 HOH HOH A . L 5 HOH 90 390 390 HOH HOH A . L 5 HOH 91 391 391 HOH HOH A . L 5 HOH 92 392 392 HOH HOH A . L 5 HOH 93 393 393 HOH HOH A . L 5 HOH 94 394 394 HOH HOH A . L 5 HOH 95 395 395 HOH HOH A . L 5 HOH 96 396 396 HOH HOH A . L 5 HOH 97 397 397 HOH HOH A . L 5 HOH 98 398 398 HOH HOH A . L 5 HOH 99 399 399 HOH HOH A . L 5 HOH 100 400 400 HOH HOH A . L 5 HOH 101 401 401 HOH HOH A . L 5 HOH 102 402 402 HOH HOH A . L 5 HOH 103 403 403 HOH HOH A . L 5 HOH 104 404 404 HOH HOH A . L 5 HOH 105 405 405 HOH HOH A . L 5 HOH 106 406 406 HOH HOH A . L 5 HOH 107 407 407 HOH HOH A . L 5 HOH 108 408 408 HOH HOH A . L 5 HOH 109 409 409 HOH HOH A . L 5 HOH 110 410 410 HOH HOH A . L 5 HOH 111 411 411 HOH HOH A . L 5 HOH 112 412 412 HOH HOH A . L 5 HOH 113 413 413 HOH HOH A . L 5 HOH 114 414 414 HOH HOH A . L 5 HOH 115 415 415 HOH HOH A . L 5 HOH 116 416 416 HOH HOH A . L 5 HOH 117 417 417 HOH HOH A . L 5 HOH 118 418 418 HOH HOH A . L 5 HOH 119 419 419 HOH HOH A . L 5 HOH 120 420 420 HOH HOH A . L 5 HOH 121 421 421 HOH HOH A . L 5 HOH 122 422 422 HOH HOH A . L 5 HOH 123 423 423 HOH HOH A . L 5 HOH 124 424 424 HOH HOH A . L 5 HOH 125 425 425 HOH HOH A . L 5 HOH 126 426 426 HOH HOH A . L 5 HOH 127 427 427 HOH HOH A . L 5 HOH 128 428 428 HOH HOH A . L 5 HOH 129 429 429 HOH HOH A . L 5 HOH 130 430 430 HOH HOH A . L 5 HOH 131 431 431 HOH HOH A . L 5 HOH 132 432 432 HOH HOH A . L 5 HOH 133 433 433 HOH HOH A . L 5 HOH 134 434 434 HOH HOH A . L 5 HOH 135 435 435 HOH HOH A . L 5 HOH 136 436 436 HOH HOH A . L 5 HOH 137 437 437 HOH HOH A . L 5 HOH 138 438 438 HOH HOH A . L 5 HOH 139 439 439 HOH HOH A . L 5 HOH 140 440 440 HOH HOH A . L 5 HOH 141 441 441 HOH HOH A . L 5 HOH 142 442 442 HOH HOH A . L 5 HOH 143 443 443 HOH HOH A . L 5 HOH 144 444 444 HOH HOH A . L 5 HOH 145 445 445 HOH HOH A . L 5 HOH 146 446 446 HOH HOH A . L 5 HOH 147 447 447 HOH HOH A . L 5 HOH 148 448 448 HOH HOH A . L 5 HOH 149 449 449 HOH HOH A . L 5 HOH 150 450 450 HOH HOH A . L 5 HOH 151 451 451 HOH HOH A . L 5 HOH 152 452 452 HOH HOH A . L 5 HOH 153 453 453 HOH HOH A . L 5 HOH 154 454 454 HOH HOH A . L 5 HOH 155 455 455 HOH HOH A . L 5 HOH 156 456 456 HOH HOH A . L 5 HOH 157 457 457 HOH HOH A . L 5 HOH 158 458 458 HOH HOH A . L 5 HOH 159 459 459 HOH HOH A . L 5 HOH 160 460 460 HOH HOH A . L 5 HOH 161 461 461 HOH HOH A . L 5 HOH 162 462 462 HOH HOH A . L 5 HOH 163 463 463 HOH HOH A . L 5 HOH 164 464 464 HOH HOH A . L 5 HOH 165 465 465 HOH HOH A . L 5 HOH 166 466 466 HOH HOH A . L 5 HOH 167 467 467 HOH HOH A . L 5 HOH 168 468 468 HOH HOH A . L 5 HOH 169 469 469 HOH HOH A . L 5 HOH 170 470 470 HOH HOH A . L 5 HOH 171 471 471 HOH HOH A . L 5 HOH 172 472 472 HOH HOH A . L 5 HOH 173 473 473 HOH HOH A . L 5 HOH 174 474 474 HOH HOH A . L 5 HOH 175 475 475 HOH HOH A . L 5 HOH 176 476 476 HOH HOH A . L 5 HOH 177 477 477 HOH HOH A . L 5 HOH 178 478 478 HOH HOH A . L 5 HOH 179 479 479 HOH HOH A . L 5 HOH 180 480 480 HOH HOH A . L 5 HOH 181 481 481 HOH HOH A . L 5 HOH 182 482 482 HOH HOH A . L 5 HOH 183 483 483 HOH HOH A . L 5 HOH 184 484 484 HOH HOH A . L 5 HOH 185 485 485 HOH HOH A . L 5 HOH 186 486 486 HOH HOH A . L 5 HOH 187 487 487 HOH HOH A . L 5 HOH 188 488 488 HOH HOH A . L 5 HOH 189 489 489 HOH HOH A . L 5 HOH 190 490 490 HOH HOH A . L 5 HOH 191 491 491 HOH HOH A . L 5 HOH 192 492 492 HOH HOH A . L 5 HOH 193 493 493 HOH HOH A . L 5 HOH 194 494 494 HOH HOH A . L 5 HOH 195 495 495 HOH HOH A . L 5 HOH 196 496 496 HOH HOH A . L 5 HOH 197 497 497 HOH HOH A . L 5 HOH 198 498 498 HOH HOH A . L 5 HOH 199 499 499 HOH HOH A . L 5 HOH 200 500 500 HOH HOH A . L 5 HOH 201 501 501 HOH HOH A . L 5 HOH 202 502 502 HOH HOH A . L 5 HOH 203 503 503 HOH HOH A . L 5 HOH 204 504 504 HOH HOH A . L 5 HOH 205 505 505 HOH HOH A . L 5 HOH 206 506 506 HOH HOH A . L 5 HOH 207 507 507 HOH HOH A . L 5 HOH 208 508 508 HOH HOH A . L 5 HOH 209 509 509 HOH HOH A . L 5 HOH 210 510 510 HOH HOH A . L 5 HOH 211 511 511 HOH HOH A . L 5 HOH 212 512 512 HOH HOH A . L 5 HOH 213 513 513 HOH HOH A . L 5 HOH 214 514 514 HOH HOH A . L 5 HOH 215 515 515 HOH HOH A . L 5 HOH 216 516 516 HOH HOH A . L 5 HOH 217 517 517 HOH HOH A . L 5 HOH 218 518 518 HOH HOH A . L 5 HOH 219 519 519 HOH HOH A . L 5 HOH 220 520 520 HOH HOH A . L 5 HOH 221 521 521 HOH HOH A . L 5 HOH 222 522 522 HOH HOH A . L 5 HOH 223 523 523 HOH HOH A . L 5 HOH 224 524 524 HOH HOH A . L 5 HOH 225 525 525 HOH HOH A . L 5 HOH 226 526 526 HOH HOH A . L 5 HOH 227 527 527 HOH HOH A . L 5 HOH 228 528 528 HOH HOH A . L 5 HOH 229 529 529 HOH HOH A . L 5 HOH 230 530 530 HOH HOH A . L 5 HOH 231 531 531 HOH HOH A . L 5 HOH 232 532 532 HOH HOH A . L 5 HOH 233 533 533 HOH HOH A . L 5 HOH 234 534 534 HOH HOH A . L 5 HOH 235 535 535 HOH HOH A . L 5 HOH 236 536 536 HOH HOH A . L 5 HOH 237 537 537 HOH HOH A . L 5 HOH 238 538 538 HOH HOH A . L 5 HOH 239 539 539 HOH HOH A . L 5 HOH 240 540 540 HOH HOH A . L 5 HOH 241 541 541 HOH HOH A . L 5 HOH 242 542 542 HOH HOH A . L 5 HOH 243 543 543 HOH HOH A . L 5 HOH 244 544 544 HOH HOH A . L 5 HOH 245 545 545 HOH HOH A . L 5 HOH 246 546 546 HOH HOH A . L 5 HOH 247 547 547 HOH HOH A . L 5 HOH 248 548 548 HOH HOH A . L 5 HOH 249 549 549 HOH HOH A . L 5 HOH 250 550 550 HOH HOH A . L 5 HOH 251 551 551 HOH HOH A . L 5 HOH 252 552 552 HOH HOH A . L 5 HOH 253 554 554 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 16 ? P ? A G 2 P 2 1 Y 1 A G 16 ? OP1 ? A G 2 OP1 3 1 Y 1 A G 16 ? OP2 ? A G 2 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 3GOG _cell.length_a 132.510 _cell.length_b 35.120 _cell.length_c 41.760 _cell.angle_alpha 90.00 _cell.angle_beta 90.57 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GOG _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3GOG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '25 % PEG 3K, 640 mM ammonium acetate, 12 mM cobalt hexammine, 10 mM K+, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 3K' ? ? ? 1 2 1 'ammonium acetate' ? ? ? 1 3 1 'cobalt hexammine' ? ? ? 1 4 1 K+ ? ? ? 1 5 2 'PEG 3K' ? ? ? 1 6 2 'ammonium acetate' ? ? ? 1 7 2 'cobalt hexammine' ? ? ? 1 8 2 K+ ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-01-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3GOG _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.1 _reflns.number_obs 11321 _reflns.number_all ? _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.B_iso_Wilson_estimate 27.8 _reflns.pdbx_redundancy 4.91 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.352 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 4.94 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1095 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GOG _refine.ls_number_reflns_obs 11311 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 489340.30 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.97 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.220 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.220 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.6 _refine.ls_number_reflns_R_free 854 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.0 _refine.aniso_B[1][1] -1.20 _refine.aniso_B[2][2] -4.00 _refine.aniso_B[3][3] 5.20 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -5.77 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 25 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GOG _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1380 _refine_hist.pdbx_number_atoms_ligand 71 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 1704 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 19.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.61 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1699 _refine_ls_shell.R_factor_R_work 0.287 _refine_ls_shell.percent_reflns_obs 97.5 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 7.0 _refine_ls_shell.number_reflns_R_free 127 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise.param dna-rna_rep_revise.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 cohex_rep.param cohex_rep.top 'X-RAY DIFFRACTION' 5 acetate.param acetate.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3GOG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3GOG _struct.title 'Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GOG _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'riboswitch, mRNA, guanine, RNA-ligand complex, double helix, three-way junction, base triple, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GOG _struct_ref.pdbx_db_accession 3GOG _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GOG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GOG _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 21 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 21 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 21 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog19 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog20 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog38 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 37 A C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog44 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog52 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog56 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog57 hydrog ? ? A C 36 N4 ? ? ? 1_555 A C 61 O2 ? ? A C 50 A C 75 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog58 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog75 hydrog ? ? A G 48 N2 ? ? ? 1_555 A U 49 O4 ? ? A G 62 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6GU 91 ? 9 'BINDING SITE FOR RESIDUE 6GU A 91' AC2 Software A ACT 96 ? 5 'BINDING SITE FOR RESIDUE ACT A 96' AC3 Software A NCO 101 ? 9 'BINDING SITE FOR RESIDUE NCO A 101' AC4 Software A NCO 102 ? 9 'BINDING SITE FOR RESIDUE NCO A 102' AC5 Software A NCO 103 ? 12 'BINDING SITE FOR RESIDUE NCO A 103' AC6 Software A NCO 104 ? 10 'BINDING SITE FOR RESIDUE NCO A 104' AC7 Software A NCO 105 ? 11 'BINDING SITE FOR RESIDUE NCO A 105' AC8 Software A NCO 107 ? 7 'BINDING SITE FOR RESIDUE NCO A 107' AC9 Software A NCO 108 ? 6 'BINDING SITE FOR RESIDUE NCO A 108' BC1 Software A NCO 112 ? 6 'BINDING SITE FOR RESIDUE NCO A 112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 G A 7 ? G A 21 . ? 1_555 ? 2 AC1 9 U A 8 ? U A 22 . ? 1_555 ? 3 AC1 9 U A 33 ? U A 47 . ? 1_555 ? 4 AC1 9 U A 37 ? U A 51 . ? 1_555 ? 5 AC1 9 A A 38 ? A A 52 . ? 1_555 ? 6 AC1 9 A A 59 ? A A 73 . ? 1_555 ? 7 AC1 9 C A 60 ? C A 74 . ? 1_555 ? 8 AC1 9 C A 61 ? C A 75 . ? 1_555 ? 9 AC1 9 HOH L . ? HOH A 343 . ? 1_555 ? 10 AC2 5 G A 18 ? G A 32 . ? 1_555 ? 11 AC2 5 A A 19 ? A A 33 . ? 1_555 ? 12 AC2 5 G A 24 ? G A 38 . ? 1_555 ? 13 AC2 5 C A 25 ? C A 39 . ? 1_555 ? 14 AC2 5 HOH L . ? HOH A 329 . ? 1_555 ? 15 AC3 9 G A 15 ? G A 29 . ? 4_545 ? 16 AC3 9 U A 16 ? U A 30 . ? 4_545 ? 17 AC3 9 A A 52 ? A A 66 . ? 1_555 ? 18 AC3 9 U A 53 ? U A 67 . ? 1_555 ? 19 AC3 9 HOH L . ? HOH A 322 . ? 1_555 ? 20 AC3 9 HOH L . ? HOH A 358 . ? 1_555 ? 21 AC3 9 HOH L . ? HOH A 390 . ? 4_545 ? 22 AC3 9 HOH L . ? HOH A 405 . ? 4_555 ? 23 AC3 9 HOH L . ? HOH A 435 . ? 1_555 ? 24 AC4 9 G A 24 ? G A 38 . ? 1_555 ? 25 AC4 9 C A 25 ? C A 39 . ? 1_555 ? 26 AC4 9 G A 42 ? G A 56 . ? 1_555 ? 27 AC4 9 G A 43 ? G A 57 . ? 4_556 ? 28 AC4 9 C A 44 ? C A 58 . ? 4_556 ? 29 AC4 9 HOH L . ? HOH A 312 . ? 1_555 ? 30 AC4 9 HOH L . ? HOH A 428 . ? 1_555 ? 31 AC4 9 HOH L . ? HOH A 464 . ? 1_555 ? 32 AC4 9 HOH L . ? HOH A 530 . ? 1_555 ? 33 AC5 12 C A 25 ? C A 39 . ? 1_555 ? 34 AC5 12 G A 41 ? G A 55 . ? 1_555 ? 35 AC5 12 G A 42 ? G A 56 . ? 1_555 ? 36 AC5 12 G A 43 ? G A 57 . ? 1_555 ? 37 AC5 12 G A 54 ? G A 68 . ? 1_555 ? 38 AC5 12 U A 55 ? U A 69 . ? 1_555 ? 39 AC5 12 HOH L . ? HOH A 307 . ? 1_555 ? 40 AC5 12 HOH L . ? HOH A 341 . ? 1_555 ? 41 AC5 12 HOH L . ? HOH A 348 . ? 1_555 ? 42 AC5 12 HOH L . ? HOH A 371 . ? 1_555 ? 43 AC5 12 HOH L . ? HOH A 415 . ? 1_555 ? 44 AC5 12 HOH L . ? HOH A 481 . ? 1_555 ? 45 AC6 10 U A 16 ? U A 30 . ? 1_555 ? 46 AC6 10 G A 17 ? G A 31 . ? 1_555 ? 47 AC6 10 G A 18 ? G A 32 . ? 1_555 ? 48 AC6 10 A A 51 ? A A 65 . ? 1_555 ? 49 AC6 10 A A 52 ? A A 66 . ? 1_555 ? 50 AC6 10 HOH L . ? HOH A 306 . ? 1_555 ? 51 AC6 10 HOH L . ? HOH A 311 . ? 1_555 ? 52 AC6 10 HOH L . ? HOH A 334 . ? 1_555 ? 53 AC6 10 HOH L . ? HOH A 469 . ? 1_555 ? 54 AC6 10 HOH L . ? HOH A 480 . ? 1_555 ? 55 AC7 11 G A 23 ? G A 37 . ? 1_555 ? 56 AC7 11 G A 24 ? G A 38 . ? 1_555 ? 57 AC7 11 HOH L . ? HOH A 320 . ? 1_555 ? 58 AC7 11 HOH L . ? HOH A 324 . ? 1_555 ? 59 AC7 11 HOH L . ? HOH A 365 . ? 1_555 ? 60 AC7 11 HOH L . ? HOH A 375 . ? 1_555 ? 61 AC7 11 HOH L . ? HOH A 408 . ? 1_555 ? 62 AC7 11 HOH L . ? HOH A 413 . ? 1_555 ? 63 AC7 11 HOH L . ? HOH A 444 . ? 1_555 ? 64 AC7 11 HOH L . ? HOH A 505 . ? 1_555 ? 65 AC7 11 HOH L . ? HOH A 547 . ? 1_555 ? 66 AC8 7 C A 27 ? C A 41 . ? 1_555 ? 67 AC8 7 G A 28 ? G A 42 . ? 1_555 ? 68 AC8 7 C A 39 ? C A 53 . ? 1_555 ? 69 AC8 7 C A 40 ? C A 54 . ? 1_555 ? 70 AC8 7 HOH L . ? HOH A 326 . ? 1_555 ? 71 AC8 7 HOH L . ? HOH A 335 . ? 1_555 ? 72 AC8 7 HOH L . ? HOH A 404 . ? 1_555 ? 73 AC9 6 G A 32 ? G A 46 . ? 1_555 ? 74 AC9 6 U A 33 ? U A 47 . ? 1_555 ? 75 AC9 6 C A 36 ? C A 50 . ? 1_555 ? 76 AC9 6 U A 37 ? U A 51 . ? 1_555 ? 77 AC9 6 HOH L . ? HOH A 384 . ? 1_555 ? 78 AC9 6 HOH L . ? HOH A 487 . ? 1_555 ? 79 BC1 6 U A 22 ? U A 36 . ? 4_546 ? 80 BC1 6 G A 28 ? G A 42 . ? 1_545 ? 81 BC1 6 C A 29 ? C A 43 . ? 1_545 ? 82 BC1 6 G A 58 ? G A 72 . ? 1_555 ? 83 BC1 6 A A 59 ? A A 73 . ? 1_555 ? 84 BC1 6 HOH L . ? HOH A 366 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 63 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 63 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 63 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.20 _pdbx_validate_rmsd_angle.angle_target_value 113.70 _pdbx_validate_rmsd_angle.angle_deviation 12.50 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 34 ? ? 0.069 'SIDE CHAIN' 2 1 G A 38 ? ? 0.064 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 15 ? A G 1 2 1 Y 1 A C 81 ? A C 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6GU CL6 CL N N 1 6GU N1 N Y N 2 6GU C2 C Y N 3 6GU N2 N N N 4 6GU N3 N Y N 5 6GU C4 C Y N 6 6GU C5 C Y N 7 6GU C6 C Y N 8 6GU N7 N Y N 9 6GU C8 C Y N 10 6GU N9 N Y N 11 6GU HN2 H N N 12 6GU HN2A H N N 13 6GU H8 H N N 14 6GU HN9 H N N 15 A OP3 O N N 16 A P P N N 17 A OP1 O N N 18 A OP2 O N N 19 A "O5'" O N N 20 A "C5'" C N N 21 A "C4'" C N R 22 A "O4'" O N N 23 A "C3'" C N S 24 A "O3'" O N N 25 A "C2'" C N R 26 A "O2'" O N N 27 A "C1'" C N R 28 A N9 N Y N 29 A C8 C Y N 30 A N7 N Y N 31 A C5 C Y N 32 A C6 C Y N 33 A N6 N N N 34 A N1 N Y N 35 A C2 C Y N 36 A N3 N Y N 37 A C4 C Y N 38 A HOP3 H N N 39 A HOP2 H N N 40 A "H5'" H N N 41 A "H5''" H N N 42 A "H4'" H N N 43 A "H3'" H N N 44 A "HO3'" H N N 45 A "H2'" H N N 46 A "HO2'" H N N 47 A "H1'" H N N 48 A H8 H N N 49 A H61 H N N 50 A H62 H N N 51 A H2 H N N 52 ACT C C N N 53 ACT O O N N 54 ACT OXT O N N 55 ACT CH3 C N N 56 ACT H1 H N N 57 ACT H2 H N N 58 ACT H3 H N N 59 C OP3 O N N 60 C P P N N 61 C OP1 O N N 62 C OP2 O N N 63 C "O5'" O N N 64 C "C5'" C N N 65 C "C4'" C N R 66 C "O4'" O N N 67 C "C3'" C N S 68 C "O3'" O N N 69 C "C2'" C N R 70 C "O2'" O N N 71 C "C1'" C N R 72 C N1 N N N 73 C C2 C N N 74 C O2 O N N 75 C N3 N N N 76 C C4 C N N 77 C N4 N N N 78 C C5 C N N 79 C C6 C N N 80 C HOP3 H N N 81 C HOP2 H N N 82 C "H5'" H N N 83 C "H5''" H N N 84 C "H4'" H N N 85 C "H3'" H N N 86 C "HO3'" H N N 87 C "H2'" H N N 88 C "HO2'" H N N 89 C "H1'" H N N 90 C H41 H N N 91 C H42 H N N 92 C H5 H N N 93 C H6 H N N 94 G OP3 O N N 95 G P P N N 96 G OP1 O N N 97 G OP2 O N N 98 G "O5'" O N N 99 G "C5'" C N N 100 G "C4'" C N R 101 G "O4'" O N N 102 G "C3'" C N S 103 G "O3'" O N N 104 G "C2'" C N R 105 G "O2'" O N N 106 G "C1'" C N R 107 G N9 N Y N 108 G C8 C Y N 109 G N7 N Y N 110 G C5 C Y N 111 G C6 C N N 112 G O6 O N N 113 G N1 N N N 114 G C2 C N N 115 G N2 N N N 116 G N3 N N N 117 G C4 C Y N 118 G HOP3 H N N 119 G HOP2 H N N 120 G "H5'" H N N 121 G "H5''" H N N 122 G "H4'" H N N 123 G "H3'" H N N 124 G "HO3'" H N N 125 G "H2'" H N N 126 G "HO2'" H N N 127 G "H1'" H N N 128 G H8 H N N 129 G H1 H N N 130 G H21 H N N 131 G H22 H N N 132 HOH O O N N 133 HOH H1 H N N 134 HOH H2 H N N 135 NCO CO CO N N 136 NCO N1 N N N 137 NCO N2 N N N 138 NCO N3 N N N 139 NCO N4 N N N 140 NCO N5 N N N 141 NCO N6 N N N 142 NCO HN11 H N N 143 NCO HN12 H N N 144 NCO HN13 H N N 145 NCO HN21 H N N 146 NCO HN22 H N N 147 NCO HN23 H N N 148 NCO HN31 H N N 149 NCO HN32 H N N 150 NCO HN33 H N N 151 NCO HN41 H N N 152 NCO HN42 H N N 153 NCO HN43 H N N 154 NCO HN51 H N N 155 NCO HN52 H N N 156 NCO HN53 H N N 157 NCO HN61 H N N 158 NCO HN62 H N N 159 NCO HN63 H N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6GU CL6 C6 sing N N 1 6GU N1 C2 doub Y N 2 6GU N1 C6 sing Y N 3 6GU C2 N2 sing N N 4 6GU C2 N3 sing Y N 5 6GU N3 C4 doub Y N 6 6GU C4 C5 sing Y N 7 6GU C4 N9 sing Y N 8 6GU C5 C6 doub Y N 9 6GU C5 N7 sing Y N 10 6GU N7 C8 doub Y N 11 6GU C8 N9 sing Y N 12 6GU N2 HN2 sing N N 13 6GU N2 HN2A sing N N 14 6GU C8 H8 sing N N 15 6GU N9 HN9 sing N N 16 A OP3 P sing N N 17 A OP3 HOP3 sing N N 18 A P OP1 doub N N 19 A P OP2 sing N N 20 A P "O5'" sing N N 21 A OP2 HOP2 sing N N 22 A "O5'" "C5'" sing N N 23 A "C5'" "C4'" sing N N 24 A "C5'" "H5'" sing N N 25 A "C5'" "H5''" sing N N 26 A "C4'" "O4'" sing N N 27 A "C4'" "C3'" sing N N 28 A "C4'" "H4'" sing N N 29 A "O4'" "C1'" sing N N 30 A "C3'" "O3'" sing N N 31 A "C3'" "C2'" sing N N 32 A "C3'" "H3'" sing N N 33 A "O3'" "HO3'" sing N N 34 A "C2'" "O2'" sing N N 35 A "C2'" "C1'" sing N N 36 A "C2'" "H2'" sing N N 37 A "O2'" "HO2'" sing N N 38 A "C1'" N9 sing N N 39 A "C1'" "H1'" sing N N 40 A N9 C8 sing Y N 41 A N9 C4 sing Y N 42 A C8 N7 doub Y N 43 A C8 H8 sing N N 44 A N7 C5 sing Y N 45 A C5 C6 sing Y N 46 A C5 C4 doub Y N 47 A C6 N6 sing N N 48 A C6 N1 doub Y N 49 A N6 H61 sing N N 50 A N6 H62 sing N N 51 A N1 C2 sing Y N 52 A C2 N3 doub Y N 53 A C2 H2 sing N N 54 A N3 C4 sing Y N 55 ACT C O doub N N 56 ACT C OXT sing N N 57 ACT C CH3 sing N N 58 ACT CH3 H1 sing N N 59 ACT CH3 H2 sing N N 60 ACT CH3 H3 sing N N 61 C OP3 P sing N N 62 C OP3 HOP3 sing N N 63 C P OP1 doub N N 64 C P OP2 sing N N 65 C P "O5'" sing N N 66 C OP2 HOP2 sing N N 67 C "O5'" "C5'" sing N N 68 C "C5'" "C4'" sing N N 69 C "C5'" "H5'" sing N N 70 C "C5'" "H5''" sing N N 71 C "C4'" "O4'" sing N N 72 C "C4'" "C3'" sing N N 73 C "C4'" "H4'" sing N N 74 C "O4'" "C1'" sing N N 75 C "C3'" "O3'" sing N N 76 C "C3'" "C2'" sing N N 77 C "C3'" "H3'" sing N N 78 C "O3'" "HO3'" sing N N 79 C "C2'" "O2'" sing N N 80 C "C2'" "C1'" sing N N 81 C "C2'" "H2'" sing N N 82 C "O2'" "HO2'" sing N N 83 C "C1'" N1 sing N N 84 C "C1'" "H1'" sing N N 85 C N1 C2 sing N N 86 C N1 C6 sing N N 87 C C2 O2 doub N N 88 C C2 N3 sing N N 89 C N3 C4 doub N N 90 C C4 N4 sing N N 91 C C4 C5 sing N N 92 C N4 H41 sing N N 93 C N4 H42 sing N N 94 C C5 C6 doub N N 95 C C5 H5 sing N N 96 C C6 H6 sing N N 97 G OP3 P sing N N 98 G OP3 HOP3 sing N N 99 G P OP1 doub N N 100 G P OP2 sing N N 101 G P "O5'" sing N N 102 G OP2 HOP2 sing N N 103 G "O5'" "C5'" sing N N 104 G "C5'" "C4'" sing N N 105 G "C5'" "H5'" sing N N 106 G "C5'" "H5''" sing N N 107 G "C4'" "O4'" sing N N 108 G "C4'" "C3'" sing N N 109 G "C4'" "H4'" sing N N 110 G "O4'" "C1'" sing N N 111 G "C3'" "O3'" sing N N 112 G "C3'" "C2'" sing N N 113 G "C3'" "H3'" sing N N 114 G "O3'" "HO3'" sing N N 115 G "C2'" "O2'" sing N N 116 G "C2'" "C1'" sing N N 117 G "C2'" "H2'" sing N N 118 G "O2'" "HO2'" sing N N 119 G "C1'" N9 sing N N 120 G "C1'" "H1'" sing N N 121 G N9 C8 sing Y N 122 G N9 C4 sing Y N 123 G C8 N7 doub Y N 124 G C8 H8 sing N N 125 G N7 C5 sing Y N 126 G C5 C6 sing N N 127 G C5 C4 doub Y N 128 G C6 O6 doub N N 129 G C6 N1 sing N N 130 G N1 C2 sing N N 131 G N1 H1 sing N N 132 G C2 N2 sing N N 133 G C2 N3 doub N N 134 G N2 H21 sing N N 135 G N2 H22 sing N N 136 G N3 C4 sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 NCO CO N1 sing N N 140 NCO CO N2 sing N N 141 NCO CO N3 sing N N 142 NCO CO N4 sing N N 143 NCO CO N5 sing N N 144 NCO CO N6 sing N N 145 NCO N1 HN11 sing N N 146 NCO N1 HN12 sing N N 147 NCO N1 HN13 sing N N 148 NCO N2 HN21 sing N N 149 NCO N2 HN22 sing N N 150 NCO N2 HN23 sing N N 151 NCO N3 HN31 sing N N 152 NCO N3 HN32 sing N N 153 NCO N3 HN33 sing N N 154 NCO N4 HN41 sing N N 155 NCO N4 HN42 sing N N 156 NCO N4 HN43 sing N N 157 NCO N5 HN51 sing N N 158 NCO N5 HN52 sing N N 159 NCO N5 HN53 sing N N 160 NCO N6 HN61 sing N N 161 NCO N6 HN62 sing N N 162 NCO N6 HN63 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GOG 'double helix' 3GOG 'a-form double helix' 3GOG 'mismatched base pair' 3GOG 'internal loop' 3GOG 'triple helix' 3GOG 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 66 1_555 -0.063 -0.108 -0.134 4.938 -15.227 -0.177 1 A_G16:C80_A A 16 ? A 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 0.080 -0.068 -0.147 3.496 -16.535 1.569 2 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.049 -0.062 -0.047 2.911 -17.923 0.716 3 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 0.036 -0.189 0.361 1.075 -10.105 3.654 4 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 -0.054 -0.086 0.247 -11.750 -15.100 2.944 5 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A G 7 1_555 A C 61 1_555 -0.106 -0.060 0.037 2.498 -13.775 1.006 6 A_G21:C75_A A 21 ? A 75 ? 19 1 1 A U 37 1_555 A U 33 1_555 -3.955 -0.882 0.576 -34.206 44.286 -64.856 7 A_U51:U47_A A 51 ? A 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 -0.102 -0.065 0.173 -11.223 2.881 3.436 8 A_A52:U22_A A 52 ? A 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 0.157 -0.084 -0.097 14.477 3.604 -1.593 9 A_C53:G46_A A 53 ? A 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 -0.008 -0.128 0.147 8.914 -12.751 4.518 10 A_U25:A45_A A 25 ? A 45 ? 20 1 1 A C 12 1_555 A A 30 1_555 -1.770 0.288 0.130 3.481 -13.938 11.675 11 A_C26:A44_A A 26 ? A 44 ? ? 1 1 A G 13 1_555 A C 29 1_555 -0.097 -0.123 0.081 -6.393 -9.098 0.526 12 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 0.155 -0.093 0.010 3.498 -9.564 1.691 13 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.291 -0.137 0.227 3.052 -11.609 0.280 14 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 -0.011 -0.145 0.035 0.516 -5.254 2.798 15 A_U30:A40_A A 30 ? A 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 -0.172 -0.162 0.106 5.108 -4.312 0.444 16 A_G31:C39_A A 31 ? A 39 ? 19 1 1 A C 40 1_555 A G 58 1_555 0.312 -0.172 0.322 -2.279 -15.531 2.061 17 A_C54:G72_A A 54 ? A 72 ? 19 1 1 A G 41 1_555 A C 57 1_555 -0.109 -0.165 0.229 -4.852 -10.128 -3.492 18 A_G55:C71_A A 55 ? A 71 ? 19 1 1 A G 42 1_555 A C 56 1_555 -0.208 -0.144 0.029 -1.105 -12.519 -3.212 19 A_G56:C70_A A 56 ? A 70 ? 19 1 1 A G 43 1_555 A U 55 1_555 -2.223 -0.778 0.209 0.452 -12.702 -4.727 20 A_G57:U69_A A 57 ? A 69 ? 28 1 1 A C 44 1_555 A G 54 1_555 0.048 -0.154 0.189 -0.272 -14.244 -0.040 21 A_C58:G68_A A 58 ? A 68 ? 19 1 1 A A 45 1_555 A U 53 1_555 0.111 -0.016 0.066 -2.690 -8.635 2.075 22 A_A59:U67_A A 59 ? A 67 ? 20 1 1 A C 46 1_555 A G 24 1_555 0.138 -0.094 0.490 -16.864 -12.198 0.240 23 A_C60:G38_A A 60 ? A 38 ? 19 1 1 A C 47 1_555 A G 23 1_555 0.142 -0.241 0.790 -5.220 -8.666 -2.825 24 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A A 50 1_555 A A 21 1_555 4.292 1.151 0.519 0.955 5.487 -108.367 25 A_A64:A35_A A 64 ? A 35 ? 5 4 1 A G 48 1_555 A U 49 1_555 7.991 1.428 0.863 -3.620 7.501 14.838 26 A_G62:U63_A A 62 ? A 63 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.254 -1.314 3.277 -1.588 8.043 34.253 -3.323 0.193 2.912 13.419 2.649 35.192 1 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 1.163 -1.664 3.150 2.710 8.870 26.868 -5.232 -1.808 2.583 18.406 -5.623 28.396 2 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 -0.106 -1.618 3.057 -2.885 12.167 33.495 -4.144 -0.183 2.347 20.255 4.803 35.690 3 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 -0.043 -1.273 3.568 2.086 16.792 32.394 -4.377 0.359 2.610 27.855 -3.460 36.442 4 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A G 7 1_555 A C 61 1_555 0.592 -1.528 2.790 3.904 16.342 27.827 -4.880 -0.548 1.718 30.693 -7.333 32.420 5 AA_U20G21:C75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A G 7 1_555 A C 61 1_555 A U 37 1_555 A U 33 1_555 -1.671 6.485 2.274 15.678 5.890 158.606 3.288 0.880 2.293 2.996 -7.976 158.837 6 AA_G21U51:U47C75_AA A 21 ? A 75 ? A 51 ? A 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 -0.172 -1.101 3.041 -5.210 23.341 6.632 -7.497 -0.700 -0.180 72.928 16.279 24.805 7 AA_U51A52:U22U47_AA A 51 ? A 47 ? A 52 ? A 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 1.970 -0.096 2.680 2.755 11.194 44.833 -0.920 -2.313 2.694 14.397 -3.544 46.217 8 AA_A52C53:G46U22_AA A 52 ? A 22 ? A 53 ? A 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -2.073 -0.361 3.250 -11.099 0.032 52.320 -0.404 1.564 3.589 0.036 12.428 53.403 9 AA_C53U25:A45G46_AA A 53 ? A 46 ? A 25 ? A 45 ? 1 A U 11 1_555 A A 31 1_555 A C 12 1_555 A A 30 1_555 -0.046 -2.388 3.008 -3.820 9.706 25.192 -6.990 -0.658 1.956 21.135 8.317 27.234 10 AA_U25C26:A44A45_AA A 25 ? A 45 ? A 26 ? A 44 ? 1 A C 12 1_555 A A 30 1_555 A G 13 1_555 A C 29 1_555 -0.582 -1.643 3.496 -1.357 8.602 36.666 -3.682 0.723 3.065 13.442 2.121 37.651 11 AA_C26G27:C43A44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.723 -2.512 3.090 2.918 3.853 25.245 -6.626 -0.887 2.747 8.713 -6.598 25.696 12 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.699 -1.967 3.070 -3.047 9.186 27.575 -5.614 0.819 2.367 18.563 6.157 29.193 13 AA_C28G29:C41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 -0.122 -1.381 3.350 -0.316 11.272 32.666 -4.001 0.158 2.738 19.336 0.543 34.507 14 AA_G29U30:A40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 0.647 -1.716 3.160 -1.265 1.639 32.286 -3.354 -1.374 3.044 2.944 2.272 32.351 15 AA_U30G31:C39A40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A C 40 1_555 A G 58 1_555 A G 41 1_555 A C 57 1_555 -0.796 -1.617 3.119 0.685 7.833 33.137 -3.882 1.458 2.662 13.498 -1.180 34.032 16 AA_C54G55:C71G72_AA A 54 ? A 72 ? A 55 ? A 71 ? 1 A G 41 1_555 A C 57 1_555 A G 42 1_555 A C 56 1_555 -0.166 -0.770 3.187 1.437 8.297 31.475 -2.741 0.532 2.885 14.963 -2.592 32.555 17 AA_G55G56:C70C71_AA A 55 ? A 71 ? A 56 ? A 70 ? 1 A G 42 1_555 A C 56 1_555 A G 43 1_555 A U 55 1_555 -0.028 -1.365 3.040 -5.943 9.150 27.405 -4.379 -1.045 2.423 18.415 11.961 29.458 18 AA_G56G57:U69C70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A G 43 1_555 A U 55 1_555 A C 44 1_555 A G 54 1_555 0.406 -1.217 3.249 -0.632 1.842 42.508 -1.860 -0.623 3.190 2.539 0.871 42.551 19 AA_G57C58:G68U69_AA A 57 ? A 69 ? A 58 ? A 68 ? 1 A C 44 1_555 A G 54 1_555 A A 45 1_555 A U 53 1_555 0.477 -1.714 3.237 0.792 3.772 33.911 -3.497 -0.692 3.045 6.441 -1.352 34.123 20 AA_C58A59:U67G68_AA A 58 ? A 68 ? A 59 ? A 67 ? 1 A A 45 1_555 A U 53 1_555 A C 46 1_555 A G 24 1_555 2.148 -0.492 3.321 5.439 6.847 55.424 -0.929 -1.963 3.423 7.311 -5.807 56.055 21 AA_A59C60:G38U67_AA A 59 ? A 67 ? A 60 ? A 38 ? 1 A C 46 1_555 A G 24 1_555 A C 47 1_555 A G 23 1_555 -0.540 -0.612 3.107 -3.185 7.592 28.264 -2.728 0.425 2.890 15.145 6.354 29.415 22 AA_C60C61:G37G38_AA A 60 ? A 38 ? A 61 ? A 37 ? 1 A C 47 1_555 A G 23 1_555 A A 50 1_555 A A 21 1_555 -3.564 -0.688 4.296 -68.893 158.690 164.974 -0.604 1.669 4.363 79.373 34.458 179.085 23 AA_C61A64:A35G37_AA A 61 ? A 37 ? A 64 ? A 35 ? 1 A A 50 1_555 A A 21 1_555 A G 48 1_555 A U 49 1_555 -2.897 -3.721 2.739 19.098 -172.976 65.561 0.053 1.661 4.325 -87.848 -9.699 174.979 24 AA_A64G62:U63A35_AA A 64 ? A 35 ? A 62 ? A 63 ? # _atom_sites.entry_id 3GOG _atom_sites.fract_transf_matrix[1][1] 0.007547 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000075 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028474 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023948 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL CO N O P # loop_