HEADER OXIDOREDUCTASE 19-MAR-09 3GOH TITLE CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE SUPERFAMILY PROTEIN TITLE 2 (NP_718042.1) FROM SHEWANELLA ONEIDENSIS AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE, ZINC-CONTAINING; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: NP_718042.1, SO_2452; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_718042.1, ALCOHOL DEHYDROGENASE SUPERFAMILY PROTEIN, ALCOHOL KEYWDS 2 DEHYDROGENASE GROES-LIKE DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GOH 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GOH 1 REMARK LINK REVDAT 3 01-NOV-17 3GOH 1 REMARK REVDAT 2 13-JUL-11 3GOH 1 VERSN REVDAT 1 31-MAR-09 3GOH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE SUPERFAMILY JRNL TITL 2 PROTEIN (NP_718042.1) FROM SHEWANELLA ONEIDENSIS AT 1.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 48559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2454 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1589 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3367 ; 1.696 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3929 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;40.679 ;25.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;12.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2766 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 467 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1531 ; 2.144 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 617 ; 0.609 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2486 ; 3.409 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 923 ; 5.112 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 863 ; 7.443 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5026 6.6092 14.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: 0.0108 REMARK 3 T33: 0.0113 T12: -0.0030 REMARK 3 T13: 0.0094 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.9562 L22: 0.2184 REMARK 3 L33: 1.0770 L12: 0.1370 REMARK 3 L13: 0.6945 L23: 0.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.0383 S13: -0.0401 REMARK 3 S21: 0.0527 S22: 0.0080 S23: 0.0325 REMARK 3 S31: 0.0258 S32: 0.0102 S33: -0.0477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. GLYCEROLS (GOL) USED AS CRYOPROTECTANT WERE MODELED INTO THE REMARK 3 STRUTURE. 5. RAMANCHANDRAN OUTLIER BY RESIDUE A123 IS SUPPORTED REMARK 3 BY DENSITY. REMARK 4 REMARK 4 3GOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954, 0.91837, 0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT MIRROR, VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 27.597 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% ETHANOL, 0.1M TRIS-HCL REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.03400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.02300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.03400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.02300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 323 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 205 REMARK 465 VAL A 206 REMARK 465 ASN A 207 REMARK 465 SER A 208 REMARK 465 GLN A 209 REMARK 465 ASN A 210 REMARK 465 ALA A 211 REMARK 465 ILE A 231 REMARK 465 PRO A 232 REMARK 465 ALA A 233 REMARK 465 PRO A 234 REMARK 465 ILE A 235 REMARK 465 ASP A 236 REMARK 465 PRO A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 THR A 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 75 CD CE NZ REMARK 470 SER A 78 OG REMARK 470 LYS A 79 CE NZ REMARK 470 ARG A 93 CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 182 CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 259 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 552 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 54.60 39.28 REMARK 500 ARG A 186 -70.78 -79.25 REMARK 500 LYS A 305 14.41 51.17 REMARK 500 ASN A 313 56.87 -106.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 316 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394266 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GOH A 1 314 UNP Q8EED0 Q8EED0_SHEON 1 314 SEQADV 3GOH GLY A 0 UNP Q8EED0 EXPRESSION TAG SEQRES 1 A 315 GLY MSE GLU GLN HIS GLN VAL TRP ALA TYR GLN THR LYS SEQRES 2 A 315 THR HIS SER VAL THR LEU ASN SER VAL ASP ILE PRO ALA SEQRES 3 A 315 LEU ALA ALA ASP ASP ILE LEU VAL GLN ASN GLN ALA ILE SEQRES 4 A 315 GLY ILE ASN PRO VAL ASP TRP LYS PHE ILE LYS ALA ASN SEQRES 5 A 315 PRO ILE ASN TRP SER ASN GLY HIS VAL PRO GLY VAL ASP SEQRES 6 A 315 GLY ALA GLY VAL ILE VAL LYS VAL GLY ALA LYS VAL ASP SEQRES 7 A 315 SER LYS MSE LEU GLY ARG ARG VAL ALA TYR HIS THR SER SEQRES 8 A 315 LEU LYS ARG HIS GLY SER PHE ALA GLU PHE THR VAL LEU SEQRES 9 A 315 ASN THR ASP ARG VAL MSE THR LEU PRO ASP ASN LEU SER SEQRES 10 A 315 PHE GLU ARG ALA ALA ALA LEU PRO CYS PRO LEU LEU THR SEQRES 11 A 315 ALA TRP GLN ALA PHE GLU LYS ILE PRO LEU THR LYS GLN SEQRES 12 A 315 ARG GLU VAL LEU ILE VAL GLY PHE GLY ALA VAL ASN ASN SEQRES 13 A 315 LEU LEU THR GLN MSE LEU ASN ASN ALA GLY TYR VAL VAL SEQRES 14 A 315 ASP LEU VAL SER ALA SER LEU SER GLN ALA LEU ALA ALA SEQRES 15 A 315 LYS ARG GLY VAL ARG HIS LEU TYR ARG GLU PRO SER GLN SEQRES 16 A 315 VAL THR GLN LYS TYR PHE ALA ILE PHE ASP ALA VAL ASN SEQRES 17 A 315 SER GLN ASN ALA ALA ALA LEU VAL PRO SER LEU LYS ALA SEQRES 18 A 315 ASN GLY HIS ILE ILE CYS ILE GLN ASP ARG ILE PRO ALA SEQRES 19 A 315 PRO ILE ASP PRO ALA PHE THR ARG THR ILE SER TYR HIS SEQRES 20 A 315 GLU ILE ALA LEU GLY ALA LEU HIS ASP PHE GLY ASP ARG SEQRES 21 A 315 GLN ASP TRP GLN ILE LEU MSE GLN GLN GLY GLU ALA LEU SEQRES 22 A 315 LEU THR LEU ILE ALA GLN GLY LYS MSE GLU ILE ALA ALA SEQRES 23 A 315 PRO ASP ILE PHE ARG PHE GLU GLN MSE ILE GLU ALA LEU SEQRES 24 A 315 ASP HIS SER GLU GLN THR LYS LEU LYS THR VAL LEU THR SEQRES 25 A 315 LEU ASN GLU MODRES 3GOH MSE A 1 MET SELENOMETHIONINE MODRES 3GOH MSE A 80 MET SELENOMETHIONINE MODRES 3GOH MSE A 109 MET SELENOMETHIONINE MODRES 3GOH MSE A 160 MET SELENOMETHIONINE MODRES 3GOH MSE A 266 MET SELENOMETHIONINE MODRES 3GOH MSE A 281 MET SELENOMETHIONINE MODRES 3GOH MSE A 294 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 80 8 HET MSE A 109 8 HET MSE A 160 8 HET MSE A 266 8 HET MSE A 281 8 HET MSE A 294 8 HET GOL A 315 6 HET GOL A 316 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *236(H2 O) HELIX 1 1 ASN A 41 ASN A 51 1 11 HELIX 2 2 ASP A 77 LEU A 81 5 5 HELIX 3 3 SER A 116 ALA A 122 1 7 HELIX 4 4 LEU A 123 GLU A 135 1 13 HELIX 5 5 GLY A 151 GLY A 165 1 15 HELIX 6 6 SER A 176 GLY A 184 1 9 HELIX 7 7 GLU A 191 VAL A 195 5 5 HELIX 8 8 LEU A 214 PRO A 216 5 3 HELIX 9 9 ALA A 249 GLY A 251 5 3 HELIX 10 10 ALA A 252 GLY A 257 1 6 HELIX 11 11 ASP A 258 GLN A 278 1 21 HELIX 12 12 GLN A 293 LYS A 305 1 13 SHEET 1 A 2 GLN A 3 GLN A 10 0 SHEET 2 A 2 SER A 15 ASP A 22 -1 O SER A 15 N GLN A 10 SHEET 1 B 5 PHE A 100 ASN A 104 0 SHEET 2 B 5 ASP A 30 ILE A 40 -1 N ILE A 31 O LEU A 103 SHEET 3 B 5 ASP A 64 VAL A 72 -1 O VAL A 68 N GLN A 34 SHEET 4 B 5 ARG A 84 HIS A 88 -1 O VAL A 85 N GLY A 67 SHEET 5 B 5 VAL A 108 THR A 110 -1 O MSE A 109 N ALA A 86 SHEET 1 C 4 PHE A 100 ASN A 104 0 SHEET 2 C 4 ASP A 30 ILE A 40 -1 N ILE A 31 O LEU A 103 SHEET 3 C 4 THR A 308 THR A 311 -1 O LEU A 310 N ILE A 38 SHEET 4 C 4 ASP A 287 ARG A 290 1 N PHE A 289 O THR A 311 SHEET 1 D 6 VAL A 185 TYR A 189 0 SHEET 2 D 6 VAL A 167 VAL A 171 1 N VAL A 168 O ARG A 186 SHEET 3 D 6 GLU A 144 VAL A 148 1 N VAL A 145 O VAL A 167 SHEET 4 D 6 TYR A 199 ASP A 204 1 O PHE A 203 N LEU A 146 SHEET 5 D 6 LEU A 218 ILE A 227 1 O ILE A 227 N ASP A 204 SHEET 6 D 6 SER A 244 ILE A 248 1 O HIS A 246 N CYS A 226 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C LYS A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N LEU A 81 1555 1555 1.33 LINK C VAL A 108 N MSE A 109 1555 1555 1.32 LINK C MSE A 109 N THR A 110 1555 1555 1.31 LINK C GLN A 159 N MSE A 160 1555 1555 1.32 LINK C MSE A 160 N LEU A 161 1555 1555 1.33 LINK C LEU A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N GLN A 267 1555 1555 1.35 LINK C LYS A 280 N MSE A 281 1555 1555 1.30 LINK C MSE A 281 N GLU A 282 1555 1555 1.33 LINK C GLN A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N ILE A 295 1555 1555 1.34 SITE 1 AC1 1 ARG A 143 SITE 1 AC2 7 HIS A 88 ASP A 229 ALA A 249 LEU A 250 SITE 2 AC2 7 GLY A 251 HOH A 345 HOH A 367 CRYST1 98.068 52.046 68.936 90.00 95.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010197 0.000000 0.000944 0.00000 SCALE2 0.000000 0.019214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014568 0.00000 HETATM 1 N MSE A 1 12.114 4.406 -1.084 1.00 52.13 N HETATM 2 CA MSE A 1 11.240 4.483 0.116 1.00 49.24 C HETATM 3 C MSE A 1 11.247 3.167 0.887 1.00 47.89 C HETATM 4 O MSE A 1 11.582 3.123 2.055 1.00 49.45 O HETATM 5 CB MSE A 1 9.803 4.848 -0.290 1.00 51.18 C