HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAR-09 3GOR TITLE CRYSTAL STRUCTURE OF PUTATIVE METAL-DEPENDENT HYDROLASE APC36150 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METAL-DEPENDENT HYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, DINB SUPERFAMILY, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, INTEGRATED CENTER FOR STRUCTURE AND FUNCTION INNOVATION, KEYWDS 3 ISFI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,K.GRELEWSKA,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AUTHOR 2 AND FUNCTION INNOVATION (ISFI) REVDAT 4 01-NOV-17 3GOR 1 REMARK REVDAT 3 23-MAR-10 3GOR 1 JRNL REVDAT 2 02-JUN-09 3GOR 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 1 19-MAY-09 3GOR 0 SPRSDE 19-MAY-09 3GOR 3E4X JRNL AUTH D.R.COOPER,K.GRELEWSKA,C.Y.KIM,A.JOACHIMIAK,Z.S.DEREWENDA JRNL TITL THE STRUCTURE OF DINB FROM GEOBACILLUS STEAROTHERMOPHILUS: A JRNL TITL 2 REPRESENTATIVE OF A UNIQUE FOUR-HELIX-BUNDLE SUPERFAMILY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 219 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20208147 JRNL DOI 10.1107/S1744309109053913 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 36943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6230 - 5.8970 1.00 2924 134 0.1680 0.1850 REMARK 3 2 5.8970 - 4.6840 1.00 2930 131 0.1470 0.2030 REMARK 3 3 4.6840 - 4.0930 1.00 2913 148 0.1430 0.2290 REMARK 3 4 4.0930 - 3.7190 1.00 2896 182 0.1580 0.2060 REMARK 3 5 3.7190 - 3.4530 1.00 2902 156 0.1810 0.2350 REMARK 3 6 3.4530 - 3.2490 1.00 2874 175 0.1920 0.2510 REMARK 3 7 3.2490 - 3.0870 1.00 2889 156 0.2100 0.2430 REMARK 3 8 3.0870 - 2.9530 0.97 2871 141 0.2130 0.2980 REMARK 3 9 2.9530 - 2.8390 0.92 2693 141 0.2390 0.2900 REMARK 3 10 2.8390 - 2.7410 0.86 2460 155 0.2260 0.3240 REMARK 3 11 2.7410 - 2.6550 0.82 2385 130 0.2400 0.3310 REMARK 3 12 2.6550 - 2.5790 0.78 2283 125 0.2540 0.2890 REMARK 3 13 2.5790 - 2.5110 0.71 2036 113 0.2650 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 53.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.04700 REMARK 3 B22 (A**2) : 8.91900 REMARK 3 B33 (A**2) : -3.87200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5199 REMARK 3 ANGLE : 0.908 7014 REMARK 3 CHIRALITY : 0.081 762 REMARK 3 PLANARITY : 0.004 893 REMARK 3 DIHEDRAL : 16.978 1888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 1.0218 67.4305 76.0942 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.4770 REMARK 3 T33: -0.0436 T12: 0.1208 REMARK 3 T13: -0.0861 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 3.2665 L22: 1.8770 REMARK 3 L33: 1.4519 L12: 0.3925 REMARK 3 L13: 2.5103 L23: 1.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.2240 S12: -1.0453 S13: 0.1723 REMARK 3 S21: 0.0366 S22: -0.1518 S23: 0.0701 REMARK 3 S31: -0.2617 S32: -0.5228 S33: 0.2247 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.8450 46.5247 70.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.3645 REMARK 3 T33: 0.3075 T12: 0.0057 REMARK 3 T13: -0.0054 T23: 0.1809 REMARK 3 L TENSOR REMARK 3 L11: 3.6346 L22: 1.1754 REMARK 3 L33: 2.0833 L12: 1.6297 REMARK 3 L13: 1.2150 L23: 0.3947 REMARK 3 S TENSOR REMARK 3 S11: 0.2161 S12: -0.7039 S13: -1.0450 REMARK 3 S21: 0.1103 S22: -0.0898 S23: -0.4118 REMARK 3 S31: -0.0427 S32: 0.0722 S33: -0.0828 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -7.2617 13.6427 39.1621 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.3858 REMARK 3 T33: 0.0923 T12: -0.0378 REMARK 3 T13: -0.0152 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 5.2337 L22: 1.4696 REMARK 3 L33: -0.2096 L12: 0.3328 REMARK 3 L13: 1.0780 L23: -0.3944 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: 1.2868 S13: 0.5636 REMARK 3 S21: -0.3387 S22: 0.1624 S23: 0.1898 REMARK 3 S31: 0.0612 S32: -0.0920 S33: -0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 14.4591 13.3105 45.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.3905 REMARK 3 T33: 0.1385 T12: -0.0103 REMARK 3 T13: -0.0121 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.6461 L22: 1.4562 REMARK 3 L33: 0.3679 L12: 0.5253 REMARK 3 L13: 0.3310 L23: -0.2257 REMARK 3 S TENSOR REMARK 3 S11: -0.1772 S12: 0.5063 S13: 0.0248 REMARK 3 S21: -0.1601 S22: 0.0778 S23: -0.0937 REMARK 3 S31: -0.0327 S32: 0.3304 S33: 0.0818 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:152) REMARK 3 SELECTION : CHAIN B AND (RESID 3:152) REMARK 3 ATOM PAIRS NUMBER : 1234 REMARK 3 RMSD : 0.043 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:152) REMARK 3 SELECTION : CHAIN C AND (RESID 3:152) REMARK 3 ATOM PAIRS NUMBER : 1234 REMARK 3 RMSD : 0.039 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:152) REMARK 3 SELECTION : CHAIN D AND (RESID 3:152) REMARK 3 ATOM PAIRS NUMBER : 1234 REMARK 3 RMSD : 0.041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 4 REMARK 4 3GOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.7760 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM ACETATE, 0.1 M IMIDAZOLE REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.23850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.62800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.62800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.23850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 153 REMARK 465 GLY C 154 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ARG D 153 REMARK 465 GLY D 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 72 O GLY B 141 3556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 66.04 98.15 REMARK 500 THR A 76 -55.53 77.64 REMARK 500 THR B 76 -54.14 78.19 REMARK 500 ARG B 153 1.47 -44.18 REMARK 500 ASN C -1 141.90 -37.43 REMARK 500 THR C 76 -53.80 77.20 REMARK 500 THR D 76 -55.72 78.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HIS A 127 NE2 89.6 REMARK 620 3 HIS A 131 NE2 83.6 88.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HIS B 127 NE2 92.7 REMARK 620 3 HIS B 131 NE2 87.5 86.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 47 NE2 REMARK 620 2 HIS C 127 NE2 81.5 REMARK 620 3 HIS C 131 NE2 85.6 79.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 47 NE2 REMARK 620 2 HIS D 127 NE2 89.3 REMARK 620 3 HIS D 131 NE2 88.9 85.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ISFI154 RELATED DB: TARGETDB DBREF 3GOR A 1 154 PDB 3GOR 3GOR 1 154 DBREF 3GOR B 1 154 PDB 3GOR 3GOR 1 154 DBREF 3GOR C 1 154 PDB 3GOR 3GOR 1 154 DBREF 3GOR D 1 154 PDB 3GOR 3GOR 1 154 SEQADV 3GOR SER A -2 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ASN A -1 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ALA A 0 PDB 3GOR EXPRESSION TAG SEQADV 3GOR SER B -2 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ASN B -1 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ALA B 0 PDB 3GOR EXPRESSION TAG SEQADV 3GOR SER C -2 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ASN C -1 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ALA C 0 PDB 3GOR EXPRESSION TAG SEQADV 3GOR SER D -2 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ASN D -1 PDB 3GOR EXPRESSION TAG SEQADV 3GOR ALA D 0 PDB 3GOR EXPRESSION TAG SEQRES 1 A 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 A 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 A 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 A 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 A 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 A 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 A 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 A 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 A 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 A 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 A 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 A 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 A 157 GLY SEQRES 1 B 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 B 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 B 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 B 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 B 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 B 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 B 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 B 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 B 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 B 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 B 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 B 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 B 157 GLY SEQRES 1 C 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 C 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 C 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 C 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 C 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 C 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 C 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 C 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 C 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 C 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 C 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 C 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 C 157 GLY SEQRES 1 D 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 D 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 D 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 D 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 D 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 D 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 D 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 D 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 D 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 D 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 D 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 D 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 D 157 GLY MODRES 3GOR MSE A 1 MET SELENOMETHIONINE MODRES 3GOR MSE A 19 MET SELENOMETHIONINE MODRES 3GOR MSE A 39 MET SELENOMETHIONINE MODRES 3GOR MSE A 48 MET SELENOMETHIONINE MODRES 3GOR MSE A 96 MET SELENOMETHIONINE MODRES 3GOR MSE A 115 MET SELENOMETHIONINE MODRES 3GOR MSE A 125 MET SELENOMETHIONINE MODRES 3GOR MSE A 142 MET SELENOMETHIONINE MODRES 3GOR MSE B 1 MET SELENOMETHIONINE MODRES 3GOR MSE B 19 MET SELENOMETHIONINE MODRES 3GOR MSE B 39 MET SELENOMETHIONINE MODRES 3GOR MSE B 48 MET SELENOMETHIONINE MODRES 3GOR MSE B 96 MET SELENOMETHIONINE MODRES 3GOR MSE B 115 MET SELENOMETHIONINE MODRES 3GOR MSE B 125 MET SELENOMETHIONINE MODRES 3GOR MSE B 142 MET SELENOMETHIONINE MODRES 3GOR MSE C 1 MET SELENOMETHIONINE MODRES 3GOR MSE C 19 MET SELENOMETHIONINE MODRES 3GOR MSE C 39 MET SELENOMETHIONINE MODRES 3GOR MSE C 48 MET SELENOMETHIONINE MODRES 3GOR MSE C 96 MET SELENOMETHIONINE MODRES 3GOR MSE C 115 MET SELENOMETHIONINE MODRES 3GOR MSE C 125 MET SELENOMETHIONINE MODRES 3GOR MSE C 142 MET SELENOMETHIONINE MODRES 3GOR MSE D 19 MET SELENOMETHIONINE MODRES 3GOR MSE D 39 MET SELENOMETHIONINE MODRES 3GOR MSE D 48 MET SELENOMETHIONINE MODRES 3GOR MSE D 96 MET SELENOMETHIONINE MODRES 3GOR MSE D 115 MET SELENOMETHIONINE MODRES 3GOR MSE D 125 MET SELENOMETHIONINE MODRES 3GOR MSE D 142 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 39 8 HET MSE A 48 8 HET MSE A 96 8 HET MSE A 115 8 HET MSE A 125 8 HET MSE A 142 8 HET MSE B 1 8 HET MSE B 19 8 HET MSE B 39 8 HET MSE B 48 8 HET MSE B 96 8 HET MSE B 115 8 HET MSE B 125 8 HET MSE B 142 8 HET MSE C 1 8 HET MSE C 19 8 HET MSE C 39 8 HET MSE C 48 8 HET MSE C 96 8 HET MSE C 115 8 HET MSE C 125 8 HET MSE C 142 8 HET MSE D 19 8 HET MSE D 39 8 HET MSE D 48 8 HET MSE D 96 8 HET MSE D 115 8 HET MSE D 125 8 HET MSE D 142 8 HET NI A 200 1 HET NI B 200 1 HET NI C 200 1 HET NI D 200 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 31(C5 H11 N O2 SE) FORMUL 5 NI 4(NI 2+) FORMUL 9 HOH *58(H2 O) HELIX 1 1 SER A 2 LYS A 24 1 23 HELIX 2 2 ILE A 25 TYR A 30 5 6 HELIX 3 3 THR A 40 HIS A 61 1 22 HELIX 4 4 ASP A 63 GLN A 69 5 7 HELIX 5 5 ASN A 77 SER A 95 1 19 HELIX 6 6 ASP A 99 ASP A 102 5 4 HELIX 7 7 LEU A 107 GLY A 112 1 6 HELIX 8 8 THR A 117 GLY A 143 1 27 HELIX 9 9 SER B 2 LYS B 24 1 23 HELIX 10 10 ILE B 25 TYR B 30 5 6 HELIX 11 11 THR B 40 HIS B 61 1 22 HELIX 12 12 ASP B 63 GLN B 69 5 7 HELIX 13 13 ASN B 77 SER B 95 1 19 HELIX 14 14 ASP B 99 ASP B 102 5 4 HELIX 15 15 LEU B 107 GLY B 112 1 6 HELIX 16 16 THR B 117 MSE B 142 1 26 HELIX 17 17 SER C 2 LYS C 24 1 23 HELIX 18 18 ILE C 25 TYR C 30 5 6 HELIX 19 19 THR C 40 HIS C 61 1 22 HELIX 20 20 ASP C 63 GLN C 69 5 7 HELIX 21 21 ASN C 77 SER C 95 1 19 HELIX 22 22 ASP C 99 ASP C 102 5 4 HELIX 23 23 LEU C 107 GLY C 112 1 6 HELIX 24 24 THR C 117 MSE C 142 1 26 HELIX 25 25 SER D 2 LYS D 24 1 23 HELIX 26 26 ILE D 25 TYR D 30 5 6 HELIX 27 27 THR D 40 HIS D 61 1 22 HELIX 28 28 ASP D 63 GLN D 69 5 7 HELIX 29 29 ASN D 77 SER D 95 1 19 HELIX 30 30 ASP D 99 ASP D 102 5 4 HELIX 31 31 LEU D 107 GLY D 112 1 6 HELIX 32 32 THR D 117 MSE D 142 1 26 SHEET 1 A 2 THR A 104 ASP A 106 0 SHEET 2 A 2 GLN A 114 SER A 116 -1 O MSE A 115 N LEU A 105 SHEET 1 B 2 THR B 104 ASP B 106 0 SHEET 2 B 2 GLN B 114 SER B 116 -1 O MSE B 115 N LEU B 105 SHEET 1 C 2 THR C 104 ASP C 106 0 SHEET 2 C 2 GLN C 114 SER C 116 -1 O MSE C 115 N LEU C 105 SHEET 1 D 2 THR D 104 ASP D 106 0 SHEET 2 D 2 GLN D 114 SER D 116 -1 O MSE D 115 N LEU D 105 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C THR A 18 N MSE A 19 1555 1555 1.32 LINK C MSE A 19 N GLU A 20 1555 1555 1.33 LINK C SER A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N THR A 40 1555 1555 1.33 LINK C HIS A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N LEU A 49 1555 1555 1.32 LINK C SER A 95 N MSE A 96 1555 1555 1.32 LINK C MSE A 96 N SER A 97 1555 1555 1.33 LINK C GLN A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N SER A 116 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N ASP A 126 1555 1555 1.32 LINK C GLY A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLY A 143 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C THR B 18 N MSE B 19 1555 1555 1.32 LINK C MSE B 19 N GLU B 20 1555 1555 1.32 LINK C SER B 38 N MSE B 39 1555 1555 1.32 LINK C MSE B 39 N THR B 40 1555 1555 1.33 LINK C HIS B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N LEU B 49 1555 1555 1.33 LINK C SER B 95 N MSE B 96 1555 1555 1.32 LINK C MSE B 96 N SER B 97 1555 1555 1.33 LINK C GLN B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N SER B 116 1555 1555 1.33 LINK C ALA B 124 N MSE B 125 1555 1555 1.32 LINK C MSE B 125 N ASP B 126 1555 1555 1.33 LINK C GLY B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLY B 143 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N SER C 2 1555 1555 1.33 LINK C THR C 18 N MSE C 19 1555 1555 1.32 LINK C MSE C 19 N GLU C 20 1555 1555 1.33 LINK C SER C 38 N MSE C 39 1555 1555 1.33 LINK C MSE C 39 N THR C 40 1555 1555 1.33 LINK C HIS C 47 N MSE C 48 1555 1555 1.33 LINK C MSE C 48 N LEU C 49 1555 1555 1.33 LINK C SER C 95 N MSE C 96 1555 1555 1.33 LINK C MSE C 96 N SER C 97 1555 1555 1.33 LINK C GLN C 114 N MSE C 115 1555 1555 1.33 LINK C MSE C 115 N SER C 116 1555 1555 1.33 LINK C ALA C 124 N MSE C 125 1555 1555 1.33 LINK C MSE C 125 N ASP C 126 1555 1555 1.33 LINK C GLY C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N GLY C 143 1555 1555 1.33 LINK C THR D 18 N MSE D 19 1555 1555 1.32 LINK C MSE D 19 N GLU D 20 1555 1555 1.33 LINK C SER D 38 N MSE D 39 1555 1555 1.33 LINK C MSE D 39 N THR D 40 1555 1555 1.33 LINK C HIS D 47 N MSE D 48 1555 1555 1.33 LINK C MSE D 48 N LEU D 49 1555 1555 1.33 LINK C SER D 95 N MSE D 96 1555 1555 1.33 LINK C MSE D 96 N SER D 97 1555 1555 1.33 LINK C GLN D 114 N MSE D 115 1555 1555 1.33 LINK C MSE D 115 N SER D 116 1555 1555 1.33 LINK C ALA D 124 N MSE D 125 1555 1555 1.32 LINK C MSE D 125 N ASP D 126 1555 1555 1.34 LINK C GLY D 141 N MSE D 142 1555 1555 1.33 LINK C MSE D 142 N GLY D 143 1555 1555 1.33 LINK NE2 HIS A 47 NI NI A 200 1555 1555 2.31 LINK NE2 HIS A 127 NI NI A 200 1555 1555 2.10 LINK NE2 HIS A 131 NI NI A 200 1555 1555 2.26 LINK NE2 HIS B 47 NI NI B 200 1555 1555 2.07 LINK NE2 HIS B 127 NI NI B 200 1555 1555 2.16 LINK NE2 HIS B 131 NI NI B 200 1555 1555 2.24 LINK NE2 HIS C 47 NI NI C 200 1555 1555 2.21 LINK NE2 HIS C 127 NI NI C 200 1555 1555 2.44 LINK NE2 HIS C 131 NI NI C 200 1555 1555 2.26 LINK NE2 HIS D 47 NI NI D 200 1555 1555 2.17 LINK NE2 HIS D 127 NI NI D 200 1555 1555 2.27 LINK NE2 HIS D 131 NI NI D 200 1555 1555 2.19 SITE 1 AC1 3 HIS A 47 HIS A 127 HIS A 131 SITE 1 AC2 5 SER B -2 HIS B 47 HIS B 127 HIS B 131 SITE 2 AC2 5 HOH B 164 SITE 1 AC3 4 SER C -2 HIS C 47 HIS C 127 HIS C 131 SITE 1 AC4 4 SER A -2 HIS D 47 HIS D 127 HIS D 131 CRYST1 68.477 71.470 123.256 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008113 0.00000