HEADER HYDROLASE/DNA 23-MAR-09 3GP8 TITLE CRYSTAL STRUCTURE OF THE BINARY COMPLEX OF RECD2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE V, SUBUNIT RECD, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 151-715; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-TERMINUS DELETION MUTANT OF RECD2; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3'; COMPND 9 CHAIN: X; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SINGLE-STRANDED OLIGO-DT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279; SOURCE 5 ATCC: 13939; SOURCE 6 GENE: DR_1902, RECD; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHETIC DNA KEYWDS ALPHA AND BETA PROTEIN, ATP-BINDING, NUCLEOTIDE-BINDING, HELICASE, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SAIKRISHNAN,N.COOK,D.B.WIGLEY REVDAT 3 06-SEP-23 3GP8 1 DBREF SEQADV REVDAT 2 13-JUL-11 3GP8 1 VERSN REVDAT 1 16-JUN-09 3GP8 0 JRNL AUTH K.SAIKRISHNAN,B.POWELL,N.J.COOK,M.R.WEBB,D.B.WIGLEY JRNL TITL MECHANISTIC BASIS OF 5'-3' TRANSLOCATION IN SF1B HELICASES. JRNL REF CELL(CAMBRIDGE,MASS.) V. 137 849 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19490894 JRNL DOI 10.1016/J.CELL.2009.03.036 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SAIKRISHNAN,S.P.GRIFFITHS,N.COOK,R.COURT,D.B.WIGLEY REMARK 1 TITL DNA BINDING TO RECD: ROLE OF THE 1B DOMAIN IN SF1B HELICASE REMARK 1 TITL 2 ACTIVITY. REMARK 1 REF EMBO J. V. 27 2222 2008 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 18668125 REMARK 1 DOI 10.1038/EMBOJ.2008.144 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4088 REMARK 3 NUCLEIC ACID ATOMS : 157 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.519 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4329 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2870 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5910 ; 1.146 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6976 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 5.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;32.779 ;22.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;17.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4779 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 850 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1028 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3073 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2047 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2358 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.045 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9837 9.5636 -42.4718 REMARK 3 T TENSOR REMARK 3 T11: -0.2849 T22: -0.2055 REMARK 3 T33: -0.1578 T12: 0.0611 REMARK 3 T13: -0.0769 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.3149 L22: 2.3001 REMARK 3 L33: 2.2183 L12: -0.0202 REMARK 3 L13: -0.0998 L23: 0.5304 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: 0.2824 S13: -0.0533 REMARK 3 S21: -0.2490 S22: 0.0129 S23: 0.2034 REMARK 3 S31: -0.0749 S32: -0.2216 S33: 0.0620 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 327 A 489 REMARK 3 RESIDUE RANGE : A 701 A 716 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9569 22.6366 -16.1142 REMARK 3 T TENSOR REMARK 3 T11: -0.0430 T22: -0.2480 REMARK 3 T33: -0.2409 T12: -0.0095 REMARK 3 T13: 0.0198 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.4151 L22: 4.5338 REMARK 3 L33: 4.5404 L12: -0.3843 REMARK 3 L13: 0.3879 L23: 0.4929 REMARK 3 S TENSOR REMARK 3 S11: -0.1142 S12: -0.1756 S13: 0.0124 REMARK 3 S21: 0.9552 S22: -0.0290 S23: 0.1210 REMARK 3 S31: -0.3863 S32: -0.1777 S33: 0.1432 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 490 A 575 REMARK 3 RESIDUE RANGE : A 636 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1763 -5.0031 -15.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: -0.2005 REMARK 3 T33: -0.1892 T12: 0.0183 REMARK 3 T13: -0.1239 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.9330 L22: 6.9531 REMARK 3 L33: 3.2418 L12: 2.1845 REMARK 3 L13: -1.2152 L23: -0.3652 REMARK 3 S TENSOR REMARK 3 S11: 0.2525 S12: -0.3854 S13: -0.2186 REMARK 3 S21: 1.5393 S22: -0.2607 S23: -0.6169 REMARK 3 S31: 0.1977 S32: 0.2474 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 576 A 635 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4194 -8.4169 -8.9057 REMARK 3 T TENSOR REMARK 3 T11: 0.7684 T22: 0.2997 REMARK 3 T33: 0.4160 T12: -0.0917 REMARK 3 T13: 0.6412 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 6.3091 L22: 19.4287 REMARK 3 L33: 6.8301 L12: -8.4254 REMARK 3 L13: -0.0331 L23: -7.4290 REMARK 3 S TENSOR REMARK 3 S11: -0.6407 S12: -0.7304 S13: -0.8849 REMARK 3 S21: 2.3558 S22: 0.7898 S23: 2.4109 REMARK 3 S31: 0.1982 S32: -1.3588 S33: -0.1491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.17500 REMARK 200 R SYM FOR SHELL (I) : 0.17500 REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3E1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 2-6% ETHYLENE GLYCOL, REMARK 280 100MM TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.09000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.09000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 150 REMARK 465 SER A 151 REMARK 465 GLN A 152 REMARK 465 ALA A 286 REMARK 465 GLY A 323 REMARK 465 ALA A 324 REMARK 465 GLY A 325 REMARK 465 ASN A 326 REMARK 465 ASP A 597 REMARK 465 TYR A 598 REMARK 465 ASN A 599 REMARK 465 ASN A 600 REMARK 465 GLU A 601 REMARK 465 PHE A 622 REMARK 465 ASP A 623 REMARK 465 GLY A 624 REMARK 465 GLU A 717 REMARK 465 HIS A 718 REMARK 465 HIS A 719 REMARK 465 HIS A 720 REMARK 465 HIS A 721 REMARK 465 HIS A 722 REMARK 465 HIS A 723 REMARK 465 DT X -5 REMARK 465 DT X -4 REMARK 465 DT X -3 REMARK 465 DT X -2 REMARK 465 DT X -1 REMARK 465 DT X 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 ILE A 602 CG1 CG2 CD1 REMARK 470 LEU A 611 CG CD1 CD2 REMARK 470 ASP A 621 CG OD1 OD2 REMARK 470 GLU A 628 CG CD OE1 OE2 REMARK 470 LEU A 629 CG CD1 CD2 REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 LEU A 716 CG CD1 CD2 REMARK 470 DT X 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 362 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 DT X 2 C5 - C4 - O4 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 238 6.65 -152.61 REMARK 500 LEU A 283 -101.18 66.59 REMARK 500 ASN A 422 -164.70 -169.47 REMARK 500 LEU A 474 57.25 -140.07 REMARK 500 THR A 489 -39.88 -133.61 REMARK 500 GLU A 575 -76.60 -90.55 REMARK 500 ILE A 580 -160.77 -129.11 REMARK 500 ASN A 636 39.17 -94.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GPL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF RECD2 WITH DNA AND ADPNP REMARK 900 RELATED ID: 3E1S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN N-TERMINAL TRUNCATION OF DEINOCOCCUS REMARK 900 RADIODURANS RECD2 (NATIVE STRUCTURE) DBREF 3GP8 A 151 715 UNP Q9RT63 Q9RT63_DEIRA 151 715 DBREF 3GP8 X -5 8 PDB 3GP8 3GP8 -5 8 SEQADV 3GP8 MET A 150 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 LEU A 716 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 GLU A 717 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 718 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 719 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 720 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 721 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 722 UNP Q9RT63 EXPRESSION TAG SEQADV 3GP8 HIS A 723 UNP Q9RT63 EXPRESSION TAG SEQRES 1 A 574 MET SER GLN GLN GLY LEU GLU ARG ARG LEU LEU ALA GLY SEQRES 2 A 574 LEU GLN GLY LEU GLY LEU THR ILE ASN GLN ALA GLN ARG SEQRES 3 A 574 ALA VAL LYS HIS PHE GLY ALA ASP ALA LEU ASP ARG LEU SEQRES 4 A 574 GLU LYS ASP LEU PHE THR LEU THR GLU VAL GLU GLY ILE SEQRES 5 A 574 GLY PHE LEU THR ALA ASP LYS LEU TRP GLN ALA ARG GLY SEQRES 6 A 574 GLY ALA LEU ASP ASP PRO ARG ARG LEU THR ALA ALA ALA SEQRES 7 A 574 VAL TYR ALA LEU GLN LEU ALA GLY THR GLN ALA GLY HIS SEQRES 8 A 574 SER PHE LEU PRO ARG SER ARG ALA GLU LYS GLY VAL VAL SEQRES 9 A 574 HIS TYR THR ARG VAL THR PRO GLY GLN ALA ARG LEU ALA SEQRES 10 A 574 VAL GLU THR ALA VAL GLU LEU GLY ARG LEU SER GLU ASP SEQRES 11 A 574 ASP SER PRO LEU PHE ALA ALA GLU ALA ALA ALA THR GLY SEQRES 12 A 574 GLU GLY ARG ILE TYR LEU PRO HIS VAL LEU ARG ALA GLU SEQRES 13 A 574 LYS LYS LEU ALA SER LEU ILE ARG THR LEU LEU ALA THR SEQRES 14 A 574 PRO PRO ALA ASP GLY ALA GLY ASN ASP ASP TRP ALA VAL SEQRES 15 A 574 PRO LYS LYS ALA ARG LYS GLY LEU SER GLU GLU GLN ALA SEQRES 16 A 574 SER VAL LEU ASP GLN LEU ALA GLY HIS ARG LEU VAL VAL SEQRES 17 A 574 LEU THR GLY GLY PRO GLY THR GLY LYS SER THR THR THR SEQRES 18 A 574 LYS ALA VAL ALA ASP LEU ALA GLU SER LEU GLY LEU GLU SEQRES 19 A 574 VAL GLY LEU CYS ALA PRO THR GLY LYS ALA ALA ARG ARG SEQRES 20 A 574 LEU GLY GLU VAL THR GLY ARG THR ALA SER THR VAL HIS SEQRES 21 A 574 ARG LEU LEU GLY TYR GLY PRO GLN GLY PHE ARG HIS ASN SEQRES 22 A 574 HIS LEU GLU PRO ALA PRO TYR ASP LEU LEU ILE VAL ASP SEQRES 23 A 574 GLU VAL SER MET MET GLY ASP ALA LEU MET LEU SER LEU SEQRES 24 A 574 LEU ALA ALA VAL PRO PRO GLY ALA ARG VAL LEU LEU VAL SEQRES 25 A 574 GLY ASP THR ASP GLN LEU PRO PRO VAL ASP ALA GLY LEU SEQRES 26 A 574 PRO LEU LEU ALA LEU ALA GLN ALA ALA PRO THR ILE LYS SEQRES 27 A 574 LEU THR GLN VAL TYR ARG GLN ALA ALA LYS ASN PRO ILE SEQRES 28 A 574 ILE GLN ALA ALA HIS GLY LEU LEU HIS GLY GLU ALA PRO SEQRES 29 A 574 ALA TRP GLY ASP LYS ARG LEU ASN LEU THR GLU ILE GLU SEQRES 30 A 574 PRO ASP GLY GLY ALA ARG ARG VAL ALA LEU MET VAL ARG SEQRES 31 A 574 GLU LEU GLY GLY PRO GLY ALA VAL GLN VAL LEU THR PRO SEQRES 32 A 574 MET ARG LYS GLY PRO LEU GLY MET ASP HIS LEU ASN TYR SEQRES 33 A 574 HIS LEU GLN ALA LEU PHE ASN PRO GLY GLU GLY GLY VAL SEQRES 34 A 574 ARG ILE ALA GLU GLY GLU ALA ARG PRO GLY ASP THR VAL SEQRES 35 A 574 VAL GLN THR LYS ASN ASP TYR ASN ASN GLU ILE PHE ASN SEQRES 36 A 574 GLY THR LEU GLY MET VAL LEU LYS ALA GLU GLY ALA ARG SEQRES 37 A 574 LEU THR VAL ASP PHE ASP GLY ASN VAL VAL GLU LEU THR SEQRES 38 A 574 GLY ALA GLU LEU PHE ASN LEU GLN LEU GLY TYR ALA LEU SEQRES 39 A 574 THR VAL HIS ARG ALA GLN GLY SER GLU TRP GLY THR VAL SEQRES 40 A 574 LEU GLY VAL LEU HIS GLU ALA HIS MET PRO MET LEU SER SEQRES 41 A 574 ARG ASN LEU VAL TYR THR ALA LEU THR ARG ALA ARG ASP SEQRES 42 A 574 ARG PHE PHE SER ALA GLY SER ALA SER ALA TRP GLN ILE SEQRES 43 A 574 ALA ALA ALA ARG GLN ARG GLU ALA ARG ASN THR ALA LEU SEQRES 44 A 574 LEU GLU ARG ILE ARG ALA HIS LEU GLU HIS HIS HIS HIS SEQRES 45 A 574 HIS HIS SEQRES 1 X 14 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 X 14 DT FORMUL 3 HOH *190(H2 O) HELIX 1 1 GLU A 156 LEU A 166 1 11 HELIX 2 2 THR A 169 GLY A 181 1 13 HELIX 3 3 ASP A 183 ASP A 191 1 9 HELIX 4 4 LEU A 192 VAL A 198 5 7 HELIX 5 5 GLY A 202 ARG A 213 1 12 HELIX 6 6 ASP A 219 GLY A 239 1 21 HELIX 7 7 ARG A 245 ARG A 257 1 13 HELIX 8 8 THR A 259 LEU A 273 1 15 HELIX 9 9 LEU A 298 THR A 318 1 21 HELIX 10 10 PRO A 332 LYS A 337 5 6 HELIX 11 11 SER A 340 HIS A 353 1 14 HELIX 12 12 GLY A 365 LEU A 380 1 16 HELIX 13 13 THR A 390 GLY A 402 1 13 HELIX 14 14 VAL A 408 LEU A 412 1 5 HELIX 15 15 GLU A 436 MET A 440 5 5 HELIX 16 16 GLY A 441 ALA A 451 1 11 HELIX 17 17 LEU A 474 ALA A 483 1 10 HELIX 18 18 TYR A 492 LYS A 497 1 6 HELIX 19 19 ASN A 498 LEU A 508 1 11 HELIX 20 20 GLY A 529 GLY A 542 1 14 HELIX 21 21 GLY A 559 ASN A 572 1 14 HELIX 22 22 ALA A 632 PHE A 635 5 4 HELIX 23 23 VAL A 645 GLN A 649 1 5 HELIX 24 24 HIS A 661 LEU A 668 5 8 HELIX 25 25 SER A 669 ARG A 679 1 11 HELIX 26 26 SER A 689 ARG A 699 1 11 HELIX 27 27 ALA A 707 LEU A 716 1 10 SHEET 1 A 3 LEU A 243 PRO A 244 0 SHEET 2 A 3 ARG A 295 TYR A 297 -1 O ILE A 296 N LEU A 243 SHEET 3 A 3 SER A 277 ASP A 279 -1 N ASP A 279 O ARG A 295 SHEET 1 B 6 ALA A 405 THR A 407 0 SHEET 2 B 6 VAL A 384 ALA A 388 1 N LEU A 386 O SER A 406 SHEET 3 B 6 LEU A 431 VAL A 434 1 O ILE A 433 N GLY A 385 SHEET 4 B 6 ARG A 457 GLY A 462 1 O LEU A 459 N LEU A 432 SHEET 5 B 6 LEU A 355 GLY A 360 1 N LEU A 358 O LEU A 460 SHEET 6 B 6 THR A 485 LEU A 488 1 O LEU A 488 N THR A 359 SHEET 1 C 2 TYR A 414 GLY A 415 0 SHEET 2 C 2 GLY A 418 PHE A 419 -1 O GLY A 418 N GLY A 415 SHEET 1 D 5 LEU A 520 GLU A 524 0 SHEET 2 D 5 ALA A 680 GLY A 688 1 O SER A 686 N THR A 523 SHEET 3 D 5 TRP A 653 LEU A 660 1 N GLY A 658 O PHE A 685 SHEET 4 D 5 GLN A 548 THR A 551 1 N LEU A 550 O VAL A 659 SHEET 5 D 5 ALA A 642 THR A 644 1 O LEU A 643 N VAL A 549 SHEET 1 E 2 VAL A 578 ARG A 579 0 SHEET 2 E 2 GLU A 584 ALA A 585 -1 O ALA A 585 N VAL A 578 SHEET 1 F 2 VAL A 591 GLN A 593 0 SHEET 2 F 2 LEU A 637 LEU A 639 -1 O GLN A 638 N VAL A 592 SHEET 1 G 2 VAL A 610 GLU A 614 0 SHEET 2 G 2 ARG A 617 VAL A 620 -1 O THR A 619 N LYS A 612 CRYST1 54.140 90.320 142.180 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007033 0.00000