HEADER SIGNALING PROTEIN 23-MAR-09 3GPE TITLE CRYSTAL STRUCTURE ANALYSIS OF PKC (ALPHA)-C2 DOMAIN COMPLEXED WITH TITLE 2 CA2+ AND PTDINS(4,5)P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C ALPHA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN, UNP RESIDUES 156-292; COMPND 5 SYNONYM: PKC-ALPHA, PKC-A; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 STRAIN: NORWAY RAT; SOURCE 6 GENE: PRKCA, PKCA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS CALCIUM/PHOSPHOLIPID BINDING DOMAIN, C2 DOMAIN, PHOSPHATIDIL SERINE, KEYWDS 2 PROTEIN KINASE, ATP-BINDING, KINASE, METAL-BINDING, NUCLEOTIDE- KEYWDS 3 BINDING, PHORBOL-ESTER BINDING, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 4 PROTEIN KINASE, TRANSFERASE, ZINC-FINGER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.FERRER-ORTA,J.QUEROL-AUDI,I.FITA,N.VERDAGUER REVDAT 5 03-APR-24 3GPE 1 REMARK REVDAT 4 21-FEB-24 3GPE 1 COMPND REMARK HETNAM LINK REVDAT 3 13-JUL-11 3GPE 1 VERSN REVDAT 2 09-JUN-10 3GPE 1 JRNL REVDAT 1 05-MAY-09 3GPE 0 JRNL AUTH M.GUERRERO-VALERO,C.FERRER-ORTA,J.QUEROL-AUDI, JRNL AUTH 2 C.MARIN-VICENTE,I.FITA,J.C.GOMEZ-FERNANDEZ,N.VERDAGUER, JRNL AUTH 3 S.CORBALAN-GARCIA JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO THE ASSOCIATION OF JRNL TITL 2 PKCALPHA-C2 DOMAIN TO PTDINS(4,5)P2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 6603 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19346474 JRNL DOI 10.1073/PNAS.0813099106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1180 ; 0.002 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1603 ; 0.707 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 4.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;27.332 ;24.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ; 9.422 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 862 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 688 ; 0.131 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 0.259 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 492 ; 0.384 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 480 ; 0.641 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6670 -13.9270 9.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0303 REMARK 3 T33: 0.0308 T12: 0.0358 REMARK 3 T13: 0.0334 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.7297 L22: 4.2690 REMARK 3 L33: 5.1862 L12: -1.6464 REMARK 3 L13: -1.8974 L23: 2.2970 REMARK 3 S TENSOR REMARK 3 S11: 0.4083 S12: 0.3566 S13: 0.3663 REMARK 3 S21: -0.2308 S22: -0.1464 S23: -0.0635 REMARK 3 S31: -0.3689 S32: -0.3045 S33: -0.2618 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 96 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46400 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: C2 DOMAIN FROM PROTEIN KINASE C (ALPHA) COMPLEXED REMARK 200 WITH CA2+ AND PHOSPHATIDYLSERINE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 50MM POTASSIUM REMARK 280 PHOSPHATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.31933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.15967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.15967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.31933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN A 279 O HOH A 36 1.19 REMARK 500 OE1 GLU A 157 NZ LYS A 276 1.69 REMARK 500 OD1 ASN A 206 NZ LYS A 209 1.76 REMARK 500 NZ LYS A 209 O13 PT5 A 600 1.82 REMARK 500 ND2 ASN A 206 CE LYS A 209 1.89 REMARK 500 CD ARG A 238 O HOH A 22 1.90 REMARK 500 O THR A 169 O HOH A 48 1.95 REMARK 500 C THR A 169 O HOH A 48 1.99 REMARK 500 CB LYS A 209 O HOH A 26 2.01 REMARK 500 N THR A 156 O GLY A 160 2.06 REMARK 500 OG1 THR A 156 CD ARG A 161 2.07 REMARK 500 CA THR A 251 O HOH A 30 2.10 REMARK 500 N ASP A 170 O HOH A 48 2.12 REMARK 500 O THR A 250 O HOH A 30 2.15 REMARK 500 ND2 ASN A 206 NZ LYS A 209 2.16 REMARK 500 CG LYS A 209 O HOH A 26 2.18 REMARK 500 CG2 THR A 156 O HOH A 24 2.19 REMARK 500 CB ASP A 170 O HOH A 48 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 235 NH2 ARG A 249 5445 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 157 88.85 176.29 REMARK 500 LYS A 158 -46.96 87.47 REMARK 500 ASP A 170 103.20 21.51 REMARK 500 GLU A 171 -43.78 97.44 REMARK 500 ARG A 178 -75.75 -81.41 REMARK 500 LEU A 191 -154.54 -115.15 REMARK 500 ASN A 206 64.62 60.61 REMARK 500 MET A 269 107.23 166.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PT5 A 600 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 186 O REMARK 620 2 ASP A 187 OD1 80.7 REMARK 620 3 ASP A 246 OD2 99.3 84.7 REMARK 620 4 ASP A 248 OD1 148.3 67.7 76.8 REMARK 620 5 ASP A 248 OD2 154.9 115.2 101.4 52.3 REMARK 620 6 ASP A 254 OD2 85.6 166.1 95.3 126.0 78.5 REMARK 620 7 HOH A 304 O 86.4 83.9 166.3 91.8 76.7 97.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD1 REMARK 620 2 ASP A 187 OD2 51.1 REMARK 620 3 ASP A 193 OD2 129.2 82.7 REMARK 620 4 ASP A 246 OD1 92.3 86.3 106.0 REMARK 620 5 TRP A 247 O 151.1 157.2 78.3 87.0 REMARK 620 6 ASP A 248 OD1 72.7 123.7 147.2 95.6 78.6 REMARK 620 7 PO4 A 401 O4 85.3 96.7 80.0 173.7 92.3 78.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 248 OD2 REMARK 620 2 THR A 251 OG1 90.9 REMARK 620 3 ARG A 252 O 94.0 87.4 REMARK 620 4 ASP A 254 OD1 97.1 170.4 86.7 REMARK 620 5 ASP A 254 OD2 61.9 144.3 115.3 45.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT5 A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DSY RELATED DB: PDB REMARK 900 C2 DOMAIN FROM PROTEIN KINASE C (ALPHA) COMPLEXED WITH CA2+ AND REMARK 900 PHOSPHATIDYLSERINE REMARK 900 RELATED ID: 1GMI RELATED DB: PDB REMARK 900 STRUCTURE OF THE C2 DOMAIN FROM NOVEL PROTEIN KINASE C EPSILON DBREF 3GPE A 156 292 UNP P05696 KPCA_RAT 156 292 SEQRES 1 A 137 THR GLU LYS ARG GLY ARG ILE TYR LEU LYS ALA GLU VAL SEQRES 2 A 137 THR ASP GLU LYS LEU HIS VAL THR VAL ARG ASP ALA LYS SEQRES 3 A 137 ASN LEU ILE PRO MET ASP PRO ASN GLY LEU SER ASP PRO SEQRES 4 A 137 TYR VAL LYS LEU LYS LEU ILE PRO ASP PRO LYS ASN GLU SEQRES 5 A 137 SER LYS GLN LYS THR LYS THR ILE ARG SER THR LEU ASN SEQRES 6 A 137 PRO GLN TRP ASN GLU SER PHE THR PHE LYS LEU LYS PRO SEQRES 7 A 137 SER ASP LYS ASP ARG ARG LEU SER VAL GLU ILE TRP ASP SEQRES 8 A 137 TRP ASP ARG THR THR ARG ASN ASP PHE MET GLY SER LEU SEQRES 9 A 137 SER PHE GLY VAL SER GLU LEU MET LYS MET PRO ALA SER SEQRES 10 A 137 GLY TRP TYR LYS LEU LEU ASN GLN GLU GLU GLY GLU TYR SEQRES 11 A 137 TYR ASN VAL PRO ILE PRO GLU HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET PO4 A 401 5 HET PT5 A 600 24 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETNAM PT5 [(2R)-1-OCTADECANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R, HETNAM 2 PT5 6S)-2,3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY- HETNAM 3 PT5 CYCLOHEXYL]OXY-PHOSPHO RYL]OXY-PROPAN-2-YL] (8Z)- HETNAM 4 PT5 ICOSA-5,8,11,14-TETRAENOATE HETSYN PT5 PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE; PTDINS(4,5)P2 FORMUL 2 CA 3(CA 2+) FORMUL 5 PO4 O4 P 3- FORMUL 6 PT5 C47 H85 O19 P3 FORMUL 7 HOH *92(H2 O) HELIX 1 1 LYS A 232 ASP A 237 5 6 HELIX 2 2 VAL A 263 LYS A 268 1 6 HELIX 3 3 ASN A 279 GLU A 284 1 6 SHEET 1 A 5 GLN A 222 LYS A 230 0 SHEET 2 A 5 LYS A 172 LYS A 181 -1 N VAL A 175 O PHE A 227 SHEET 3 A 5 ARG A 161 THR A 169 -1 N LYS A 165 O THR A 176 SHEET 4 A 5 ALA A 271 LYS A 276 -1 O ALA A 271 N ALA A 166 SHEET 5 A 5 VAL A 288 PRO A 289 -1 O VAL A 288 N LYS A 276 SHEET 1 B 4 GLN A 210 LYS A 211 0 SHEET 2 B 4 PRO A 194 ILE A 201 -1 N LEU A 198 O GLN A 210 SHEET 3 B 4 ARG A 239 ASP A 246 -1 O SER A 241 N LYS A 199 SHEET 4 B 4 ASP A 254 GLY A 262 -1 O ASP A 254 N ASP A 246 LINK O MET A 186 CA CA A 501 1555 1555 2.17 LINK OD1 ASP A 187 CA CA A 501 1555 1555 2.39 LINK OD1 ASP A 187 CA CA A 502 1555 1555 2.61 LINK OD2 ASP A 187 CA CA A 502 1555 1555 2.48 LINK OD2 ASP A 193 CA CA A 502 1555 1555 2.48 LINK OD2 ASP A 246 CA CA A 501 1555 1555 2.13 LINK OD1 ASP A 246 CA CA A 502 1555 1555 2.43 LINK O TRP A 247 CA CA A 502 1555 1555 2.35 LINK OD1 ASP A 248 CA CA A 501 1555 1555 2.69 LINK OD2 ASP A 248 CA CA A 501 1555 1555 2.19 LINK OD1 ASP A 248 CA CA A 502 1555 1555 2.14 LINK OD2 ASP A 248 CA CA A 503 1555 1555 2.52 LINK OG1 THR A 251 CA CA A 503 1555 1555 2.62 LINK O ARG A 252 CA CA A 503 1555 1555 2.44 LINK OD2 ASP A 254 CA CA A 501 1555 1555 2.37 LINK OD1 ASP A 254 CA CA A 503 1555 1555 2.58 LINK OD2 ASP A 254 CA CA A 503 1555 1555 3.03 LINK O HOH A 304 CA CA A 501 1555 1555 2.57 LINK O4 PO4 A 401 CA CA A 502 1555 1555 2.64 CISPEP 1 ILE A 201 PRO A 202 0 -0.75 SITE 1 AC1 6 MET A 186 ASP A 187 ASP A 246 ASP A 248 SITE 2 AC1 6 ASP A 254 HOH A 304 SITE 1 AC2 6 ASP A 187 ASP A 193 ASP A 246 TRP A 247 SITE 2 AC2 6 ASP A 248 PO4 A 401 SITE 1 AC3 4 ASP A 248 THR A 251 ARG A 252 ASP A 254 SITE 1 AC4 9 ASP A 187 ASP A 193 GLU A 207 ARG A 216 SITE 2 AC4 9 TRP A 247 ASP A 248 ARG A 249 HOH A 335 SITE 3 AC4 9 CA A 502 SITE 1 AC5 10 HOH A 40 LYS A 172 LYS A 181 TYR A 195 SITE 2 AC5 10 LYS A 197 ASN A 206 LYS A 209 LYS A 211 SITE 3 AC5 10 ASN A 253 HOH A 316 CRYST1 57.848 57.848 90.479 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017287 0.009980 0.000000 0.00000 SCALE2 0.000000 0.019961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011052 0.00000