data_3GPR # _entry.id 3GPR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GPR RCSB RCSB052160 WWPDB D_1000052160 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GPR _pdbx_database_status.recvd_initial_deposition_date 2009-03-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # _audit_author.name 'Stetefeld, J.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'The alpha2beta1 integrin-specific antagonist rhodocetin is a cruciform, heterotetrameric molecule' _citation.journal_abbrev 'Faseb J.' _citation.journal_volume 23 _citation.page_first 2917 _citation.page_last 2927 _citation.year 2009 _citation.journal_id_ASTM FAJOEC _citation.country US _citation.journal_id_ISSN 0892-6638 _citation.journal_id_CSD 2074 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19369383 _citation.pdbx_database_id_DOI 10.1096/fj.08-126763 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Eble, J.A.' 1 primary 'Niland, S.' 2 primary 'Bracht, T.' 3 primary 'Mormann, M.' 4 primary 'Peter-Katalinic, J.' 5 primary 'Pohlentz, G.' 6 primary 'Stetefeld, J.' 7 # _cell.entry_id 3GPR _cell.length_a 83.546 _cell.length_b 83.546 _cell.length_c 196.078 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GPR _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Rhodocetin subunit alpha' 15982.993 1 ? ? ? ? 2 polymer nat 'Rhodocetin subunit beta' 15213.371 1 ? ? ? ? 3 polymer nat 'Rhodocetin subunit gamma' 15616.385 1 ? ? ? ? 4 polymer nat 'Rhodocetin subunit delta' 14737.797 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DCPDGWSSTKSYCYRPFKEKKTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRSN LEWSDGSSISYENLYEPYMEKCFLMDHQSGLPKWHTADCEEKNVFMCKFQLPR ; ;DCPDGWSSTKSYCYRPFKEKKTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRSN LEWSDGSSISYENLYEPYMEKCFLMDHQSGLPKWHTADCEEKNVFMCKFQLPR ; A ? 2 'polypeptide(L)' no no ;DFRCPTTWSASKLYCYKPFKEKKTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYRAWTGLTERNLKWT NGASVSYENLYEPYIRKCFVVQPWEGKSKWYKADCEEKNAFLCKFPKPH ; ;DFRCPTTWSASKLYCYKPFKEKKTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYRAWTGLTERNLKWT NGASVSYENLYEPYIRKCFVVQPWEGKSKWYKADCEEKNAFLCKFPKPH ; B ? 3 'polypeptide(L)' no no ;FNCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLVSIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQC SSEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQAKNPFVCKFSSEC ; ;FNCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLVSIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQC SSEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQAKNPFVCKFSSEC ; C ? 4 'polypeptide(L)' no no ;CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLKYTSMWLGLNNAWAACKWEWSD DAKLDYKVWLRRAYCAVMVVKTDRIFWYNRGCEKTVSFLCKFYS ; ;CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLKYTSMWLGLNNAWAACKWEWSD DAKLDYKVWLRRAYCAVMVVKTDRIFWYNRGCEKTVSFLCKFYS ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 CYS n 1 3 PRO n 1 4 ASP n 1 5 GLY n 1 6 TRP n 1 7 SER n 1 8 SER n 1 9 THR n 1 10 LYS n 1 11 SER n 1 12 TYR n 1 13 CYS n 1 14 TYR n 1 15 ARG n 1 16 PRO n 1 17 PHE n 1 18 LYS n 1 19 GLU n 1 20 LYS n 1 21 LYS n 1 22 THR n 1 23 TRP n 1 24 GLU n 1 25 GLU n 1 26 ALA n 1 27 GLU n 1 28 ARG n 1 29 PHE n 1 30 CYS n 1 31 THR n 1 32 GLU n 1 33 GLN n 1 34 GLU n 1 35 LYS n 1 36 GLU n 1 37 ALA n 1 38 HIS n 1 39 LEU n 1 40 VAL n 1 41 SER n 1 42 MET n 1 43 GLU n 1 44 ASN n 1 45 ARG n 1 46 LEU n 1 47 GLU n 1 48 ALA n 1 49 VAL n 1 50 PHE n 1 51 VAL n 1 52 ASP n 1 53 MET n 1 54 VAL n 1 55 MET n 1 56 GLU n 1 57 ASN n 1 58 ASN n 1 59 PHE n 1 60 GLU n 1 61 ASN n 1 62 LYS n 1 63 ILE n 1 64 TYR n 1 65 ARG n 1 66 SER n 1 67 TRP n 1 68 ILE n 1 69 GLY n 1 70 LEU n 1 71 LYS n 1 72 ILE n 1 73 GLU n 1 74 ASN n 1 75 LYS n 1 76 GLY n 1 77 GLN n 1 78 ARG n 1 79 SER n 1 80 ASN n 1 81 LEU n 1 82 GLU n 1 83 TRP n 1 84 SER n 1 85 ASP n 1 86 GLY n 1 87 SER n 1 88 SER n 1 89 ILE n 1 90 SER n 1 91 TYR n 1 92 GLU n 1 93 ASN n 1 94 LEU n 1 95 TYR n 1 96 GLU n 1 97 PRO n 1 98 TYR n 1 99 MET n 1 100 GLU n 1 101 LYS n 1 102 CYS n 1 103 PHE n 1 104 LEU n 1 105 MET n 1 106 ASP n 1 107 HIS n 1 108 GLN n 1 109 SER n 1 110 GLY n 1 111 LEU n 1 112 PRO n 1 113 LYS n 1 114 TRP n 1 115 HIS n 1 116 THR n 1 117 ALA n 1 118 ASP n 1 119 CYS n 1 120 GLU n 1 121 GLU n 1 122 LYS n 1 123 ASN n 1 124 VAL n 1 125 PHE n 1 126 MET n 1 127 CYS n 1 128 LYS n 1 129 PHE n 1 130 GLN n 1 131 LEU n 1 132 PRO n 1 133 ARG n 2 1 ASP n 2 2 PHE n 2 3 ARG n 2 4 CYS n 2 5 PRO n 2 6 THR n 2 7 THR n 2 8 TRP n 2 9 SER n 2 10 ALA n 2 11 SER n 2 12 LYS n 2 13 LEU n 2 14 TYR n 2 15 CYS n 2 16 TYR n 2 17 LYS n 2 18 PRO n 2 19 PHE n 2 20 LYS n 2 21 GLU n 2 22 LYS n 2 23 LYS n 2 24 THR n 2 25 TRP n 2 26 ILE n 2 27 GLU n 2 28 ALA n 2 29 GLU n 2 30 ARG n 2 31 PHE n 2 32 CYS n 2 33 ALA n 2 34 LYS n 2 35 GLN n 2 36 ALA n 2 37 GLU n 2 38 ASN n 2 39 GLY n 2 40 HIS n 2 41 LEU n 2 42 VAL n 2 43 SER n 2 44 ILE n 2 45 GLY n 2 46 SER n 2 47 ALA n 2 48 ALA n 2 49 GLU n 2 50 ALA n 2 51 ASP n 2 52 PHE n 2 53 LEU n 2 54 ASP n 2 55 LEU n 2 56 VAL n 2 57 ILE n 2 58 VAL n 2 59 VAL n 2 60 ASN n 2 61 PHE n 2 62 ASP n 2 63 LYS n 2 64 GLN n 2 65 ARG n 2 66 TYR n 2 67 ARG n 2 68 ALA n 2 69 TRP n 2 70 THR n 2 71 GLY n 2 72 LEU n 2 73 THR n 2 74 GLU n 2 75 ARG n 2 76 ASN n 2 77 LEU n 2 78 LYS n 2 79 TRP n 2 80 THR n 2 81 ASN n 2 82 GLY n 2 83 ALA n 2 84 SER n 2 85 VAL n 2 86 SER n 2 87 TYR n 2 88 GLU n 2 89 ASN n 2 90 LEU n 2 91 TYR n 2 92 GLU n 2 93 PRO n 2 94 TYR n 2 95 ILE n 2 96 ARG n 2 97 LYS n 2 98 CYS n 2 99 PHE n 2 100 VAL n 2 101 VAL n 2 102 GLN n 2 103 PRO n 2 104 TRP n 2 105 GLU n 2 106 GLY n 2 107 LYS n 2 108 SER n 2 109 LYS n 2 110 TRP n 2 111 TYR n 2 112 LYS n 2 113 ALA n 2 114 ASP n 2 115 CYS n 2 116 GLU n 2 117 GLU n 2 118 LYS n 2 119 ASN n 2 120 ALA n 2 121 PHE n 2 122 LEU n 2 123 CYS n 2 124 LYS n 2 125 PHE n 2 126 PRO n 2 127 LYS n 2 128 PRO n 2 129 HIS n 3 1 PHE n 3 2 ASN n 3 3 CYS n 3 4 LEU n 3 5 PRO n 3 6 GLY n 3 7 TRP n 3 8 SER n 3 9 ALA n 3 10 TYR n 3 11 ASP n 3 12 GLN n 3 13 HIS n 3 14 CYS n 3 15 TYR n 3 16 GLN n 3 17 ALA n 3 18 PHE n 3 19 ASN n 3 20 GLU n 3 21 PRO n 3 22 LYS n 3 23 THR n 3 24 TRP n 3 25 ASP n 3 26 GLU n 3 27 ALA n 3 28 GLU n 3 29 ARG n 3 30 PHE n 3 31 CYS n 3 32 THR n 3 33 GLU n 3 34 GLN n 3 35 ALA n 3 36 LYS n 3 37 ARG n 3 38 GLY n 3 39 HIS n 3 40 LEU n 3 41 VAL n 3 42 SER n 3 43 ILE n 3 44 GLY n 3 45 SER n 3 46 ASP n 3 47 GLY n 3 48 GLU n 3 49 ALA n 3 50 ASP n 3 51 PHE n 3 52 VAL n 3 53 ALA n 3 54 GLN n 3 55 LEU n 3 56 VAL n 3 57 THR n 3 58 ASN n 3 59 ASN n 3 60 ILE n 3 61 LYS n 3 62 ARG n 3 63 PRO n 3 64 GLU n 3 65 LEU n 3 66 TYR n 3 67 VAL n 3 68 TRP n 3 69 ILE n 3 70 GLY n 3 71 LEU n 3 72 ARG n 3 73 ASP n 3 74 ARG n 3 75 ARG n 3 76 LYS n 3 77 GLU n 3 78 GLN n 3 79 GLN n 3 80 CYS n 3 81 SER n 3 82 SER n 3 83 GLU n 3 84 TRP n 3 85 SER n 3 86 MET n 3 87 SER n 3 88 ALA n 3 89 SER n 3 90 ILE n 3 91 ILE n 3 92 TYR n 3 93 VAL n 3 94 ASN n 3 95 TRP n 3 96 ASN n 3 97 THR n 3 98 GLY n 3 99 GLU n 3 100 SER n 3 101 GLN n 3 102 MET n 3 103 CYS n 3 104 GLN n 3 105 GLY n 3 106 LEU n 3 107 ALA n 3 108 ARG n 3 109 TRP n 3 110 THR n 3 111 GLY n 3 112 PHE n 3 113 ARG n 3 114 LYS n 3 115 TRP n 3 116 ASP n 3 117 TYR n 3 118 SER n 3 119 ASP n 3 120 CYS n 3 121 GLN n 3 122 ALA n 3 123 LYS n 3 124 ASN n 3 125 PRO n 3 126 PHE n 3 127 VAL n 3 128 CYS n 3 129 LYS n 3 130 PHE n 3 131 SER n 3 132 SER n 3 133 GLU n 3 134 CYS n 4 1 CYS n 4 2 PRO n 4 3 LEU n 4 4 HIS n 4 5 TRP n 4 6 SER n 4 7 SER n 4 8 TYR n 4 9 ASN n 4 10 GLY n 4 11 TYR n 4 12 CYS n 4 13 TYR n 4 14 ARG n 4 15 VAL n 4 16 PHE n 4 17 SER n 4 18 GLU n 4 19 LEU n 4 20 LYS n 4 21 THR n 4 22 TRP n 4 23 GLU n 4 24 ASP n 4 25 ALA n 4 26 GLU n 4 27 SER n 4 28 PHE n 4 29 CYS n 4 30 TYR n 4 31 ALA n 4 32 GLN n 4 33 HIS n 4 34 LYS n 4 35 GLY n 4 36 SER n 4 37 ARG n 4 38 LEU n 4 39 ALA n 4 40 SER n 4 41 ILE n 4 42 HIS n 4 43 SER n 4 44 ARG n 4 45 GLU n 4 46 GLU n 4 47 GLU n 4 48 ALA n 4 49 PHE n 4 50 VAL n 4 51 GLY n 4 52 LYS n 4 53 LEU n 4 54 ALA n 4 55 SER n 4 56 GLN n 4 57 THR n 4 58 LEU n 4 59 LYS n 4 60 TYR n 4 61 THR n 4 62 SER n 4 63 MET n 4 64 TRP n 4 65 LEU n 4 66 GLY n 4 67 LEU n 4 68 ASN n 4 69 ASN n 4 70 ALA n 4 71 TRP n 4 72 ALA n 4 73 ALA n 4 74 CYS n 4 75 LYS n 4 76 TRP n 4 77 GLU n 4 78 TRP n 4 79 SER n 4 80 ASP n 4 81 ASP n 4 82 ALA n 4 83 LYS n 4 84 LEU n 4 85 ASP n 4 86 TYR n 4 87 LYS n 4 88 VAL n 4 89 TRP n 4 90 LEU n 4 91 ARG n 4 92 ARG n 4 93 ALA n 4 94 TYR n 4 95 CYS n 4 96 ALA n 4 97 VAL n 4 98 MET n 4 99 VAL n 4 100 VAL n 4 101 LYS n 4 102 THR n 4 103 ASP n 4 104 ARG n 4 105 ILE n 4 106 PHE n 4 107 TRP n 4 108 TYR n 4 109 ASN n 4 110 ARG n 4 111 GLY n 4 112 CYS n 4 113 GLU n 4 114 LYS n 4 115 THR n 4 116 VAL n 4 117 SER n 4 118 PHE n 4 119 LEU n 4 120 CYS n 4 121 LYS n 4 122 PHE n 4 123 TYR n 4 124 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? 'Malayan pit viper' 'Calloselasma rhodostoma' 8717 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? 'Malayan pit viper' 'Calloselasma rhodostoma' 8717 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? 'Malayan pit viper' 'Calloselasma rhodostoma' 8717 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? 'Malayan pit viper' 'Calloselasma rhodostoma' 8717 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RHCA_AGKRH P81397 1 ;DCPDGWSSTKSYCYRPFKEKKTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRSN LEWSDGSSISYENLYEPYMEKCFLMDHQSGLPKWHTADCEEKNVFMCKFQLPR ; 1 ? 2 UNP RHCB_AGKRH P81398 2 ;DFRCPTTWSASKLYCYKPFKEKKTWIEAERFCAKQAENGHLVSIGSAAEADFLDLVIVVNFDKQRYRAWTGLTERNLKWT NGASVSYENLYEPYIRKCFVVQPWEGKSKWYKADCEEKNAFLCKFPKPH ; 1 ? 3 PDB 3GPR 3GPR 3 ;FNCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLVSIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQC SSEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQAKNPFVCKFSSEC ; ? ? 4 PDB 3GPR 3GPR 4 ;CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLKYTSMWLGLNNAWAACKWEWSD DAKLDYKVWLRRAYCAVMVVKTDRIFWYNRGCEKTVSFLCKFYS ; ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GPR A 1 ? 133 ? P81397 1 ? 133 ? 1001 1133 2 2 3GPR B 1 ? 129 ? P81398 1 ? 129 ? 2001 2129 3 3 3GPR C 1 ? 134 ? 3GPR 3002 ? 3135 ? 3002 3135 4 4 3GPR D 1 ? 124 ? 3GPR 4001 ? 4124 ? 4001 4124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GPR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_percent_sol 61.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '12% PEG4000, pH 8.5, VAPOR DIFFUSION, temperature 273K' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.221 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.221 # _reflns.entry_id 3GPR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.0 _reflns.d_resolution_high 3.18 _reflns.number_obs 11684 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.18 _reflns_shell.d_res_low 3.34 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GPR _refine.ls_number_reflns_obs 11635 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1698568.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.78 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.284 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 1207 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 105.8 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 48.3099 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;BULK SOLVENT MODEL USED TWIN DETAILS NUMBER OF TWIN DOMAINS : 2 TWIN DOMAIN : 1 TWIN OPERATOR : H, K, L TWIN FRACTION : 0.501 TWIN DOMAIN : 2 TWIN OPERATOR : -H-K, K, -L TWIN FRACTION : 0.499 ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GPR _refine_analyze.Luzzati_coordinate_error_obs 0.65 _refine_analyze.Luzzati_sigma_a_obs 0.92 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.85 _refine_analyze.Luzzati_sigma_a_free 1.00 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4295 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 29.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.31 _refine_ls_shell.number_reflns_R_work 1705 _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs 99.8 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 11.6 _refine_ls_shell.number_reflns_R_free 223 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file protein_rep.param _pdbx_xplor_file.topol_file protein.top _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GPR _struct.title 'Crystal structure of rhodocetin' _struct.pdbx_descriptor 'Rhodocetin subunit alpha, Rhodocetin subunit beta' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GPR _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Rhodocetin, Disulfide bond, Lectin, Secreted, TOXIN, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? THR A 31 ? THR A 1022 THR A 1031 1 ? 10 HELX_P HELX_P2 2 LEU A 46 ? ASN A 57 ? LEU A 1046 ASN A 1057 1 ? 12 HELX_P HELX_P3 3 LYS A 75 ? SER A 79 ? LYS A 1075 SER A 1079 5 ? 5 HELX_P HELX_P4 4 THR B 24 ? ALA B 36 ? THR B 2024 ALA B 2036 1 ? 13 HELX_P HELX_P5 5 SER B 46 ? VAL B 58 ? SER B 2046 VAL B 2058 1 ? 13 HELX_P HELX_P6 6 TRP C 24 ? THR C 32 ? TRP C 3025 THR C 3033 1 ? 9 HELX_P HELX_P7 7 SER C 45 ? LYS C 61 ? SER C 3046 LYS C 3062 1 ? 17 HELX_P HELX_P8 8 TRP D 22 ? HIS D 33 ? TRP D 4022 HIS D 4033 1 ? 12 HELX_P HELX_P9 9 SER D 43 ? THR D 57 ? SER D 4043 THR D 4057 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 1002 A CYS 1013 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 1030 A CYS 1127 1_555 ? ? ? ? ? ? ? 2.031 ? disulf3 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 1102 A CYS 1119 1_555 ? ? ? ? ? ? ? 2.029 ? disulf4 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 15 SG ? ? B CYS 2004 B CYS 2015 1_555 ? ? ? ? ? ? ? 2.029 ? disulf5 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 123 SG ? ? B CYS 2032 B CYS 2123 1_555 ? ? ? ? ? ? ? 2.030 ? disulf6 disulf ? ? B CYS 98 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 2098 B CYS 2115 1_555 ? ? ? ? ? ? ? 2.030 ? disulf7 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 14 SG ? ? C CYS 3004 C CYS 3015 1_555 ? ? ? ? ? ? ? 2.029 ? disulf8 disulf ? ? C CYS 31 SG ? ? ? 1_555 C CYS 128 SG ? ? C CYS 3032 C CYS 3129 1_555 ? ? ? ? ? ? ? 2.029 ? disulf9 disulf ? ? C CYS 103 SG ? ? ? 1_555 C CYS 120 SG ? ? C CYS 3104 C CYS 3121 1_555 ? ? ? ? ? ? ? 2.030 ? disulf10 disulf ? ? D CYS 1 SG ? ? ? 1_555 D CYS 12 SG ? ? D CYS 4001 D CYS 4012 1_555 ? ? ? ? ? ? ? 2.029 ? disulf11 disulf ? ? D CYS 29 SG ? ? ? 1_555 D CYS 120 SG ? ? D CYS 4029 D CYS 4120 1_555 ? ? ? ? ? ? ? 2.031 ? disulf12 disulf ? ? D CYS 95 SG ? ? ? 1_555 D CYS 112 SG ? ? D CYS 4095 D CYS 4112 1_555 ? ? ? ? ? ? ? 2.030 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 6 ? F ? 5 ? G ? 4 ? H ? 2 ? I ? 2 ? J ? 2 ? K ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel K 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 7 ? SER A 8 ? SER A 1007 SER A 1008 A 2 TYR A 12 ? LYS A 21 ? TYR A 1012 LYS A 1021 A 3 ASN A 123 ? GLN A 130 ? ASN A 1123 GLN A 1130 A 4 HIS A 38 ? LEU A 39 ? HIS A 1038 LEU A 1039 B 1 LEU A 81 ? TRP A 83 ? LEU A 1081 TRP A 1083 B 2 LEU B 72 ? GLU B 74 ? LEU B 2072 GLU B 2074 C 1 TYR A 91 ? GLU A 92 ? TYR A 1091 GLU A 1092 C 2 GLU C 99 ? SER C 100 ? GLU C 3100 SER C 3101 D 1 LEU A 104 ? ASP A 106 ? LEU A 1104 ASP A 1106 D 2 LYS A 113 ? HIS A 115 ? LYS A 1113 HIS A 1115 E 1 SER B 9 ? ALA B 10 ? SER B 2009 ALA B 2010 E 2 CYS B 15 ? LYS B 23 ? CYS B 2015 LYS B 2023 E 3 ASN B 119 ? LYS B 124 ? ASN B 2119 LYS B 2124 E 4 ALA B 68 ? TRP B 69 ? ALA B 2068 TRP B 2069 E 5 CYS B 98 ? PRO B 103 ? CYS B 2098 PRO B 2103 E 6 SER B 108 ? LYS B 109 ? SER B 2108 LYS B 2109 F 1 HIS B 40 ? LEU B 41 ? HIS B 2040 LEU B 2041 F 2 ASN B 119 ? LYS B 124 ? ASN B 2119 LYS B 2124 F 3 ALA B 68 ? TRP B 69 ? ALA B 2068 TRP B 2069 F 4 CYS B 98 ? PRO B 103 ? CYS B 2098 PRO B 2103 F 5 LYS B 112 ? ALA B 113 ? LYS B 2112 ALA B 2113 G 1 SER C 8 ? ALA C 9 ? SER C 3009 ALA C 3010 G 2 CYS C 14 ? ALA C 17 ? CYS C 3015 ALA C 3018 G 3 VAL C 127 ? PHE C 130 ? VAL C 3128 PHE C 3131 G 4 HIS C 39 ? LEU C 40 ? HIS C 3040 LEU C 3041 H 1 GLU C 83 ? TRP C 84 ? GLU C 3084 TRP C 3085 H 2 LEU D 67 ? ASN D 68 ? LEU D 4067 ASN D 4068 I 1 CYS C 103 ? GLN C 104 ? CYS C 3104 GLN C 3105 I 2 TYR C 117 ? SER C 118 ? TYR C 3118 SER C 3119 J 1 TYR D 11 ? THR D 21 ? TYR D 4011 THR D 4021 J 2 THR D 115 ? TYR D 123 ? THR D 4115 TYR D 4123 K 1 CYS D 95 ? ALA D 96 ? CYS D 4095 ALA D 4096 K 2 ASN D 109 ? ARG D 110 ? ASN D 4109 ARG D 4110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 7 ? N SER A 1007 O TYR A 14 ? O TYR A 1014 A 2 3 N LYS A 21 ? N LYS A 1021 O ASN A 123 ? O ASN A 1123 A 3 4 O LYS A 128 ? O LYS A 1128 N HIS A 38 ? N HIS A 1038 B 1 2 N GLU A 82 ? N GLU A 1082 O THR B 73 ? O THR B 2073 C 1 2 N GLU A 92 ? N GLU A 1092 O GLU C 99 ? O GLU C 3100 D 1 2 N ASP A 106 ? N ASP A 1106 O LYS A 113 ? O LYS A 1113 E 1 2 N SER B 9 ? N SER B 2009 O TYR B 16 ? O TYR B 2016 E 2 3 N LYS B 23 ? N LYS B 2023 O ASN B 119 ? O ASN B 2119 E 3 4 O ALA B 120 ? O ALA B 2120 N TRP B 69 ? N TRP B 2069 E 4 5 N ALA B 68 ? N ALA B 2068 O VAL B 101 ? O VAL B 2101 E 5 6 N GLN B 102 ? N GLN B 2102 O LYS B 109 ? O LYS B 2109 F 1 2 N HIS B 40 ? N HIS B 2040 O LYS B 124 ? O LYS B 2124 F 2 3 O ALA B 120 ? O ALA B 2120 N TRP B 69 ? N TRP B 2069 F 3 4 N ALA B 68 ? N ALA B 2068 O VAL B 101 ? O VAL B 2101 F 4 5 N CYS B 98 ? N CYS B 2098 O ALA B 113 ? O ALA B 2113 G 1 2 N SER C 8 ? N SER C 3009 O TYR C 15 ? O TYR C 3016 G 2 3 N CYS C 14 ? N CYS C 3015 O PHE C 130 ? O PHE C 3131 G 3 4 O LYS C 129 ? O LYS C 3130 N HIS C 39 ? N HIS C 3040 H 1 2 N GLU C 83 ? N GLU C 3084 O ASN D 68 ? O ASN D 4068 I 1 2 N CYS C 103 ? N CYS C 3104 O SER C 118 ? O SER C 3119 J 1 2 N LYS D 20 ? N LYS D 4020 O VAL D 116 ? O VAL D 4116 K 1 2 N CYS D 95 ? N CYS D 4095 O ARG D 110 ? O ARG D 4110 # _database_PDB_matrix.entry_id 3GPR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GPR _atom_sites.fract_transf_matrix[1][1] 0.011969 _atom_sites.fract_transf_matrix[1][2] 0.006911 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005100 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1001 1001 ASP ASP A . n A 1 2 CYS 2 1002 1002 CYS CYS A . n A 1 3 PRO 3 1003 1003 PRO PRO A . n A 1 4 ASP 4 1004 1004 ASP ASP A . n A 1 5 GLY 5 1005 1005 GLY GLY A . n A 1 6 TRP 6 1006 1006 TRP TRP A . n A 1 7 SER 7 1007 1007 SER SER A . n A 1 8 SER 8 1008 1008 SER SER A . n A 1 9 THR 9 1009 1009 THR THR A . n A 1 10 LYS 10 1010 1010 LYS LYS A . n A 1 11 SER 11 1011 1011 SER SER A . n A 1 12 TYR 12 1012 1012 TYR TYR A . n A 1 13 CYS 13 1013 1013 CYS CYS A . n A 1 14 TYR 14 1014 1014 TYR TYR A . n A 1 15 ARG 15 1015 1015 ARG ARG A . n A 1 16 PRO 16 1016 1016 PRO PRO A . n A 1 17 PHE 17 1017 1017 PHE PHE A . n A 1 18 LYS 18 1018 1018 LYS LYS A . n A 1 19 GLU 19 1019 1019 GLU GLU A . n A 1 20 LYS 20 1020 1020 LYS LYS A . n A 1 21 LYS 21 1021 1021 LYS LYS A . n A 1 22 THR 22 1022 1022 THR THR A . n A 1 23 TRP 23 1023 1023 TRP TRP A . n A 1 24 GLU 24 1024 1024 GLU GLU A . n A 1 25 GLU 25 1025 1025 GLU GLU A . n A 1 26 ALA 26 1026 1026 ALA ALA A . n A 1 27 GLU 27 1027 1027 GLU GLU A . n A 1 28 ARG 28 1028 1028 ARG ARG A . n A 1 29 PHE 29 1029 1029 PHE PHE A . n A 1 30 CYS 30 1030 1030 CYS CYS A . n A 1 31 THR 31 1031 1031 THR THR A . n A 1 32 GLU 32 1032 1032 GLU GLU A . n A 1 33 GLN 33 1033 1033 GLN GLN A . n A 1 34 GLU 34 1034 1034 GLU GLU A . n A 1 35 LYS 35 1035 1035 LYS LYS A . n A 1 36 GLU 36 1036 1036 GLU GLU A . n A 1 37 ALA 37 1037 1037 ALA ALA A . n A 1 38 HIS 38 1038 1038 HIS HIS A . n A 1 39 LEU 39 1039 1039 LEU LEU A . n A 1 40 VAL 40 1040 1040 VAL VAL A . n A 1 41 SER 41 1041 1041 SER SER A . n A 1 42 MET 42 1042 1042 MET MET A . n A 1 43 GLU 43 1043 1043 GLU GLU A . n A 1 44 ASN 44 1044 1044 ASN ASN A . n A 1 45 ARG 45 1045 1045 ARG ARG A . n A 1 46 LEU 46 1046 1046 LEU LEU A . n A 1 47 GLU 47 1047 1047 GLU GLU A . n A 1 48 ALA 48 1048 1048 ALA ALA A . n A 1 49 VAL 49 1049 1049 VAL VAL A . n A 1 50 PHE 50 1050 1050 PHE PHE A . n A 1 51 VAL 51 1051 1051 VAL VAL A . n A 1 52 ASP 52 1052 1052 ASP ASP A . n A 1 53 MET 53 1053 1053 MET MET A . n A 1 54 VAL 54 1054 1054 VAL VAL A . n A 1 55 MET 55 1055 1055 MET MET A . n A 1 56 GLU 56 1056 1056 GLU GLU A . n A 1 57 ASN 57 1057 1057 ASN ASN A . n A 1 58 ASN 58 1058 1058 ASN ASN A . n A 1 59 PHE 59 1059 1059 PHE PHE A . n A 1 60 GLU 60 1060 1060 GLU GLU A . n A 1 61 ASN 61 1061 1061 ASN ASN A . n A 1 62 LYS 62 1062 1062 LYS LYS A . n A 1 63 ILE 63 1063 1063 ILE ILE A . n A 1 64 TYR 64 1064 1064 TYR TYR A . n A 1 65 ARG 65 1065 1065 ARG ARG A . n A 1 66 SER 66 1066 1066 SER SER A . n A 1 67 TRP 67 1067 1067 TRP TRP A . n A 1 68 ILE 68 1068 1068 ILE ILE A . n A 1 69 GLY 69 1069 1069 GLY GLY A . n A 1 70 LEU 70 1070 1070 LEU LEU A . n A 1 71 LYS 71 1071 1071 LYS LYS A . n A 1 72 ILE 72 1072 1072 ILE ILE A . n A 1 73 GLU 73 1073 1073 GLU GLU A . n A 1 74 ASN 74 1074 1074 ASN ASN A . n A 1 75 LYS 75 1075 1075 LYS LYS A . n A 1 76 GLY 76 1076 1076 GLY GLY A . n A 1 77 GLN 77 1077 1077 GLN GLN A . n A 1 78 ARG 78 1078 1078 ARG ARG A . n A 1 79 SER 79 1079 1079 SER SER A . n A 1 80 ASN 80 1080 1080 ASN ASN A . n A 1 81 LEU 81 1081 1081 LEU LEU A . n A 1 82 GLU 82 1082 1082 GLU GLU A . n A 1 83 TRP 83 1083 1083 TRP TRP A . n A 1 84 SER 84 1084 1084 SER SER A . n A 1 85 ASP 85 1085 1085 ASP ASP A . n A 1 86 GLY 86 1086 1086 GLY GLY A . n A 1 87 SER 87 1087 1087 SER SER A . n A 1 88 SER 88 1088 1088 SER SER A . n A 1 89 ILE 89 1089 1089 ILE ILE A . n A 1 90 SER 90 1090 1090 SER SER A . n A 1 91 TYR 91 1091 1091 TYR TYR A . n A 1 92 GLU 92 1092 1092 GLU GLU A . n A 1 93 ASN 93 1093 1093 ASN ASN A . n A 1 94 LEU 94 1094 1094 LEU LEU A . n A 1 95 TYR 95 1095 1095 TYR TYR A . n A 1 96 GLU 96 1096 1096 GLU GLU A . n A 1 97 PRO 97 1097 1097 PRO PRO A . n A 1 98 TYR 98 1098 1098 TYR TYR A . n A 1 99 MET 99 1099 1099 MET MET A . n A 1 100 GLU 100 1100 1100 GLU GLU A . n A 1 101 LYS 101 1101 1101 LYS LYS A . n A 1 102 CYS 102 1102 1102 CYS CYS A . n A 1 103 PHE 103 1103 1103 PHE PHE A . n A 1 104 LEU 104 1104 1104 LEU LEU A . n A 1 105 MET 105 1105 1105 MET MET A . n A 1 106 ASP 106 1106 1106 ASP ASP A . n A 1 107 HIS 107 1107 1107 HIS HIS A . n A 1 108 GLN 108 1108 1108 GLN GLN A . n A 1 109 SER 109 1109 1109 SER SER A . n A 1 110 GLY 110 1110 1110 GLY GLY A . n A 1 111 LEU 111 1111 1111 LEU LEU A . n A 1 112 PRO 112 1112 1112 PRO PRO A . n A 1 113 LYS 113 1113 1113 LYS LYS A . n A 1 114 TRP 114 1114 1114 TRP TRP A . n A 1 115 HIS 115 1115 1115 HIS HIS A . n A 1 116 THR 116 1116 1116 THR THR A . n A 1 117 ALA 117 1117 1117 ALA ALA A . n A 1 118 ASP 118 1118 1118 ASP ASP A . n A 1 119 CYS 119 1119 1119 CYS CYS A . n A 1 120 GLU 120 1120 1120 GLU GLU A . n A 1 121 GLU 121 1121 1121 GLU GLU A . n A 1 122 LYS 122 1122 1122 LYS LYS A . n A 1 123 ASN 123 1123 1123 ASN ASN A . n A 1 124 VAL 124 1124 1124 VAL VAL A . n A 1 125 PHE 125 1125 1125 PHE PHE A . n A 1 126 MET 126 1126 1126 MET MET A . n A 1 127 CYS 127 1127 1127 CYS CYS A . n A 1 128 LYS 128 1128 1128 LYS LYS A . n A 1 129 PHE 129 1129 1129 PHE PHE A . n A 1 130 GLN 130 1130 1130 GLN GLN A . n A 1 131 LEU 131 1131 1131 LEU LEU A . n A 1 132 PRO 132 1132 1132 PRO PRO A . n A 1 133 ARG 133 1133 ? ? ? A . n B 2 1 ASP 1 2001 ? ? ? B . n B 2 2 PHE 2 2002 2002 PHE PHE B . n B 2 3 ARG 3 2003 2003 ARG ARG B . n B 2 4 CYS 4 2004 2004 CYS CYS B . n B 2 5 PRO 5 2005 2005 PRO PRO B . n B 2 6 THR 6 2006 2006 THR THR B . n B 2 7 THR 7 2007 2007 THR THR B . n B 2 8 TRP 8 2008 2008 TRP TRP B . n B 2 9 SER 9 2009 2009 SER SER B . n B 2 10 ALA 10 2010 2010 ALA ALA B . n B 2 11 SER 11 2011 2011 SER SER B . n B 2 12 LYS 12 2012 2012 LYS LYS B . n B 2 13 LEU 13 2013 2013 LEU LEU B . n B 2 14 TYR 14 2014 2014 TYR TYR B . n B 2 15 CYS 15 2015 2015 CYS CYS B . n B 2 16 TYR 16 2016 2016 TYR TYR B . n B 2 17 LYS 17 2017 2017 LYS LYS B . n B 2 18 PRO 18 2018 2018 PRO PRO B . n B 2 19 PHE 19 2019 2019 PHE PHE B . n B 2 20 LYS 20 2020 2020 LYS LYS B . n B 2 21 GLU 21 2021 2021 GLU GLU B . n B 2 22 LYS 22 2022 2022 LYS LYS B . n B 2 23 LYS 23 2023 2023 LYS LYS B . n B 2 24 THR 24 2024 2024 THR THR B . n B 2 25 TRP 25 2025 2025 TRP TRP B . n B 2 26 ILE 26 2026 2026 ILE ILE B . n B 2 27 GLU 27 2027 2027 GLU GLU B . n B 2 28 ALA 28 2028 2028 ALA ALA B . n B 2 29 GLU 29 2029 2029 GLU GLU B . n B 2 30 ARG 30 2030 2030 ARG ARG B . n B 2 31 PHE 31 2031 2031 PHE PHE B . n B 2 32 CYS 32 2032 2032 CYS CYS B . n B 2 33 ALA 33 2033 2033 ALA ALA B . n B 2 34 LYS 34 2034 2034 LYS LYS B . n B 2 35 GLN 35 2035 2035 GLN GLN B . n B 2 36 ALA 36 2036 2036 ALA ALA B . n B 2 37 GLU 37 2037 2037 GLU GLU B . n B 2 38 ASN 38 2038 2038 ASN ASN B . n B 2 39 GLY 39 2039 2039 GLY GLY B . n B 2 40 HIS 40 2040 2040 HIS HIS B . n B 2 41 LEU 41 2041 2041 LEU LEU B . n B 2 42 VAL 42 2042 2042 VAL VAL B . n B 2 43 SER 43 2043 2043 SER SER B . n B 2 44 ILE 44 2044 2044 ILE ILE B . n B 2 45 GLY 45 2045 2045 GLY GLY B . n B 2 46 SER 46 2046 2046 SER SER B . n B 2 47 ALA 47 2047 2047 ALA ALA B . n B 2 48 ALA 48 2048 2048 ALA ALA B . n B 2 49 GLU 49 2049 2049 GLU GLU B . n B 2 50 ALA 50 2050 2050 ALA ALA B . n B 2 51 ASP 51 2051 2051 ASP ASP B . n B 2 52 PHE 52 2052 2052 PHE PHE B . n B 2 53 LEU 53 2053 2053 LEU LEU B . n B 2 54 ASP 54 2054 2054 ASP ASP B . n B 2 55 LEU 55 2055 2055 LEU LEU B . n B 2 56 VAL 56 2056 2056 VAL VAL B . n B 2 57 ILE 57 2057 2057 ILE ILE B . n B 2 58 VAL 58 2058 2058 VAL VAL B . n B 2 59 VAL 59 2059 2059 VAL VAL B . n B 2 60 ASN 60 2060 2060 ASN ASN B . n B 2 61 PHE 61 2061 2061 PHE PHE B . n B 2 62 ASP 62 2062 2062 ASP ASP B . n B 2 63 LYS 63 2063 2063 LYS LYS B . n B 2 64 GLN 64 2064 2064 GLN GLN B . n B 2 65 ARG 65 2065 2065 ARG ARG B . n B 2 66 TYR 66 2066 2066 TYR TYR B . n B 2 67 ARG 67 2067 2067 ARG ARG B . n B 2 68 ALA 68 2068 2068 ALA ALA B . n B 2 69 TRP 69 2069 2069 TRP TRP B . n B 2 70 THR 70 2070 2070 THR THR B . n B 2 71 GLY 71 2071 2071 GLY GLY B . n B 2 72 LEU 72 2072 2072 LEU LEU B . n B 2 73 THR 73 2073 2073 THR THR B . n B 2 74 GLU 74 2074 2074 GLU GLU B . n B 2 75 ARG 75 2075 2075 ARG ARG B . n B 2 76 ASN 76 2076 2076 ASN ASN B . n B 2 77 LEU 77 2077 2077 LEU LEU B . n B 2 78 LYS 78 2078 2078 LYS LYS B . n B 2 79 TRP 79 2079 2079 TRP TRP B . n B 2 80 THR 80 2080 2080 THR THR B . n B 2 81 ASN 81 2081 2081 ASN ASN B . n B 2 82 GLY 82 2082 2082 GLY GLY B . n B 2 83 ALA 83 2083 2083 ALA ALA B . n B 2 84 SER 84 2084 2084 SER SER B . n B 2 85 VAL 85 2085 2085 VAL VAL B . n B 2 86 SER 86 2086 2086 SER SER B . n B 2 87 TYR 87 2087 2087 TYR TYR B . n B 2 88 GLU 88 2088 2088 GLU GLU B . n B 2 89 ASN 89 2089 2089 ASN ASN B . n B 2 90 LEU 90 2090 2090 LEU LEU B . n B 2 91 TYR 91 2091 2091 TYR TYR B . n B 2 92 GLU 92 2092 2092 GLU GLU B . n B 2 93 PRO 93 2093 2093 PRO PRO B . n B 2 94 TYR 94 2094 2094 TYR TYR B . n B 2 95 ILE 95 2095 2095 ILE ILE B . n B 2 96 ARG 96 2096 2096 ARG ARG B . n B 2 97 LYS 97 2097 2097 LYS LYS B . n B 2 98 CYS 98 2098 2098 CYS CYS B . n B 2 99 PHE 99 2099 2099 PHE PHE B . n B 2 100 VAL 100 2100 2100 VAL VAL B . n B 2 101 VAL 101 2101 2101 VAL VAL B . n B 2 102 GLN 102 2102 2102 GLN GLN B . n B 2 103 PRO 103 2103 2103 PRO PRO B . n B 2 104 TRP 104 2104 2104 TRP TRP B . n B 2 105 GLU 105 2105 2105 GLU GLU B . n B 2 106 GLY 106 2106 2106 GLY GLY B . n B 2 107 LYS 107 2107 2107 LYS LYS B . n B 2 108 SER 108 2108 2108 SER SER B . n B 2 109 LYS 109 2109 2109 LYS LYS B . n B 2 110 TRP 110 2110 2110 TRP TRP B . n B 2 111 TYR 111 2111 2111 TYR TYR B . n B 2 112 LYS 112 2112 2112 LYS LYS B . n B 2 113 ALA 113 2113 2113 ALA ALA B . n B 2 114 ASP 114 2114 2114 ASP ASP B . n B 2 115 CYS 115 2115 2115 CYS CYS B . n B 2 116 GLU 116 2116 2116 GLU GLU B . n B 2 117 GLU 117 2117 2117 GLU GLU B . n B 2 118 LYS 118 2118 2118 LYS LYS B . n B 2 119 ASN 119 2119 2119 ASN ASN B . n B 2 120 ALA 120 2120 2120 ALA ALA B . n B 2 121 PHE 121 2121 2121 PHE PHE B . n B 2 122 LEU 122 2122 2122 LEU LEU B . n B 2 123 CYS 123 2123 2123 CYS CYS B . n B 2 124 LYS 124 2124 2124 LYS LYS B . n B 2 125 PHE 125 2125 2125 PHE PHE B . n B 2 126 PRO 126 2126 2126 PRO PRO B . n B 2 127 LYS 127 2127 2127 LYS LYS B . n B 2 128 PRO 128 2128 2128 PRO PRO B . n B 2 129 HIS 129 2129 ? ? ? B . n C 3 1 PHE 1 3002 3002 PHE PHE C . n C 3 2 ASN 2 3003 3003 ASN ASN C . n C 3 3 CYS 3 3004 3004 CYS CYS C . n C 3 4 LEU 4 3005 3005 LEU LEU C . n C 3 5 PRO 5 3006 3006 PRO PRO C . n C 3 6 GLY 6 3007 3007 GLY GLY C . n C 3 7 TRP 7 3008 3008 TRP TRP C . n C 3 8 SER 8 3009 3009 SER SER C . n C 3 9 ALA 9 3010 3010 ALA ALA C . n C 3 10 TYR 10 3011 3011 TYR TYR C . n C 3 11 ASP 11 3012 3012 ASP ASP C . n C 3 12 GLN 12 3013 3013 GLN GLN C . n C 3 13 HIS 13 3014 3014 HIS HIS C . n C 3 14 CYS 14 3015 3015 CYS CYS C . n C 3 15 TYR 15 3016 3016 TYR TYR C . n C 3 16 GLN 16 3017 3017 GLN GLN C . n C 3 17 ALA 17 3018 3018 ALA ALA C . n C 3 18 PHE 18 3019 3019 PHE PHE C . n C 3 19 ASN 19 3020 3020 ASN ASN C . n C 3 20 GLU 20 3021 3021 GLU GLU C . n C 3 21 PRO 21 3022 3022 PRO PRO C . n C 3 22 LYS 22 3023 3023 LYS LYS C . n C 3 23 THR 23 3024 3024 THR THR C . n C 3 24 TRP 24 3025 3025 TRP TRP C . n C 3 25 ASP 25 3026 3026 ASP ASP C . n C 3 26 GLU 26 3027 3027 GLU GLU C . n C 3 27 ALA 27 3028 3028 ALA ALA C . n C 3 28 GLU 28 3029 3029 GLU GLU C . n C 3 29 ARG 29 3030 3030 ARG ARG C . n C 3 30 PHE 30 3031 3031 PHE PHE C . n C 3 31 CYS 31 3032 3032 CYS CYS C . n C 3 32 THR 32 3033 3033 THR THR C . n C 3 33 GLU 33 3034 3034 GLU GLU C . n C 3 34 GLN 34 3035 3035 GLN GLN C . n C 3 35 ALA 35 3036 3036 ALA ALA C . n C 3 36 LYS 36 3037 3037 LYS LYS C . n C 3 37 ARG 37 3038 3038 ARG ARG C . n C 3 38 GLY 38 3039 3039 GLY GLY C . n C 3 39 HIS 39 3040 3040 HIS HIS C . n C 3 40 LEU 40 3041 3041 LEU LEU C . n C 3 41 VAL 41 3042 3042 VAL VAL C . n C 3 42 SER 42 3043 3043 SER SER C . n C 3 43 ILE 43 3044 3044 ILE ILE C . n C 3 44 GLY 44 3045 3045 GLY GLY C . n C 3 45 SER 45 3046 3046 SER SER C . n C 3 46 ASP 46 3047 3047 ASP ASP C . n C 3 47 GLY 47 3048 3048 GLY GLY C . n C 3 48 GLU 48 3049 3049 GLU GLU C . n C 3 49 ALA 49 3050 3050 ALA ALA C . n C 3 50 ASP 50 3051 3051 ASP ASP C . n C 3 51 PHE 51 3052 3052 PHE PHE C . n C 3 52 VAL 52 3053 3053 VAL VAL C . n C 3 53 ALA 53 3054 3054 ALA ALA C . n C 3 54 GLN 54 3055 3055 GLN GLN C . n C 3 55 LEU 55 3056 3056 LEU LEU C . n C 3 56 VAL 56 3057 3057 VAL VAL C . n C 3 57 THR 57 3058 3058 THR THR C . n C 3 58 ASN 58 3059 3059 ASN ASN C . n C 3 59 ASN 59 3060 3060 ASN ASN C . n C 3 60 ILE 60 3061 3061 ILE ILE C . n C 3 61 LYS 61 3062 3062 LYS LYS C . n C 3 62 ARG 62 3063 3063 ARG ARG C . n C 3 63 PRO 63 3064 3064 PRO PRO C . n C 3 64 GLU 64 3065 3065 GLU GLU C . n C 3 65 LEU 65 3066 3066 LEU LEU C . n C 3 66 TYR 66 3067 3067 TYR TYR C . n C 3 67 VAL 67 3068 3068 VAL VAL C . n C 3 68 TRP 68 3069 3069 TRP TRP C . n C 3 69 ILE 69 3070 3070 ILE ILE C . n C 3 70 GLY 70 3071 3071 GLY GLY C . n C 3 71 LEU 71 3072 3072 LEU LEU C . n C 3 72 ARG 72 3073 3073 ARG ARG C . n C 3 73 ASP 73 3074 3074 ASP ASP C . n C 3 74 ARG 74 3075 3075 ARG ARG C . n C 3 75 ARG 75 3076 3076 ARG ARG C . n C 3 76 LYS 76 3077 3077 LYS LYS C . n C 3 77 GLU 77 3078 3078 GLU GLU C . n C 3 78 GLN 78 3079 3079 GLN GLN C . n C 3 79 GLN 79 3080 3080 GLN GLN C . n C 3 80 CYS 80 3081 3081 CYS CYS C . n C 3 81 SER 81 3082 3082 SER SER C . n C 3 82 SER 82 3083 3083 SER SER C . n C 3 83 GLU 83 3084 3084 GLU GLU C . n C 3 84 TRP 84 3085 3085 TRP TRP C . n C 3 85 SER 85 3086 3086 SER SER C . n C 3 86 MET 86 3087 3087 MET MET C . n C 3 87 SER 87 3088 3088 SER SER C . n C 3 88 ALA 88 3089 3089 ALA ALA C . n C 3 89 SER 89 3090 3090 SER SER C . n C 3 90 ILE 90 3091 3091 ILE ILE C . n C 3 91 ILE 91 3092 3092 ILE ILE C . n C 3 92 TYR 92 3093 3093 TYR TYR C . n C 3 93 VAL 93 3094 3094 VAL VAL C . n C 3 94 ASN 94 3095 3095 ASN ASN C . n C 3 95 TRP 95 3096 3096 TRP TRP C . n C 3 96 ASN 96 3097 3097 ASN ASN C . n C 3 97 THR 97 3098 3098 THR THR C . n C 3 98 GLY 98 3099 3099 GLY GLY C . n C 3 99 GLU 99 3100 3100 GLU GLU C . n C 3 100 SER 100 3101 3101 SER SER C . n C 3 101 GLN 101 3102 3102 GLN GLN C . n C 3 102 MET 102 3103 3103 MET MET C . n C 3 103 CYS 103 3104 3104 CYS CYS C . n C 3 104 GLN 104 3105 3105 GLN GLN C . n C 3 105 GLY 105 3106 3106 GLY GLY C . n C 3 106 LEU 106 3107 3107 LEU LEU C . n C 3 107 ALA 107 3108 3108 ALA ALA C . n C 3 108 ARG 108 3109 3109 ARG ARG C . n C 3 109 TRP 109 3110 3110 TRP TRP C . n C 3 110 THR 110 3111 3111 THR THR C . n C 3 111 GLY 111 3112 3112 GLY GLY C . n C 3 112 PHE 112 3113 3113 PHE PHE C . n C 3 113 ARG 113 3114 3114 ARG ARG C . n C 3 114 LYS 114 3115 3115 LYS LYS C . n C 3 115 TRP 115 3116 3116 TRP TRP C . n C 3 116 ASP 116 3117 3117 ASP ASP C . n C 3 117 TYR 117 3118 3118 TYR TYR C . n C 3 118 SER 118 3119 3119 SER SER C . n C 3 119 ASP 119 3120 3120 ASP ASP C . n C 3 120 CYS 120 3121 3121 CYS CYS C . n C 3 121 GLN 121 3122 3122 GLN GLN C . n C 3 122 ALA 122 3123 3123 ALA ALA C . n C 3 123 LYS 123 3124 3124 LYS LYS C . n C 3 124 ASN 124 3125 3125 ASN ASN C . n C 3 125 PRO 125 3126 3126 PRO PRO C . n C 3 126 PHE 126 3127 3127 PHE PHE C . n C 3 127 VAL 127 3128 3128 VAL VAL C . n C 3 128 CYS 128 3129 3129 CYS CYS C . n C 3 129 LYS 129 3130 3130 LYS LYS C . n C 3 130 PHE 130 3131 3131 PHE PHE C . n C 3 131 SER 131 3132 3132 SER SER C . n C 3 132 SER 132 3133 3133 SER SER C . n C 3 133 GLU 133 3134 3134 GLU GLU C . n C 3 134 CYS 134 3135 3135 CYS CYS C . n D 4 1 CYS 1 4001 4001 CYS CYS D . n D 4 2 PRO 2 4002 4002 PRO PRO D . n D 4 3 LEU 3 4003 4003 LEU LEU D . n D 4 4 HIS 4 4004 4004 HIS HIS D . n D 4 5 TRP 5 4005 4005 TRP TRP D . n D 4 6 SER 6 4006 4006 SER SER D . n D 4 7 SER 7 4007 4007 SER SER D . n D 4 8 TYR 8 4008 4008 TYR TYR D . n D 4 9 ASN 9 4009 4009 ASN ASN D . n D 4 10 GLY 10 4010 4010 GLY GLY D . n D 4 11 TYR 11 4011 4011 TYR TYR D . n D 4 12 CYS 12 4012 4012 CYS CYS D . n D 4 13 TYR 13 4013 4013 TYR TYR D . n D 4 14 ARG 14 4014 4014 ARG ARG D . n D 4 15 VAL 15 4015 4015 VAL VAL D . n D 4 16 PHE 16 4016 4016 PHE PHE D . n D 4 17 SER 17 4017 4017 SER SER D . n D 4 18 GLU 18 4018 4018 GLU GLU D . n D 4 19 LEU 19 4019 4019 LEU LEU D . n D 4 20 LYS 20 4020 4020 LYS LYS D . n D 4 21 THR 21 4021 4021 THR THR D . n D 4 22 TRP 22 4022 4022 TRP TRP D . n D 4 23 GLU 23 4023 4023 GLU GLU D . n D 4 24 ASP 24 4024 4024 ASP ASP D . n D 4 25 ALA 25 4025 4025 ALA ALA D . n D 4 26 GLU 26 4026 4026 GLU GLU D . n D 4 27 SER 27 4027 4027 SER SER D . n D 4 28 PHE 28 4028 4028 PHE PHE D . n D 4 29 CYS 29 4029 4029 CYS CYS D . n D 4 30 TYR 30 4030 4030 TYR TYR D . n D 4 31 ALA 31 4031 4031 ALA ALA D . n D 4 32 GLN 32 4032 4032 GLN GLN D . n D 4 33 HIS 33 4033 4033 HIS HIS D . n D 4 34 LYS 34 4034 4034 LYS LYS D . n D 4 35 GLY 35 4035 4035 GLY GLY D . n D 4 36 SER 36 4036 4036 SER SER D . n D 4 37 ARG 37 4037 4037 ARG ARG D . n D 4 38 LEU 38 4038 4038 LEU LEU D . n D 4 39 ALA 39 4039 4039 ALA ALA D . n D 4 40 SER 40 4040 4040 SER SER D . n D 4 41 ILE 41 4041 4041 ILE ILE D . n D 4 42 HIS 42 4042 4042 HIS HIS D . n D 4 43 SER 43 4043 4043 SER SER D . n D 4 44 ARG 44 4044 4044 ARG ARG D . n D 4 45 GLU 45 4045 4045 GLU GLU D . n D 4 46 GLU 46 4046 4046 GLU GLU D . n D 4 47 GLU 47 4047 4047 GLU GLU D . n D 4 48 ALA 48 4048 4048 ALA ALA D . n D 4 49 PHE 49 4049 4049 PHE PHE D . n D 4 50 VAL 50 4050 4050 VAL VAL D . n D 4 51 GLY 51 4051 4051 GLY GLY D . n D 4 52 LYS 52 4052 4052 LYS LYS D . n D 4 53 LEU 53 4053 4053 LEU LEU D . n D 4 54 ALA 54 4054 4054 ALA ALA D . n D 4 55 SER 55 4055 4055 SER SER D . n D 4 56 GLN 56 4056 4056 GLN GLN D . n D 4 57 THR 57 4057 4057 THR THR D . n D 4 58 LEU 58 4058 4058 LEU LEU D . n D 4 59 LYS 59 4059 4059 LYS LYS D . n D 4 60 TYR 60 4060 4060 TYR TYR D . n D 4 61 THR 61 4061 4061 THR THR D . n D 4 62 SER 62 4062 4062 SER SER D . n D 4 63 MET 63 4063 4063 MET MET D . n D 4 64 TRP 64 4064 4064 TRP TRP D . n D 4 65 LEU 65 4065 4065 LEU LEU D . n D 4 66 GLY 66 4066 4066 GLY GLY D . n D 4 67 LEU 67 4067 4067 LEU LEU D . n D 4 68 ASN 68 4068 4068 ASN ASN D . n D 4 69 ASN 69 4069 4069 ASN ASN D . n D 4 70 ALA 70 4070 4070 ALA ALA D . n D 4 71 TRP 71 4071 4071 TRP TRP D . n D 4 72 ALA 72 4072 4072 ALA ALA D . n D 4 73 ALA 73 4073 4073 ALA ALA D . n D 4 74 CYS 74 4074 4074 CYS CYS D . n D 4 75 LYS 75 4075 4075 LYS LYS D . n D 4 76 TRP 76 4076 4076 TRP TRP D . n D 4 77 GLU 77 4077 4077 GLU GLU D . n D 4 78 TRP 78 4078 4078 TRP TRP D . n D 4 79 SER 79 4079 4079 SER SER D . n D 4 80 ASP 80 4080 4080 ASP ASP D . n D 4 81 ASP 81 4081 4081 ASP ASP D . n D 4 82 ALA 82 4082 4082 ALA ALA D . n D 4 83 LYS 83 4083 4083 LYS LYS D . n D 4 84 LEU 84 4084 4084 LEU LEU D . n D 4 85 ASP 85 4085 4085 ASP ASP D . n D 4 86 TYR 86 4086 4086 TYR TYR D . n D 4 87 LYS 87 4087 4087 LYS LYS D . n D 4 88 VAL 88 4088 4088 VAL VAL D . n D 4 89 TRP 89 4089 4089 TRP TRP D . n D 4 90 LEU 90 4090 4090 LEU LEU D . n D 4 91 ARG 91 4091 4091 ARG ARG D . n D 4 92 ARG 92 4092 4092 ARG ARG D . n D 4 93 ALA 93 4093 4093 ALA ALA D . n D 4 94 TYR 94 4094 4094 TYR TYR D . n D 4 95 CYS 95 4095 4095 CYS CYS D . n D 4 96 ALA 96 4096 4096 ALA ALA D . n D 4 97 VAL 97 4097 4097 VAL VAL D . n D 4 98 MET 98 4098 4098 MET MET D . n D 4 99 VAL 99 4099 4099 VAL VAL D . n D 4 100 VAL 100 4100 4100 VAL VAL D . n D 4 101 LYS 101 4101 4101 LYS LYS D . n D 4 102 THR 102 4102 4102 THR THR D . n D 4 103 ASP 103 4103 4103 ASP ASP D . n D 4 104 ARG 104 4104 4104 ARG ARG D . n D 4 105 ILE 105 4105 4105 ILE ILE D . n D 4 106 PHE 106 4106 4106 PHE PHE D . n D 4 107 TRP 107 4107 4107 TRP TRP D . n D 4 108 TYR 108 4108 4108 TYR TYR D . n D 4 109 ASN 109 4109 4109 ASN ASN D . n D 4 110 ARG 110 4110 4110 ARG ARG D . n D 4 111 GLY 111 4111 4111 GLY GLY D . n D 4 112 CYS 112 4112 4112 CYS CYS D . n D 4 113 GLU 113 4113 4113 GLU GLU D . n D 4 114 LYS 114 4114 4114 LYS LYS D . n D 4 115 THR 115 4115 4115 THR THR D . n D 4 116 VAL 116 4116 4116 VAL VAL D . n D 4 117 SER 117 4117 4117 SER SER D . n D 4 118 PHE 118 4118 4118 PHE PHE D . n D 4 119 LEU 119 4119 4119 LEU LEU D . n D 4 120 CYS 120 4120 4120 CYS CYS D . n D 4 121 LYS 121 4121 4121 LYS LYS D . n D 4 122 PHE 122 4122 4122 PHE PHE D . n D 4 123 TYR 123 4123 4123 TYR TYR D . n D 4 124 SER 124 4124 4124 SER SER D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9120 ? 1 MORE -44 ? 1 'SSA (A^2)' 26940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 CNS refinement 1.2 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # _pdbx_entry_details.sequence_details ;THE AUTHOR STATES THAT RHODOCETIN WAS PURIFIED FROM THE CRUDE VENOM OF MALAYAN PIT VIPER (CALLOSELASMA RHODOSTOMA) WITH A NEW SO FAR UNKNOWN CHROMATOGRAPHY APPROACH AND THIS REVEALED THAT RHODOCETIN IS COMPOSED OF FOUR SUBUNITS WHICH ARE DIFFERENT. CHAINS C AND D BELONG TO RHODOCETIN AND ARE NEW. ; _pdbx_entry_details.entry_id 3GPR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 1003 ? ? -56.38 178.00 2 1 LYS A 1010 ? ? -166.32 -47.38 3 1 SER A 1011 ? ? -155.90 7.20 4 1 ARG A 1015 ? ? -167.93 104.87 5 1 GLU A 1019 ? ? -56.36 104.23 6 1 ALA A 1037 ? ? -146.63 -147.03 7 1 VAL A 1054 ? ? -63.11 3.66 8 1 ASN A 1061 ? ? 56.98 12.37 9 1 ILE A 1063 ? ? -59.43 102.73 10 1 ARG A 1065 ? ? -145.35 41.30 11 1 SER A 1066 ? ? -49.80 159.46 12 1 LYS A 1071 ? ? -158.08 85.66 13 1 ASN A 1074 ? ? -108.30 46.95 14 1 ASN A 1093 ? ? -176.88 62.57 15 1 GLU A 1100 ? ? -159.61 86.89 16 1 PHE A 1103 ? ? -52.04 176.32 17 1 GLN A 1108 ? ? -132.96 -45.00 18 1 GLU A 1120 ? ? -90.42 52.31 19 1 LYS A 1128 ? ? -177.98 145.76 20 1 THR B 2007 ? ? 44.27 26.12 21 1 SER B 2011 ? ? -106.24 -62.50 22 1 LYS B 2012 ? ? -174.13 -17.66 23 1 LEU B 2013 ? ? -144.12 -24.25 24 1 LYS B 2017 ? ? -172.04 125.36 25 1 GLU B 2021 ? ? -45.77 105.76 26 1 ASP B 2062 ? ? 61.56 -175.16 27 1 LYS B 2063 ? ? 69.78 -24.05 28 1 GLN B 2064 ? ? 64.08 73.12 29 1 ARG B 2065 ? ? -176.26 42.08 30 1 ARG B 2067 ? ? -163.84 80.47 31 1 THR B 2073 ? ? -127.83 -164.84 32 1 ARG B 2075 ? ? -69.71 -164.02 33 1 LEU B 2077 ? ? 60.55 77.90 34 1 ARG B 2096 ? ? -58.71 97.75 35 1 VAL B 2100 ? ? -137.68 -153.32 36 1 GLU B 2105 ? ? 54.44 106.78 37 1 LYS B 2107 ? ? -72.68 -160.07 38 1 CYS B 2115 ? ? -66.48 24.50 39 1 LYS B 2124 ? ? -177.44 146.52 40 1 ASN C 3003 ? ? 58.86 96.85 41 1 TYR C 3011 ? ? -122.60 -57.26 42 1 ASP C 3012 ? ? -136.08 -51.27 43 1 GLN C 3013 ? ? -144.75 -17.98 44 1 GLN C 3017 ? ? -172.64 125.45 45 1 LYS C 3023 ? ? -104.79 -164.92 46 1 THR C 3024 ? ? -79.76 -147.86 47 1 ARG C 3030 ? ? -66.12 2.11 48 1 GLU C 3034 ? ? -89.27 48.41 49 1 ALA C 3036 ? ? -56.90 -80.11 50 1 ALA C 3050 ? ? -63.74 -70.88 51 1 LYS C 3062 ? ? 79.46 -6.94 52 1 ARG C 3063 ? ? 82.52 4.05 53 1 PRO C 3064 ? ? -78.16 -141.35 54 1 ARG C 3075 ? ? -118.02 -146.86 55 1 GLU C 3078 ? ? 61.05 166.52 56 1 GLN C 3079 ? ? -79.76 37.04 57 1 CYS C 3081 ? ? 56.88 -120.87 58 1 SER C 3082 ? ? 61.16 -4.88 59 1 SER C 3083 ? ? -174.65 128.56 60 1 SER C 3088 ? ? 55.08 13.42 61 1 ILE C 3092 ? ? -142.67 -0.36 62 1 TYR C 3093 ? ? -170.76 114.12 63 1 TRP C 3110 ? ? -72.16 -77.79 64 1 TRP C 3116 ? ? -115.12 64.90 65 1 LYS C 3130 ? ? -167.35 114.53 66 1 PRO D 4002 ? ? -66.67 -166.01 67 1 HIS D 4004 ? ? 70.70 -19.76 68 1 TYR D 4008 ? ? -106.98 -61.15 69 1 ASN D 4009 ? ? -167.53 -37.66 70 1 TYR D 4030 ? ? -46.85 -19.97 71 1 GLN D 4032 ? ? -23.68 -78.22 72 1 HIS D 4033 ? ? -129.27 -166.43 73 1 SER D 4043 ? ? -175.91 141.54 74 1 TYR D 4060 ? ? -106.20 -162.76 75 1 TRP D 4064 ? ? -62.92 -171.93 76 1 ASN D 4069 ? ? -72.13 -110.50 77 1 ALA D 4070 ? ? 63.74 151.68 78 1 TRP D 4071 ? ? -70.80 -93.70 79 1 ALA D 4072 ? ? 46.63 -148.39 80 1 ALA D 4073 ? ? -177.95 115.02 81 1 LYS D 4075 ? ? 176.22 137.15 82 1 TRP D 4078 ? ? -71.00 -85.32 83 1 SER D 4079 ? ? -158.21 -57.36 84 1 TYR D 4086 ? ? -162.92 38.13 85 1 TRP D 4089 ? ? 68.44 122.61 86 1 LEU D 4090 ? ? -166.35 52.71 87 1 ARG D 4091 ? ? 57.14 115.42 88 1 ARG D 4092 ? ? -150.77 -69.50 89 1 ALA D 4093 ? ? -60.69 97.80 90 1 VAL D 4097 ? ? -142.81 -145.91 91 1 MET D 4098 ? ? -171.30 125.59 92 1 LYS D 4101 ? ? -145.34 52.99 93 1 ASP D 4103 ? ? -179.72 -141.05 94 1 ARG D 4104 ? ? -66.52 -117.06 95 1 SER D 4117 ? ? -55.66 179.68 96 1 PHE D 4118 ? ? -164.76 -163.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 1133 ? A ARG 133 2 1 Y 1 B ASP 2001 ? B ASP 1 3 1 Y 1 B HIS 2129 ? B HIS 129 # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? 'H, K, L' 0.501 2 1 1 ? '-H-K, K, -L' 0.499 #