data_3GPU # _entry.id 3GPU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GPU pdb_00003gpu 10.2210/pdb3gpu/pdb NDB PD1264 ? ? RCSB RCSB052163 ? ? WWPDB D_1000052163 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GPP . unspecified PDB 3GPX . unspecified PDB 3GPY . unspecified PDB 3GQ3 . unspecified PDB 3GQ4 . unspecified PDB 3GQ5 . unspecified # _pdbx_database_status.entry_id 3GPU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Banerjee, A.' 1 'Qi, Y.' 2 'Verdine, G.L.' 3 # _citation.id primary _citation.title 'Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.' _citation.journal_abbrev Nature _citation.journal_volume 462 _citation.page_first 762 _citation.page_last 766 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20010681 _citation.pdbx_database_id_DOI 10.1038/nature08561 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qi, Y.' 1 ? primary 'Spong, M.C.' 2 ? primary 'Nam, K.' 3 ? primary 'Banerjee, A.' 4 ? primary 'Jiralerspong, S.' 5 ? primary 'Karplus, M.' 6 ? primary 'Verdine, G.L.' 7 ? # _cell.length_a 45.218 _cell.length_b 93.294 _cell.length_c 104.972 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GPU _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3GPU _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA glycosylase' 28812.473 1 4.2.99.18 'Q166C, 220-235 deletion' ? ? 2 polymer syn ;DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3') ; 4948.217 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3') ; 4866.141 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 287 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGQHHLYVYGRQGNPCKRCGTPIEK TVVAGRGTHYCPRCQR ; ;PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGQHHLYVYGRQGNPCKRCGTPIEK TVVAGRGTHYCPRCQR ; A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DT)(DC)(DG)(DG)(DA)(DC)(DG)(DC)' AGGTAGACTCGGACGC B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DC)(DG)(DT)(DC)(DC)(8OG)(DA)(DG)(DT)(DC)(DT)(DA)(DC)(DC)' TGCGTCCGAGTCTACC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLU n 1 3 LEU n 1 4 PRO n 1 5 GLU n 1 6 VAL n 1 7 GLU n 1 8 THR n 1 9 ILE n 1 10 ARG n 1 11 ARG n 1 12 THR n 1 13 LEU n 1 14 LEU n 1 15 PRO n 1 16 LEU n 1 17 ILE n 1 18 VAL n 1 19 GLY n 1 20 LYS n 1 21 THR n 1 22 ILE n 1 23 GLU n 1 24 ASP n 1 25 VAL n 1 26 ARG n 1 27 ILE n 1 28 PHE n 1 29 TRP n 1 30 PRO n 1 31 ASN n 1 32 ILE n 1 33 ILE n 1 34 ARG n 1 35 HIS n 1 36 PRO n 1 37 ARG n 1 38 ASP n 1 39 SER n 1 40 GLU n 1 41 ALA n 1 42 PHE n 1 43 ALA n 1 44 ALA n 1 45 ARG n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLN n 1 50 THR n 1 51 VAL n 1 52 ARG n 1 53 GLY n 1 54 LEU n 1 55 GLU n 1 56 ARG n 1 57 ARG n 1 58 GLY n 1 59 LYS n 1 60 PHE n 1 61 LEU n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 LEU n 1 66 ASP n 1 67 ARG n 1 68 ASP n 1 69 ALA n 1 70 LEU n 1 71 ILE n 1 72 SER n 1 73 HIS n 1 74 LEU n 1 75 ARG n 1 76 MET n 1 77 GLU n 1 78 GLY n 1 79 ARG n 1 80 TYR n 1 81 ALA n 1 82 VAL n 1 83 ALA n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 GLU n 1 88 PRO n 1 89 LEU n 1 90 GLU n 1 91 PRO n 1 92 HIS n 1 93 THR n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 PHE n 1 98 CYS n 1 99 PHE n 1 100 THR n 1 101 ASP n 1 102 GLY n 1 103 SER n 1 104 GLU n 1 105 LEU n 1 106 ARG n 1 107 TYR n 1 108 ARG n 1 109 ASP n 1 110 VAL n 1 111 ARG n 1 112 LYS n 1 113 PHE n 1 114 GLY n 1 115 THR n 1 116 MET n 1 117 HIS n 1 118 VAL n 1 119 TYR n 1 120 ALA n 1 121 LYS n 1 122 GLU n 1 123 GLU n 1 124 ALA n 1 125 ASP n 1 126 ARG n 1 127 ARG n 1 128 PRO n 1 129 PRO n 1 130 LEU n 1 131 ALA n 1 132 GLU n 1 133 LEU n 1 134 GLY n 1 135 PRO n 1 136 GLU n 1 137 PRO n 1 138 LEU n 1 139 SER n 1 140 PRO n 1 141 ALA n 1 142 PHE n 1 143 SER n 1 144 PRO n 1 145 ALA n 1 146 VAL n 1 147 LEU n 1 148 ALA n 1 149 GLU n 1 150 ARG n 1 151 ALA n 1 152 VAL n 1 153 LYS n 1 154 THR n 1 155 LYS n 1 156 ARG n 1 157 SER n 1 158 VAL n 1 159 LYS n 1 160 ALA n 1 161 LEU n 1 162 LEU n 1 163 LEU n 1 164 ASP n 1 165 CYS n 1 166 THR n 1 167 VAL n 1 168 VAL n 1 169 ALA n 1 170 GLY n 1 171 PHE n 1 172 GLY n 1 173 ASN n 1 174 ILE n 1 175 TYR n 1 176 VAL n 1 177 ASP n 1 178 GLU n 1 179 SER n 1 180 LEU n 1 181 PHE n 1 182 ARG n 1 183 ALA n 1 184 GLY n 1 185 ILE n 1 186 LEU n 1 187 PRO n 1 188 GLY n 1 189 ARG n 1 190 PRO n 1 191 ALA n 1 192 ALA n 1 193 SER n 1 194 LEU n 1 195 SER n 1 196 SER n 1 197 LYS n 1 198 GLU n 1 199 ILE n 1 200 GLU n 1 201 ARG n 1 202 LEU n 1 203 HIS n 1 204 GLU n 1 205 GLU n 1 206 MET n 1 207 VAL n 1 208 ALA n 1 209 THR n 1 210 ILE n 1 211 GLY n 1 212 GLU n 1 213 ALA n 1 214 VAL n 1 215 MET n 1 216 LYS n 1 217 GLY n 1 218 GLN n 1 219 HIS n 1 220 HIS n 1 221 LEU n 1 222 TYR n 1 223 VAL n 1 224 TYR n 1 225 GLY n 1 226 ARG n 1 227 GLN n 1 228 GLY n 1 229 ASN n 1 230 PRO n 1 231 CYS n 1 232 LYS n 1 233 ARG n 1 234 CYS n 1 235 GLY n 1 236 THR n 1 237 PRO n 1 238 ILE n 1 239 GLU n 1 240 LYS n 1 241 THR n 1 242 VAL n 1 243 VAL n 1 244 ALA n 1 245 GLY n 1 246 ARG n 1 247 GLY n 1 248 THR n 1 249 HIS n 1 250 TYR n 1 251 CYS n 1 252 PRO n 1 253 ARG n 1 254 CYS n 1 255 GLN n 1 256 ARG n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DT n 2 10 DC n 2 11 DG n 2 12 DG n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DC n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DC n 3 7 DC n 3 8 8OG n 3 9 DA n 3 10 DG n 3 11 DT n 3 12 DC n 3 13 DT n 3 14 DA n 3 15 DC n 3 16 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Geobacillus stearothermophilus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MutM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) PlysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P84131_BACST P84131 1 ;LPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAV ASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALL LDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYG RQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; 4 ? 2 PDB 3GPU 3GPU 2 AGGTAGACTCGGACGC ? ? 3 PDB 3GPU 3GPU 3 TGCGTCCXAGTCTACC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GPU A 1 ? 256 ? P84131 2 ? 274 ? 2 274 2 2 3GPU B 1 ? 16 ? 3GPU 1 ? 16 ? 1 16 3 3 3GPU C 1 ? 16 ? 3GPU 1 ? 16 ? 1 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GPU GLU A 2 ? UNP P84131 GLN 3 conflict 3 1 1 3GPU CYS A 165 ? UNP P84131 GLN 166 'engineered mutation' 166 2 1 3GPU ? A ? ? UNP P84131 GLY 219 deletion ? 3 1 3GPU ? A ? ? UNP P84131 SER 220 deletion ? 4 1 3GPU ? A ? ? UNP P84131 THR 221 deletion ? 5 1 3GPU ? A ? ? UNP P84131 VAL 222 deletion ? 6 1 3GPU ? A ? ? UNP P84131 ARG 223 deletion ? 7 1 3GPU ? A ? ? UNP P84131 THR 224 deletion ? 8 1 3GPU ? A ? ? UNP P84131 TYR 225 deletion ? 9 1 3GPU ? A ? ? UNP P84131 VAL 226 deletion ? 10 1 3GPU ? A ? ? UNP P84131 ASN 227 deletion ? 11 1 3GPU ? A ? ? UNP P84131 THR 228 deletion ? 12 1 3GPU ? A ? ? UNP P84131 GLN 229 deletion ? 13 1 3GPU ? A ? ? UNP P84131 GLY 230 deletion ? 14 1 3GPU ? A ? ? UNP P84131 GLU 231 deletion ? 15 1 3GPU ? A ? ? UNP P84131 ALA 232 deletion ? 16 1 3GPU ? A ? ? UNP P84131 GLY 233 deletion ? 17 1 3GPU ? A ? ? UNP P84131 THR 234 deletion ? 18 1 3GPU ? A ? ? UNP P84131 PHE 235 deletion ? 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3GPU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'PEG 8K, sodium cacodylate, glycerol, pH 7.0, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 8K' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 glycerol ? ? ? 1 4 2 'PEG 8K' ? ? ? 1 5 2 'sodium cacodylate' ? ? ? 1 6 2 glycerol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 2005-08-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 # _reflns.entry_id 3GPU _reflns.d_resolution_high 1.620 _reflns.d_resolution_low 50.000 _reflns.number_obs 56204 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 25.882 _reflns.pdbx_chi_squared 1.037 _reflns.pdbx_redundancy 5.300 _reflns.percent_possible_obs 97.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.62 1.68 ? ? ? 0.495 ? ? 1.031 5.00 ? 5618 99.40 1 1 1.68 1.75 ? ? ? 0.349 ? ? 1.048 5.50 ? 5633 99.90 2 1 1.75 1.82 ? ? ? 0.253 ? ? 1.045 5.20 ? 5650 99.30 3 1 1.82 1.92 ? ? ? 0.173 ? ? 1.049 5.20 ? 5617 99.10 4 1 1.92 2.04 ? ? ? 0.120 ? ? 1.047 5.40 ? 5659 99.40 5 1 2.04 2.20 ? ? ? 0.084 ? ? 1.009 5.30 ? 5639 98.80 6 1 2.20 2.42 ? ? ? 0.065 ? ? 1.042 5.50 ? 5649 98.70 7 1 2.42 2.77 ? ? ? 0.063 ? ? 1.052 5.40 ? 5596 97.50 8 1 2.77 3.49 ? ? ? 0.052 ? ? 1.051 5.50 ? 5616 96.30 9 1 3.49 50.00 ? ? ? 0.034 ? ? 0.994 5.40 ? 5527 91.00 10 1 # _refine.entry_id 3GPU _refine.ls_d_res_high 1.620 _refine.ls_d_res_low 45.740 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.330 _refine.ls_number_reflns_obs 54101 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.204 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2748 _refine.B_iso_mean 26.277 _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.pdbx_overall_ESU_R 0.083 _refine.pdbx_overall_ESU_R_Free 0.079 _refine.overall_SU_ML 0.049 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct . _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 85.56 _refine.B_iso_min 10.51 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'pdb entry 2F5O, protein part only' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1962 _refine_hist.pdbx_number_atoms_nucleic_acid 515 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 287 _refine_hist.number_atoms_total 2765 _refine_hist.d_res_high 1.620 _refine_hist.d_res_low 45.740 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2616 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3649 1.333 2.228 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 255 5.537 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 90 25.783 20.778 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 348 12.568 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 29 15.593 15.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.620 _refine_ls_shell.d_res_low 1.662 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.830 _refine_ls_shell.number_reflns_R_work 3477 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.R_factor_R_free 0.267 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 198 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3675 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GPU _struct.title 'MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GPU _struct_keywords.text ;DNA glycosylase, DNA repair, damage search, base extrusion, disulfide crosslinking, DNA damage, DNA-binding, Glycosidase, Hydrolase, Lyase, Metal-binding, Multifunctional enzyme, Zinc-finger, Lyase-DNA COMPLEX ; _struct_keywords.pdbx_keywords Lyase/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? VAL A 18 ? GLU A 3 VAL A 19 1 ? 17 HELX_P HELX_P2 2 TRP A 29 ? ASN A 31 ? TRP A 30 ASN A 32 5 ? 3 HELX_P HELX_P3 3 ASP A 38 ? ILE A 47 ? ASP A 39 ILE A 48 1 ? 10 HELX_P HELX_P4 4 GLU A 122 ? ARG A 127 ? GLU A 123 ARG A 128 5 ? 6 HELX_P HELX_P5 5 SER A 143 ? LYS A 153 ? SER A 144 LYS A 154 1 ? 11 HELX_P HELX_P6 6 SER A 157 ? ASP A 164 ? SER A 158 ASP A 165 1 ? 8 HELX_P HELX_P7 7 GLY A 172 ? GLY A 184 ? GLY A 173 GLY A 185 1 ? 13 HELX_P HELX_P8 8 PRO A 190 ? LEU A 194 ? PRO A 191 LEU A 195 5 ? 5 HELX_P HELX_P9 9 SER A 195 ? MET A 215 ? SER A 196 MET A 216 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DC 7 "O3'" ? ? ? 1_555 C 8OG 8 P ? ? C DC 7 C 8OG 8 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? C 8OG 8 "O3'" ? ? ? 1_555 C DA 9 P ? ? C 8OG 8 C DA 9 1_555 ? ? ? ? ? ? ? 1.601 ? ? metalc1 metalc ? ? A CYS 231 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 249 A ZN 300 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc2 metalc ? ? A CYS 234 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 252 A ZN 300 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc3 metalc ? ? A CYS 251 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 269 A ZN 300 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc4 metalc ? ? A CYS 254 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 272 A ZN 300 1_555 ? ? ? ? ? ? ? 2.330 ? ? hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? B DG 3 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 15 O2 ? ? B DG 3 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 15 N4 ? ? B DG 3 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 8 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 8 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 8 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 9 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 9 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C 8OG 8 N1 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C 8OG 8 O6 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C 8OG 8 N2 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 11 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 11 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 11 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 13 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 13 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 14 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 14 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 14 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 35 A . ? HIS 36 A PRO 36 A ? PRO 37 A 1 -12.46 2 PRO 128 A . ? PRO 129 A PRO 129 A ? PRO 130 A 1 3.43 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 22 ? ILE A 27 ? ILE A 23 ILE A 28 A 2 THR A 93 ? PHE A 99 ? THR A 94 PHE A 100 A 3 SER A 103 ? ARG A 108 ? SER A 104 ARG A 109 A 4 ARG A 79 ? SER A 84 ? ARG A 80 SER A 85 B 1 ILE A 33 ? HIS A 35 ? ILE A 34 HIS A 36 B 2 THR A 115 ? ALA A 120 ? THR A 116 ALA A 121 B 3 ASP A 68 ? HIS A 73 ? ASP A 69 HIS A 74 B 4 PHE A 60 ? LEU A 64 ? PHE A 61 LEU A 65 B 5 GLY A 53 ? ARG A 57 ? GLY A 54 ARG A 58 C 1 GLU A 239 ? VAL A 243 ? GLU A 257 VAL A 261 C 2 ARG A 246 ? TYR A 250 ? ARG A 264 TYR A 268 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 23 ? N GLU A 24 O CYS A 98 ? O CYS A 99 A 2 3 N PHE A 99 ? N PHE A 100 O SER A 103 ? O SER A 104 A 3 4 O ARG A 106 ? O ARG A 107 N ALA A 81 ? N ALA A 82 B 1 2 N ARG A 34 ? N ARG A 35 O MET A 116 ? O MET A 117 B 2 3 O HIS A 117 ? O HIS A 118 N ILE A 71 ? N ILE A 72 B 3 4 O LEU A 70 ? O LEU A 71 N PHE A 63 ? N PHE A 64 B 4 5 O LYS A 62 ? O LYS A 63 N GLU A 55 ? N GLU A 56 C 1 2 N GLU A 239 ? N GLU A 257 O TYR A 250 ? O TYR A 268 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 231 ? CYS A 249 . ? 1_555 ? 2 AC1 4 CYS A 234 ? CYS A 252 . ? 1_555 ? 3 AC1 4 CYS A 251 ? CYS A 269 . ? 1_555 ? 4 AC1 4 CYS A 254 ? CYS A 272 . ? 1_555 ? # _atom_sites.entry_id 3GPU _atom_sites.fract_transf_matrix[1][1] 0.022115 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009526 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 GLU 2 3 3 GLU GLU A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 GLU 5 6 6 GLU GLU A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 THR 8 9 9 THR THR A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ARG 10 11 11 ARG ARG A . n A 1 11 ARG 11 12 12 ARG ARG A . n A 1 12 THR 12 13 13 THR THR A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 PRO 15 16 16 PRO PRO A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ILE 17 18 18 ILE ILE A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 THR 21 22 22 THR THR A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 ARG 26 27 27 ARG ARG A . n A 1 27 ILE 27 28 28 ILE ILE A . n A 1 28 PHE 28 29 29 PHE PHE A . n A 1 29 TRP 29 30 30 TRP TRP A . n A 1 30 PRO 30 31 31 PRO PRO A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 ILE 32 33 33 ILE ILE A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 HIS 35 36 36 HIS HIS A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 ARG 45 46 46 ARG ARG A . n A 1 46 MET 46 47 47 MET MET A . n A 1 47 ILE 47 48 48 ILE ILE A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 GLN 49 50 50 GLN GLN A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 ARG 52 53 53 ARG ARG A . n A 1 53 GLY 53 54 54 GLY GLY A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 ARG 57 58 58 ARG ARG A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 LYS 62 63 63 LYS LYS A . n A 1 63 PHE 63 64 64 PHE PHE A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 ASP 68 69 69 ASP ASP A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 LEU 70 71 71 LEU LEU A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 SER 72 73 73 SER SER A . n A 1 73 HIS 73 74 74 HIS HIS A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 GLU 77 78 78 GLU GLU A . n A 1 78 GLY 78 79 79 GLY GLY A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 TYR 80 81 81 TYR TYR A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 PRO 88 89 89 PRO PRO A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 PRO 91 92 92 PRO PRO A . n A 1 92 HIS 92 93 93 HIS HIS A . n A 1 93 THR 93 94 94 THR THR A . n A 1 94 HIS 94 95 95 HIS HIS A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 PHE 97 98 98 PHE PHE A . n A 1 98 CYS 98 99 99 CYS CYS A . n A 1 99 PHE 99 100 100 PHE PHE A . n A 1 100 THR 100 101 101 THR THR A . n A 1 101 ASP 101 102 102 ASP ASP A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 SER 103 104 104 SER SER A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 ARG 106 107 107 ARG ARG A . n A 1 107 TYR 107 108 108 TYR TYR A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 VAL 110 111 111 VAL VAL A . n A 1 111 ARG 111 112 112 ARG ARG A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 PHE 113 114 114 PHE PHE A . n A 1 114 GLY 114 115 115 GLY GLY A . n A 1 115 THR 115 116 116 THR THR A . n A 1 116 MET 116 117 117 MET MET A . n A 1 117 HIS 117 118 118 HIS HIS A . n A 1 118 VAL 118 119 119 VAL VAL A . n A 1 119 TYR 119 120 120 TYR TYR A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 GLU 122 123 123 GLU GLU A . n A 1 123 GLU 123 124 124 GLU GLU A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 ARG 126 127 127 ARG ARG A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 GLU 132 133 133 GLU GLU A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 GLY 134 135 135 GLY GLY A . n A 1 135 PRO 135 136 136 PRO PRO A . n A 1 136 GLU 136 137 137 GLU GLU A . n A 1 137 PRO 137 138 138 PRO PRO A . n A 1 138 LEU 138 139 139 LEU LEU A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 PRO 140 141 141 PRO PRO A . n A 1 141 ALA 141 142 142 ALA ALA A . n A 1 142 PHE 142 143 143 PHE PHE A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 PRO 144 145 145 PRO PRO A . n A 1 145 ALA 145 146 146 ALA ALA A . n A 1 146 VAL 146 147 147 VAL VAL A . n A 1 147 LEU 147 148 148 LEU LEU A . n A 1 148 ALA 148 149 149 ALA ALA A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 ARG 150 151 151 ARG ARG A . n A 1 151 ALA 151 152 152 ALA ALA A . n A 1 152 VAL 152 153 153 VAL VAL A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 THR 154 155 155 THR THR A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 ARG 156 157 157 ARG ARG A . n A 1 157 SER 157 158 158 SER SER A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 LYS 159 160 160 LYS LYS A . n A 1 160 ALA 160 161 161 ALA ALA A . n A 1 161 LEU 161 162 162 LEU LEU A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 ASP 164 165 165 ASP ASP A . n A 1 165 CYS 165 166 166 CYS CYS A . n A 1 166 THR 166 167 167 THR THR A . n A 1 167 VAL 167 168 168 VAL VAL A . n A 1 168 VAL 168 169 169 VAL VAL A . n A 1 169 ALA 169 170 170 ALA ALA A . n A 1 170 GLY 170 171 171 GLY GLY A . n A 1 171 PHE 171 172 172 PHE PHE A . n A 1 172 GLY 172 173 173 GLY GLY A . n A 1 173 ASN 173 174 174 ASN ASN A . n A 1 174 ILE 174 175 175 ILE ILE A . n A 1 175 TYR 175 176 176 TYR TYR A . n A 1 176 VAL 176 177 177 VAL VAL A . n A 1 177 ASP 177 178 178 ASP ASP A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 SER 179 180 180 SER SER A . n A 1 180 LEU 180 181 181 LEU LEU A . n A 1 181 PHE 181 182 182 PHE PHE A . n A 1 182 ARG 182 183 183 ARG ARG A . n A 1 183 ALA 183 184 184 ALA ALA A . n A 1 184 GLY 184 185 185 GLY GLY A . n A 1 185 ILE 185 186 186 ILE ILE A . n A 1 186 LEU 186 187 187 LEU LEU A . n A 1 187 PRO 187 188 188 PRO PRO A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 ARG 189 190 190 ARG ARG A . n A 1 190 PRO 190 191 191 PRO PRO A . n A 1 191 ALA 191 192 192 ALA ALA A . n A 1 192 ALA 192 193 193 ALA ALA A . n A 1 193 SER 193 194 194 SER SER A . n A 1 194 LEU 194 195 195 LEU LEU A . n A 1 195 SER 195 196 196 SER SER A . n A 1 196 SER 196 197 197 SER SER A . n A 1 197 LYS 197 198 198 LYS LYS A . n A 1 198 GLU 198 199 199 GLU GLU A . n A 1 199 ILE 199 200 200 ILE ILE A . n A 1 200 GLU 200 201 201 GLU GLU A . n A 1 201 ARG 201 202 202 ARG ARG A . n A 1 202 LEU 202 203 203 LEU LEU A . n A 1 203 HIS 203 204 204 HIS HIS A . n A 1 204 GLU 204 205 205 GLU GLU A . n A 1 205 GLU 205 206 206 GLU GLU A . n A 1 206 MET 206 207 207 MET MET A . n A 1 207 VAL 207 208 208 VAL VAL A . n A 1 208 ALA 208 209 209 ALA ALA A . n A 1 209 THR 209 210 210 THR THR A . n A 1 210 ILE 210 211 211 ILE ILE A . n A 1 211 GLY 211 212 212 GLY GLY A . n A 1 212 GLU 212 213 213 GLU GLU A . n A 1 213 ALA 213 214 214 ALA ALA A . n A 1 214 VAL 214 215 215 VAL VAL A . n A 1 215 MET 215 216 216 MET MET A . n A 1 216 LYS 216 234 ? ? ? A . n A 1 217 GLY 217 235 ? ? ? A . n A 1 218 GLN 218 236 ? ? ? A . n A 1 219 HIS 219 237 ? ? ? A . n A 1 220 HIS 220 238 ? ? ? A . n A 1 221 LEU 221 239 239 LEU LEU A . n A 1 222 TYR 222 240 240 TYR TYR A . n A 1 223 VAL 223 241 241 VAL VAL A . n A 1 224 TYR 224 242 242 TYR TYR A . n A 1 225 GLY 225 243 243 GLY GLY A . n A 1 226 ARG 226 244 244 ARG ARG A . n A 1 227 GLN 227 245 245 GLN GLN A . n A 1 228 GLY 228 246 246 GLY GLY A . n A 1 229 ASN 229 247 247 ASN ASN A . n A 1 230 PRO 230 248 248 PRO PRO A . n A 1 231 CYS 231 249 249 CYS CYS A . n A 1 232 LYS 232 250 250 LYS LYS A . n A 1 233 ARG 233 251 251 ARG ARG A . n A 1 234 CYS 234 252 252 CYS CYS A . n A 1 235 GLY 235 253 253 GLY GLY A . n A 1 236 THR 236 254 254 THR THR A . n A 1 237 PRO 237 255 255 PRO PRO A . n A 1 238 ILE 238 256 256 ILE ILE A . n A 1 239 GLU 239 257 257 GLU GLU A . n A 1 240 LYS 240 258 258 LYS LYS A . n A 1 241 THR 241 259 259 THR THR A . n A 1 242 VAL 242 260 260 VAL VAL A . n A 1 243 VAL 243 261 261 VAL VAL A . n A 1 244 ALA 244 262 262 ALA ALA A . n A 1 245 GLY 245 263 263 GLY GLY A . n A 1 246 ARG 246 264 264 ARG ARG A . n A 1 247 GLY 247 265 265 GLY GLY A . n A 1 248 THR 248 266 266 THR THR A . n A 1 249 HIS 249 267 267 HIS HIS A . n A 1 250 TYR 250 268 268 TYR TYR A . n A 1 251 CYS 251 269 269 CYS CYS A . n A 1 252 PRO 252 270 270 PRO PRO A . n A 1 253 ARG 253 271 271 ARG ARG A . n A 1 254 CYS 254 272 272 CYS CYS A . n A 1 255 GLN 255 273 273 GLN GLN A . n A 1 256 ARG 256 274 274 ARG ARG A . n B 2 1 DA 1 1 ? ? ? B . n B 2 2 DG 2 2 2 DG G B . n B 2 3 DG 3 3 3 DG G B . n B 2 4 DT 4 4 4 DT T B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DG 6 6 6 DG G B . n B 2 7 DA 7 7 7 DA A B . n B 2 8 DC 8 8 8 DC C B . n B 2 9 DT 9 9 9 DT T B . n B 2 10 DC 10 10 10 DC C B . n B 2 11 DG 11 11 11 DG G B . n B 2 12 DG 12 12 12 DG G B . n B 2 13 DA 13 13 13 DA A B . n B 2 14 DC 14 14 14 DC C B . n B 2 15 DG 15 15 ? ? ? B . n B 2 16 DC 16 16 ? ? ? B . n C 3 1 DT 1 1 ? ? ? C . n C 3 2 DG 2 2 ? ? ? C . n C 3 3 DC 3 3 ? ? ? C . n C 3 4 DG 4 4 4 DG G C . n C 3 5 DT 5 5 5 DT T C . n C 3 6 DC 6 6 6 DC C C . n C 3 7 DC 7 7 7 DC C C . n C 3 8 8OG 8 8 8 8OG 8OG C . n C 3 9 DA 9 9 9 DA A C . n C 3 10 DG 10 10 10 DG G C . n C 3 11 DT 11 11 11 DT T C . n C 3 12 DC 12 12 12 DC C C . n C 3 13 DT 13 13 13 DT T C . n C 3 14 DA 14 14 14 DA A C . n C 3 15 DC 15 15 15 DC C C . n C 3 16 DC 16 16 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 300 300 ZN ZN A . E 5 HOH 1 1 1 HOH HOH A . E 5 HOH 2 217 217 HOH HOH A . E 5 HOH 3 218 218 HOH HOH A . E 5 HOH 4 219 219 HOH HOH A . E 5 HOH 5 220 220 HOH HOH A . E 5 HOH 6 222 222 HOH HOH A . E 5 HOH 7 223 223 HOH HOH A . E 5 HOH 8 224 224 HOH HOH A . E 5 HOH 9 225 225 HOH HOH A . E 5 HOH 10 226 226 HOH HOH A . E 5 HOH 11 227 227 HOH HOH A . E 5 HOH 12 228 228 HOH HOH A . E 5 HOH 13 230 230 HOH HOH A . E 5 HOH 14 231 231 HOH HOH A . E 5 HOH 15 232 232 HOH HOH A . E 5 HOH 16 233 233 HOH HOH A . E 5 HOH 17 275 275 HOH HOH A . E 5 HOH 18 276 276 HOH HOH A . E 5 HOH 19 277 2 HOH HOH A . E 5 HOH 20 278 278 HOH HOH A . E 5 HOH 21 279 279 HOH HOH A . E 5 HOH 22 280 280 HOH HOH A . E 5 HOH 23 281 281 HOH HOH A . E 5 HOH 24 282 282 HOH HOH A . E 5 HOH 25 283 283 HOH HOH A . E 5 HOH 26 284 284 HOH HOH A . E 5 HOH 27 285 3 HOH HOH A . E 5 HOH 28 286 286 HOH HOH A . E 5 HOH 29 287 287 HOH HOH A . E 5 HOH 30 288 4 HOH HOH A . E 5 HOH 31 289 5 HOH HOH A . E 5 HOH 32 290 6 HOH HOH A . E 5 HOH 33 291 7 HOH HOH A . E 5 HOH 34 292 8 HOH HOH A . E 5 HOH 35 293 9 HOH HOH A . E 5 HOH 36 294 10 HOH HOH A . E 5 HOH 37 295 11 HOH HOH A . E 5 HOH 38 296 12 HOH HOH A . E 5 HOH 39 297 13 HOH HOH A . E 5 HOH 40 298 14 HOH HOH A . E 5 HOH 41 299 15 HOH HOH A . E 5 HOH 42 301 16 HOH HOH A . E 5 HOH 43 302 17 HOH HOH A . E 5 HOH 44 303 18 HOH HOH A . E 5 HOH 45 304 19 HOH HOH A . E 5 HOH 46 305 20 HOH HOH A . E 5 HOH 47 306 21 HOH HOH A . E 5 HOH 48 307 22 HOH HOH A . E 5 HOH 49 308 23 HOH HOH A . E 5 HOH 50 309 24 HOH HOH A . E 5 HOH 51 310 25 HOH HOH A . E 5 HOH 52 311 26 HOH HOH A . E 5 HOH 53 312 27 HOH HOH A . E 5 HOH 54 313 28 HOH HOH A . E 5 HOH 55 314 29 HOH HOH A . E 5 HOH 56 315 30 HOH HOH A . E 5 HOH 57 316 31 HOH HOH A . E 5 HOH 58 317 32 HOH HOH A . E 5 HOH 59 318 33 HOH HOH A . E 5 HOH 60 319 34 HOH HOH A . E 5 HOH 61 320 35 HOH HOH A . E 5 HOH 62 321 36 HOH HOH A . E 5 HOH 63 322 37 HOH HOH A . E 5 HOH 64 323 38 HOH HOH A . E 5 HOH 65 324 39 HOH HOH A . E 5 HOH 66 325 40 HOH HOH A . E 5 HOH 67 326 41 HOH HOH A . E 5 HOH 68 327 42 HOH HOH A . E 5 HOH 69 328 43 HOH HOH A . E 5 HOH 70 329 44 HOH HOH A . E 5 HOH 71 330 45 HOH HOH A . E 5 HOH 72 331 46 HOH HOH A . E 5 HOH 73 332 47 HOH HOH A . E 5 HOH 74 333 48 HOH HOH A . E 5 HOH 75 334 49 HOH HOH A . E 5 HOH 76 335 50 HOH HOH A . E 5 HOH 77 336 51 HOH HOH A . E 5 HOH 78 337 52 HOH HOH A . E 5 HOH 79 338 53 HOH HOH A . E 5 HOH 80 339 54 HOH HOH A . E 5 HOH 81 340 55 HOH HOH A . E 5 HOH 82 341 56 HOH HOH A . E 5 HOH 83 342 57 HOH HOH A . E 5 HOH 84 343 58 HOH HOH A . E 5 HOH 85 344 59 HOH HOH A . E 5 HOH 86 345 60 HOH HOH A . E 5 HOH 87 346 61 HOH HOH A . E 5 HOH 88 347 62 HOH HOH A . E 5 HOH 89 348 63 HOH HOH A . E 5 HOH 90 349 64 HOH HOH A . E 5 HOH 91 350 65 HOH HOH A . E 5 HOH 92 351 66 HOH HOH A . E 5 HOH 93 352 67 HOH HOH A . E 5 HOH 94 353 68 HOH HOH A . E 5 HOH 95 354 69 HOH HOH A . E 5 HOH 96 355 70 HOH HOH A . E 5 HOH 97 356 71 HOH HOH A . E 5 HOH 98 357 72 HOH HOH A . E 5 HOH 99 358 73 HOH HOH A . E 5 HOH 100 359 74 HOH HOH A . E 5 HOH 101 360 75 HOH HOH A . E 5 HOH 102 361 76 HOH HOH A . E 5 HOH 103 362 77 HOH HOH A . E 5 HOH 104 363 78 HOH HOH A . E 5 HOH 105 364 79 HOH HOH A . E 5 HOH 106 365 80 HOH HOH A . E 5 HOH 107 366 81 HOH HOH A . E 5 HOH 108 367 82 HOH HOH A . E 5 HOH 109 368 83 HOH HOH A . E 5 HOH 110 369 84 HOH HOH A . E 5 HOH 111 370 85 HOH HOH A . E 5 HOH 112 371 86 HOH HOH A . E 5 HOH 113 372 87 HOH HOH A . E 5 HOH 114 373 88 HOH HOH A . E 5 HOH 115 374 89 HOH HOH A . E 5 HOH 116 375 90 HOH HOH A . E 5 HOH 117 376 91 HOH HOH A . E 5 HOH 118 377 92 HOH HOH A . E 5 HOH 119 378 93 HOH HOH A . E 5 HOH 120 379 94 HOH HOH A . E 5 HOH 121 380 95 HOH HOH A . E 5 HOH 122 381 96 HOH HOH A . E 5 HOH 123 382 97 HOH HOH A . E 5 HOH 124 383 98 HOH HOH A . E 5 HOH 125 384 99 HOH HOH A . E 5 HOH 126 385 100 HOH HOH A . E 5 HOH 127 386 101 HOH HOH A . E 5 HOH 128 387 102 HOH HOH A . E 5 HOH 129 388 103 HOH HOH A . E 5 HOH 130 389 104 HOH HOH A . E 5 HOH 131 390 105 HOH HOH A . E 5 HOH 132 391 106 HOH HOH A . E 5 HOH 133 392 107 HOH HOH A . E 5 HOH 134 393 108 HOH HOH A . E 5 HOH 135 394 109 HOH HOH A . E 5 HOH 136 395 110 HOH HOH A . E 5 HOH 137 396 111 HOH HOH A . E 5 HOH 138 397 112 HOH HOH A . E 5 HOH 139 398 113 HOH HOH A . E 5 HOH 140 399 114 HOH HOH A . E 5 HOH 141 400 115 HOH HOH A . E 5 HOH 142 401 116 HOH HOH A . E 5 HOH 143 402 117 HOH HOH A . E 5 HOH 144 403 118 HOH HOH A . E 5 HOH 145 404 119 HOH HOH A . E 5 HOH 146 405 120 HOH HOH A . E 5 HOH 147 406 121 HOH HOH A . E 5 HOH 148 407 122 HOH HOH A . E 5 HOH 149 408 123 HOH HOH A . E 5 HOH 150 409 124 HOH HOH A . E 5 HOH 151 410 125 HOH HOH A . E 5 HOH 152 411 126 HOH HOH A . E 5 HOH 153 412 127 HOH HOH A . E 5 HOH 154 413 128 HOH HOH A . E 5 HOH 155 414 129 HOH HOH A . E 5 HOH 156 415 130 HOH HOH A . E 5 HOH 157 416 131 HOH HOH A . E 5 HOH 158 417 132 HOH HOH A . E 5 HOH 159 418 133 HOH HOH A . E 5 HOH 160 419 134 HOH HOH A . E 5 HOH 161 420 135 HOH HOH A . E 5 HOH 162 421 136 HOH HOH A . E 5 HOH 163 422 137 HOH HOH A . E 5 HOH 164 423 138 HOH HOH A . E 5 HOH 165 424 139 HOH HOH A . E 5 HOH 166 425 140 HOH HOH A . E 5 HOH 167 426 141 HOH HOH A . E 5 HOH 168 427 142 HOH HOH A . E 5 HOH 169 428 143 HOH HOH A . E 5 HOH 170 429 144 HOH HOH A . E 5 HOH 171 430 145 HOH HOH A . E 5 HOH 172 431 146 HOH HOH A . E 5 HOH 173 432 147 HOH HOH A . E 5 HOH 174 433 148 HOH HOH A . E 5 HOH 175 434 149 HOH HOH A . E 5 HOH 176 435 150 HOH HOH A . E 5 HOH 177 436 151 HOH HOH A . E 5 HOH 178 437 152 HOH HOH A . E 5 HOH 179 438 153 HOH HOH A . E 5 HOH 180 439 154 HOH HOH A . E 5 HOH 181 440 155 HOH HOH A . E 5 HOH 182 441 156 HOH HOH A . E 5 HOH 183 442 157 HOH HOH A . E 5 HOH 184 443 158 HOH HOH A . E 5 HOH 185 444 159 HOH HOH A . E 5 HOH 186 445 160 HOH HOH A . E 5 HOH 187 446 161 HOH HOH A . E 5 HOH 188 447 162 HOH HOH A . E 5 HOH 189 448 163 HOH HOH A . E 5 HOH 190 449 164 HOH HOH A . E 5 HOH 191 450 165 HOH HOH A . E 5 HOH 192 451 166 HOH HOH A . E 5 HOH 193 452 167 HOH HOH A . E 5 HOH 194 453 168 HOH HOH A . E 5 HOH 195 454 169 HOH HOH A . E 5 HOH 196 455 170 HOH HOH A . E 5 HOH 197 456 171 HOH HOH A . E 5 HOH 198 457 172 HOH HOH A . E 5 HOH 199 458 173 HOH HOH A . E 5 HOH 200 459 174 HOH HOH A . E 5 HOH 201 460 175 HOH HOH A . E 5 HOH 202 461 176 HOH HOH A . E 5 HOH 203 462 177 HOH HOH A . E 5 HOH 204 463 178 HOH HOH A . E 5 HOH 205 464 179 HOH HOH A . E 5 HOH 206 465 180 HOH HOH A . E 5 HOH 207 466 181 HOH HOH A . E 5 HOH 208 467 182 HOH HOH A . E 5 HOH 209 468 183 HOH HOH A . E 5 HOH 210 469 184 HOH HOH A . E 5 HOH 211 470 185 HOH HOH A . E 5 HOH 212 471 186 HOH HOH A . E 5 HOH 213 472 187 HOH HOH A . E 5 HOH 214 473 188 HOH HOH A . E 5 HOH 215 474 189 HOH HOH A . E 5 HOH 216 475 190 HOH HOH A . E 5 HOH 217 476 191 HOH HOH A . E 5 HOH 218 477 192 HOH HOH A . E 5 HOH 219 478 193 HOH HOH A . E 5 HOH 220 479 194 HOH HOH A . E 5 HOH 221 480 195 HOH HOH A . E 5 HOH 222 481 196 HOH HOH A . E 5 HOH 223 482 197 HOH HOH A . E 5 HOH 224 483 198 HOH HOH A . E 5 HOH 225 484 199 HOH HOH A . E 5 HOH 226 485 200 HOH HOH A . E 5 HOH 227 486 201 HOH HOH A . E 5 HOH 228 487 202 HOH HOH A . E 5 HOH 229 488 203 HOH HOH A . E 5 HOH 230 489 204 HOH HOH A . E 5 HOH 231 490 205 HOH HOH A . E 5 HOH 232 491 206 HOH HOH A . E 5 HOH 233 492 207 HOH HOH A . E 5 HOH 234 493 208 HOH HOH A . E 5 HOH 235 494 209 HOH HOH A . E 5 HOH 236 495 210 HOH HOH A . E 5 HOH 237 496 211 HOH HOH A . E 5 HOH 238 497 212 HOH HOH A . E 5 HOH 239 498 213 HOH HOH A . E 5 HOH 240 499 214 HOH HOH A . E 5 HOH 241 500 215 HOH HOH A . E 5 HOH 242 501 216 HOH HOH A . E 5 HOH 243 502 235 HOH HOH A . E 5 HOH 244 503 236 HOH HOH A . E 5 HOH 245 504 237 HOH HOH A . E 5 HOH 246 505 238 HOH HOH A . E 5 HOH 247 506 239 HOH HOH A . E 5 HOH 248 507 240 HOH HOH A . E 5 HOH 249 508 241 HOH HOH A . E 5 HOH 250 509 242 HOH HOH A . E 5 HOH 251 510 243 HOH HOH A . E 5 HOH 252 511 244 HOH HOH A . E 5 HOH 253 512 245 HOH HOH A . E 5 HOH 254 513 246 HOH HOH A . E 5 HOH 255 514 247 HOH HOH A . E 5 HOH 256 515 248 HOH HOH A . E 5 HOH 257 516 249 HOH HOH A . E 5 HOH 258 517 250 HOH HOH A . E 5 HOH 259 518 251 HOH HOH A . E 5 HOH 260 519 252 HOH HOH A . E 5 HOH 261 520 253 HOH HOH A . E 5 HOH 262 521 254 HOH HOH A . E 5 HOH 263 522 255 HOH HOH A . E 5 HOH 264 523 256 HOH HOH A . E 5 HOH 265 524 257 HOH HOH A . E 5 HOH 266 525 258 HOH HOH A . E 5 HOH 267 526 259 HOH HOH A . E 5 HOH 268 527 260 HOH HOH A . E 5 HOH 269 528 261 HOH HOH A . E 5 HOH 270 529 262 HOH HOH A . E 5 HOH 271 530 263 HOH HOH A . E 5 HOH 272 531 264 HOH HOH A . E 5 HOH 273 532 265 HOH HOH A . E 5 HOH 274 533 266 HOH HOH A . E 5 HOH 275 534 267 HOH HOH A . E 5 HOH 276 535 268 HOH HOH A . E 5 HOH 277 536 269 HOH HOH A . E 5 HOH 278 537 270 HOH HOH A . E 5 HOH 279 538 271 HOH HOH A . E 5 HOH 280 539 272 HOH HOH A . E 5 HOH 281 540 273 HOH HOH A . E 5 HOH 282 541 274 HOH HOH A . F 5 HOH 1 221 221 HOH HOH B . F 5 HOH 2 277 277 HOH HOH B . F 5 HOH 3 285 285 HOH HOH B . G 5 HOH 1 229 229 HOH HOH C . G 5 HOH 2 234 234 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id 8OG _pdbx_struct_mod_residue.label_seq_id 8 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id 8OG _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3730 ? 1 MORE -18 ? 1 'SSA (A^2)' 14450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 231 ? A CYS 249 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 234 ? A CYS 252 ? 1_555 109.9 ? 2 SG ? A CYS 231 ? A CYS 249 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 269 ? 1_555 110.9 ? 3 SG ? A CYS 234 ? A CYS 252 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 269 ? 1_555 98.3 ? 4 SG ? A CYS 231 ? A CYS 249 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 254 ? A CYS 272 ? 1_555 109.3 ? 5 SG ? A CYS 234 ? A CYS 252 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 254 ? A CYS 272 ? 1_555 111.6 ? 6 SG ? A CYS 251 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 254 ? A CYS 272 ? 1_555 116.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 21.1480 -13.1430 9.7770 -0.0342 -0.0117 -0.0632 -0.0077 -0.0093 -0.0092 0.9814 1.3719 1.4358 0.0526 -0.3654 0.4497 0.0109 -0.0056 -0.0053 -0.1104 0.0482 -0.0966 0.0064 -0.0362 0.0987 'X-RAY DIFFRACTION' 2 ? refined 13.4630 -14.9000 4.8810 -0.0047 -0.0072 -0.0455 0.0093 -0.0071 -0.0127 0.7293 1.3968 0.8181 0.0446 -0.1060 0.6520 0.0455 -0.0673 0.0217 0.0034 0.0233 0.0280 -0.0338 -0.0455 -0.0900 'X-RAY DIFFRACTION' 3 ? refined 24.9450 -18.1160 13.0910 0.0207 0.0194 -0.0630 0.0060 0.0082 -0.0128 1.0365 0.7304 0.5519 -0.4988 -0.5095 0.3581 -0.0088 0.0346 -0.0257 -0.1456 0.0366 -0.0514 0.0982 0.0245 0.1050 'X-RAY DIFFRACTION' 4 ? refined 5.9330 -3.7300 12.2630 -0.0062 0.0249 -0.0321 0.0203 -0.0195 -0.0525 0.0215 1.0890 1.4708 0.0477 0.0502 1.2650 0.0105 -0.2200 0.2095 -0.0115 0.0099 0.1423 -0.2021 -0.0634 -0.2026 'X-RAY DIFFRACTION' 5 ? refined 5.8630 7.5780 26.1520 -0.0095 -0.0259 -0.0359 0.0107 -0.0036 -0.0760 0.7644 1.3973 2.5503 -0.1166 0.0491 1.3101 0.0734 -0.1857 0.1123 0.0593 0.0048 0.1109 0.0500 0.0765 -0.1091 'X-RAY DIFFRACTION' 6 ? refined 13.2360 12.5370 19.8210 0.0535 -0.0563 -0.0682 0.0075 0.0226 -0.0133 13.5251 6.9700 2.6540 -6.5155 -2.6734 2.8665 0.3041 -0.2252 -0.0790 0.1770 0.3453 -0.3681 -0.5178 -0.4260 0.0927 'X-RAY DIFFRACTION' 7 ? refined 14.7500 7.9610 36.5280 0.0408 -0.0345 -0.0686 -0.0051 -0.0033 -0.0398 1.2207 3.0331 2.4658 1.3744 1.2092 2.2732 0.1210 -0.0685 -0.0525 0.0084 -0.0008 -0.0155 0.2908 0.2417 0.0422 'X-RAY DIFFRACTION' 8 ? refined 3.7230 -12.5440 28.1820 0.0487 -0.0086 -0.0238 0.0057 0.0735 -0.0411 3.2968 2.2407 0.7723 -0.3157 -0.0102 -0.3515 -0.1248 0.1172 0.0076 -0.3171 0.0224 0.5210 0.3512 0.0165 -0.0718 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 34 ? 2 . . . . 'X-RAY DIFFRACTION' ? 2 2 A A 73 ? 35 . . . . 'X-RAY DIFFRACTION' ? 3 3 A A 110 ? 74 . . . . 'X-RAY DIFFRACTION' ? 4 4 A A 154 ? 111 . . . . 'X-RAY DIFFRACTION' ? 5 5 A A 199 ? 155 . . . . 'X-RAY DIFFRACTION' ? 6 6 A A 216 ? 200 . . . . 'X-RAY DIFFRACTION' ? 7 7 A A 274 ? 239 . . . . 'X-RAY DIFFRACTION' ? 8 8 B B 14 ? 2 . . . . 'X-RAY DIFFRACTION' ? 9 8 C C 15 ? 4 . . . . 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.4.0066 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 110.21 106.80 3.41 0.50 N 2 1 "O4'" C DG 10 ? ? "C1'" C DG 10 ? ? N9 C DG 10 ? ? 112.43 108.30 4.13 0.30 N 3 1 "O4'" C DA 14 ? ? "C1'" C DA 14 ? ? N9 C DA 14 ? ? 110.11 108.30 1.81 0.30 N 4 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 112.07 108.30 3.77 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 66 ? ? -108.63 -159.85 2 1 ARG A 76 ? ? 49.94 -139.62 3 1 ASP A 110 ? ? -164.13 117.02 4 1 GLU A 133 ? ? 79.99 -4.82 5 1 VAL A 241 ? ? -134.37 -35.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 38 ? CD ? A ARG 37 CD 2 1 Y 1 A ARG 38 ? NE ? A ARG 37 NE 3 1 Y 1 A ARG 38 ? CZ ? A ARG 37 CZ 4 1 Y 1 A ARG 38 ? NH1 ? A ARG 37 NH1 5 1 Y 1 A ARG 38 ? NH2 ? A ARG 37 NH2 6 1 Y 1 A GLU 150 ? CG ? A GLU 149 CG 7 1 Y 1 A GLU 150 ? CD ? A GLU 149 CD 8 1 Y 1 A GLU 150 ? OE1 ? A GLU 149 OE1 9 1 Y 1 A GLU 150 ? OE2 ? A GLU 149 OE2 10 1 Y 1 A LYS 154 ? CD ? A LYS 153 CD 11 1 Y 1 A LYS 154 ? CE ? A LYS 153 CE 12 1 Y 1 A LYS 154 ? NZ ? A LYS 153 NZ 13 1 Y 1 A LYS 156 ? CG ? A LYS 155 CG 14 1 Y 1 A LYS 156 ? CD ? A LYS 155 CD 15 1 Y 1 A LYS 156 ? CE ? A LYS 155 CE 16 1 Y 1 A LYS 156 ? NZ ? A LYS 155 NZ 17 1 Y 1 A MET 216 ? CG ? A MET 215 CG 18 1 Y 1 A MET 216 ? SD ? A MET 215 SD 19 1 Y 1 A MET 216 ? CE ? A MET 215 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 234 ? A LYS 216 2 1 Y 1 A GLY 235 ? A GLY 217 3 1 Y 1 A GLN 236 ? A GLN 218 4 1 Y 1 A HIS 237 ? A HIS 219 5 1 Y 1 A HIS 238 ? A HIS 220 6 1 Y 1 B DA 1 ? B DA 1 7 1 Y 1 B DG 15 ? B DG 15 8 1 Y 1 B DC 16 ? B DC 16 9 1 Y 1 C DT 1 ? C DT 1 10 1 Y 1 C DG 2 ? C DG 2 11 1 Y 1 C DC 3 ? C DC 3 12 1 Y 1 C DC 16 ? C DC 16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 DA OP3 O N N 126 DA P P N N 127 DA OP1 O N N 128 DA OP2 O N N 129 DA "O5'" O N N 130 DA "C5'" C N N 131 DA "C4'" C N R 132 DA "O4'" O N N 133 DA "C3'" C N S 134 DA "O3'" O N N 135 DA "C2'" C N N 136 DA "C1'" C N R 137 DA N9 N Y N 138 DA C8 C Y N 139 DA N7 N Y N 140 DA C5 C Y N 141 DA C6 C Y N 142 DA N6 N N N 143 DA N1 N Y N 144 DA C2 C Y N 145 DA N3 N Y N 146 DA C4 C Y N 147 DA HOP3 H N N 148 DA HOP2 H N N 149 DA "H5'" H N N 150 DA "H5''" H N N 151 DA "H4'" H N N 152 DA "H3'" H N N 153 DA "HO3'" H N N 154 DA "H2'" H N N 155 DA "H2''" H N N 156 DA "H1'" H N N 157 DA H8 H N N 158 DA H61 H N N 159 DA H62 H N N 160 DA H2 H N N 161 DC OP3 O N N 162 DC P P N N 163 DC OP1 O N N 164 DC OP2 O N N 165 DC "O5'" O N N 166 DC "C5'" C N N 167 DC "C4'" C N R 168 DC "O4'" O N N 169 DC "C3'" C N S 170 DC "O3'" O N N 171 DC "C2'" C N N 172 DC "C1'" C N R 173 DC N1 N N N 174 DC C2 C N N 175 DC O2 O N N 176 DC N3 N N N 177 DC C4 C N N 178 DC N4 N N N 179 DC C5 C N N 180 DC C6 C N N 181 DC HOP3 H N N 182 DC HOP2 H N N 183 DC "H5'" H N N 184 DC "H5''" H N N 185 DC "H4'" H N N 186 DC "H3'" H N N 187 DC "HO3'" H N N 188 DC "H2'" H N N 189 DC "H2''" H N N 190 DC "H1'" H N N 191 DC H41 H N N 192 DC H42 H N N 193 DC H5 H N N 194 DC H6 H N N 195 DG OP3 O N N 196 DG P P N N 197 DG OP1 O N N 198 DG OP2 O N N 199 DG "O5'" O N N 200 DG "C5'" C N N 201 DG "C4'" C N R 202 DG "O4'" O N N 203 DG "C3'" C N S 204 DG "O3'" O N N 205 DG "C2'" C N N 206 DG "C1'" C N R 207 DG N9 N Y N 208 DG C8 C Y N 209 DG N7 N Y N 210 DG C5 C Y N 211 DG C6 C N N 212 DG O6 O N N 213 DG N1 N N N 214 DG C2 C N N 215 DG N2 N N N 216 DG N3 N N N 217 DG C4 C Y N 218 DG HOP3 H N N 219 DG HOP2 H N N 220 DG "H5'" H N N 221 DG "H5''" H N N 222 DG "H4'" H N N 223 DG "H3'" H N N 224 DG "HO3'" H N N 225 DG "H2'" H N N 226 DG "H2''" H N N 227 DG "H1'" H N N 228 DG H8 H N N 229 DG H1 H N N 230 DG H21 H N N 231 DG H22 H N N 232 DT OP3 O N N 233 DT P P N N 234 DT OP1 O N N 235 DT OP2 O N N 236 DT "O5'" O N N 237 DT "C5'" C N N 238 DT "C4'" C N R 239 DT "O4'" O N N 240 DT "C3'" C N S 241 DT "O3'" O N N 242 DT "C2'" C N N 243 DT "C1'" C N R 244 DT N1 N N N 245 DT C2 C N N 246 DT O2 O N N 247 DT N3 N N N 248 DT C4 C N N 249 DT O4 O N N 250 DT C5 C N N 251 DT C7 C N N 252 DT C6 C N N 253 DT HOP3 H N N 254 DT HOP2 H N N 255 DT "H5'" H N N 256 DT "H5''" H N N 257 DT "H4'" H N N 258 DT "H3'" H N N 259 DT "HO3'" H N N 260 DT "H2'" H N N 261 DT "H2''" H N N 262 DT "H1'" H N N 263 DT H3 H N N 264 DT H71 H N N 265 DT H72 H N N 266 DT H73 H N N 267 DT H6 H N N 268 GLN N N N N 269 GLN CA C N S 270 GLN C C N N 271 GLN O O N N 272 GLN CB C N N 273 GLN CG C N N 274 GLN CD C N N 275 GLN OE1 O N N 276 GLN NE2 N N N 277 GLN OXT O N N 278 GLN H H N N 279 GLN H2 H N N 280 GLN HA H N N 281 GLN HB2 H N N 282 GLN HB3 H N N 283 GLN HG2 H N N 284 GLN HG3 H N N 285 GLN HE21 H N N 286 GLN HE22 H N N 287 GLN HXT H N N 288 GLU N N N N 289 GLU CA C N S 290 GLU C C N N 291 GLU O O N N 292 GLU CB C N N 293 GLU CG C N N 294 GLU CD C N N 295 GLU OE1 O N N 296 GLU OE2 O N N 297 GLU OXT O N N 298 GLU H H N N 299 GLU H2 H N N 300 GLU HA H N N 301 GLU HB2 H N N 302 GLU HB3 H N N 303 GLU HG2 H N N 304 GLU HG3 H N N 305 GLU HE2 H N N 306 GLU HXT H N N 307 GLY N N N N 308 GLY CA C N N 309 GLY C C N N 310 GLY O O N N 311 GLY OXT O N N 312 GLY H H N N 313 GLY H2 H N N 314 GLY HA2 H N N 315 GLY HA3 H N N 316 GLY HXT H N N 317 HIS N N N N 318 HIS CA C N S 319 HIS C C N N 320 HIS O O N N 321 HIS CB C N N 322 HIS CG C Y N 323 HIS ND1 N Y N 324 HIS CD2 C Y N 325 HIS CE1 C Y N 326 HIS NE2 N Y N 327 HIS OXT O N N 328 HIS H H N N 329 HIS H2 H N N 330 HIS HA H N N 331 HIS HB2 H N N 332 HIS HB3 H N N 333 HIS HD1 H N N 334 HIS HD2 H N N 335 HIS HE1 H N N 336 HIS HE2 H N N 337 HIS HXT H N N 338 HOH O O N N 339 HOH H1 H N N 340 HOH H2 H N N 341 ILE N N N N 342 ILE CA C N S 343 ILE C C N N 344 ILE O O N N 345 ILE CB C N S 346 ILE CG1 C N N 347 ILE CG2 C N N 348 ILE CD1 C N N 349 ILE OXT O N N 350 ILE H H N N 351 ILE H2 H N N 352 ILE HA H N N 353 ILE HB H N N 354 ILE HG12 H N N 355 ILE HG13 H N N 356 ILE HG21 H N N 357 ILE HG22 H N N 358 ILE HG23 H N N 359 ILE HD11 H N N 360 ILE HD12 H N N 361 ILE HD13 H N N 362 ILE HXT H N N 363 LEU N N N N 364 LEU CA C N S 365 LEU C C N N 366 LEU O O N N 367 LEU CB C N N 368 LEU CG C N N 369 LEU CD1 C N N 370 LEU CD2 C N N 371 LEU OXT O N N 372 LEU H H N N 373 LEU H2 H N N 374 LEU HA H N N 375 LEU HB2 H N N 376 LEU HB3 H N N 377 LEU HG H N N 378 LEU HD11 H N N 379 LEU HD12 H N N 380 LEU HD13 H N N 381 LEU HD21 H N N 382 LEU HD22 H N N 383 LEU HD23 H N N 384 LEU HXT H N N 385 LYS N N N N 386 LYS CA C N S 387 LYS C C N N 388 LYS O O N N 389 LYS CB C N N 390 LYS CG C N N 391 LYS CD C N N 392 LYS CE C N N 393 LYS NZ N N N 394 LYS OXT O N N 395 LYS H H N N 396 LYS H2 H N N 397 LYS HA H N N 398 LYS HB2 H N N 399 LYS HB3 H N N 400 LYS HG2 H N N 401 LYS HG3 H N N 402 LYS HD2 H N N 403 LYS HD3 H N N 404 LYS HE2 H N N 405 LYS HE3 H N N 406 LYS HZ1 H N N 407 LYS HZ2 H N N 408 LYS HZ3 H N N 409 LYS HXT H N N 410 MET N N N N 411 MET CA C N S 412 MET C C N N 413 MET O O N N 414 MET CB C N N 415 MET CG C N N 416 MET SD S N N 417 MET CE C N N 418 MET OXT O N N 419 MET H H N N 420 MET H2 H N N 421 MET HA H N N 422 MET HB2 H N N 423 MET HB3 H N N 424 MET HG2 H N N 425 MET HG3 H N N 426 MET HE1 H N N 427 MET HE2 H N N 428 MET HE3 H N N 429 MET HXT H N N 430 PHE N N N N 431 PHE CA C N S 432 PHE C C N N 433 PHE O O N N 434 PHE CB C N N 435 PHE CG C Y N 436 PHE CD1 C Y N 437 PHE CD2 C Y N 438 PHE CE1 C Y N 439 PHE CE2 C Y N 440 PHE CZ C Y N 441 PHE OXT O N N 442 PHE H H N N 443 PHE H2 H N N 444 PHE HA H N N 445 PHE HB2 H N N 446 PHE HB3 H N N 447 PHE HD1 H N N 448 PHE HD2 H N N 449 PHE HE1 H N N 450 PHE HE2 H N N 451 PHE HZ H N N 452 PHE HXT H N N 453 PRO N N N N 454 PRO CA C N S 455 PRO C C N N 456 PRO O O N N 457 PRO CB C N N 458 PRO CG C N N 459 PRO CD C N N 460 PRO OXT O N N 461 PRO H H N N 462 PRO HA H N N 463 PRO HB2 H N N 464 PRO HB3 H N N 465 PRO HG2 H N N 466 PRO HG3 H N N 467 PRO HD2 H N N 468 PRO HD3 H N N 469 PRO HXT H N N 470 SER N N N N 471 SER CA C N S 472 SER C C N N 473 SER O O N N 474 SER CB C N N 475 SER OG O N N 476 SER OXT O N N 477 SER H H N N 478 SER H2 H N N 479 SER HA H N N 480 SER HB2 H N N 481 SER HB3 H N N 482 SER HG H N N 483 SER HXT H N N 484 THR N N N N 485 THR CA C N S 486 THR C C N N 487 THR O O N N 488 THR CB C N R 489 THR OG1 O N N 490 THR CG2 C N N 491 THR OXT O N N 492 THR H H N N 493 THR H2 H N N 494 THR HA H N N 495 THR HB H N N 496 THR HG1 H N N 497 THR HG21 H N N 498 THR HG22 H N N 499 THR HG23 H N N 500 THR HXT H N N 501 TRP N N N N 502 TRP CA C N S 503 TRP C C N N 504 TRP O O N N 505 TRP CB C N N 506 TRP CG C Y N 507 TRP CD1 C Y N 508 TRP CD2 C Y N 509 TRP NE1 N Y N 510 TRP CE2 C Y N 511 TRP CE3 C Y N 512 TRP CZ2 C Y N 513 TRP CZ3 C Y N 514 TRP CH2 C Y N 515 TRP OXT O N N 516 TRP H H N N 517 TRP H2 H N N 518 TRP HA H N N 519 TRP HB2 H N N 520 TRP HB3 H N N 521 TRP HD1 H N N 522 TRP HE1 H N N 523 TRP HE3 H N N 524 TRP HZ2 H N N 525 TRP HZ3 H N N 526 TRP HH2 H N N 527 TRP HXT H N N 528 TYR N N N N 529 TYR CA C N S 530 TYR C C N N 531 TYR O O N N 532 TYR CB C N N 533 TYR CG C Y N 534 TYR CD1 C Y N 535 TYR CD2 C Y N 536 TYR CE1 C Y N 537 TYR CE2 C Y N 538 TYR CZ C Y N 539 TYR OH O N N 540 TYR OXT O N N 541 TYR H H N N 542 TYR H2 H N N 543 TYR HA H N N 544 TYR HB2 H N N 545 TYR HB3 H N N 546 TYR HD1 H N N 547 TYR HD2 H N N 548 TYR HE1 H N N 549 TYR HE2 H N N 550 TYR HH H N N 551 TYR HXT H N N 552 VAL N N N N 553 VAL CA C N S 554 VAL C C N N 555 VAL O O N N 556 VAL CB C N N 557 VAL CG1 C N N 558 VAL CG2 C N N 559 VAL OXT O N N 560 VAL H H N N 561 VAL H2 H N N 562 VAL HA H N N 563 VAL HB H N N 564 VAL HG11 H N N 565 VAL HG12 H N N 566 VAL HG13 H N N 567 VAL HG21 H N N 568 VAL HG22 H N N 569 VAL HG23 H N N 570 VAL HXT H N N 571 ZN ZN ZN N N 572 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 DA OP3 P sing N N 123 DA OP3 HOP3 sing N N 124 DA P OP1 doub N N 125 DA P OP2 sing N N 126 DA P "O5'" sing N N 127 DA OP2 HOP2 sing N N 128 DA "O5'" "C5'" sing N N 129 DA "C5'" "C4'" sing N N 130 DA "C5'" "H5'" sing N N 131 DA "C5'" "H5''" sing N N 132 DA "C4'" "O4'" sing N N 133 DA "C4'" "C3'" sing N N 134 DA "C4'" "H4'" sing N N 135 DA "O4'" "C1'" sing N N 136 DA "C3'" "O3'" sing N N 137 DA "C3'" "C2'" sing N N 138 DA "C3'" "H3'" sing N N 139 DA "O3'" "HO3'" sing N N 140 DA "C2'" "C1'" sing N N 141 DA "C2'" "H2'" sing N N 142 DA "C2'" "H2''" sing N N 143 DA "C1'" N9 sing N N 144 DA "C1'" "H1'" sing N N 145 DA N9 C8 sing Y N 146 DA N9 C4 sing Y N 147 DA C8 N7 doub Y N 148 DA C8 H8 sing N N 149 DA N7 C5 sing Y N 150 DA C5 C6 sing Y N 151 DA C5 C4 doub Y N 152 DA C6 N6 sing N N 153 DA C6 N1 doub Y N 154 DA N6 H61 sing N N 155 DA N6 H62 sing N N 156 DA N1 C2 sing Y N 157 DA C2 N3 doub Y N 158 DA C2 H2 sing N N 159 DA N3 C4 sing Y N 160 DC OP3 P sing N N 161 DC OP3 HOP3 sing N N 162 DC P OP1 doub N N 163 DC P OP2 sing N N 164 DC P "O5'" sing N N 165 DC OP2 HOP2 sing N N 166 DC "O5'" "C5'" sing N N 167 DC "C5'" "C4'" sing N N 168 DC "C5'" "H5'" sing N N 169 DC "C5'" "H5''" sing N N 170 DC "C4'" "O4'" sing N N 171 DC "C4'" "C3'" sing N N 172 DC "C4'" "H4'" sing N N 173 DC "O4'" "C1'" sing N N 174 DC "C3'" "O3'" sing N N 175 DC "C3'" "C2'" sing N N 176 DC "C3'" "H3'" sing N N 177 DC "O3'" "HO3'" sing N N 178 DC "C2'" "C1'" sing N N 179 DC "C2'" "H2'" sing N N 180 DC "C2'" "H2''" sing N N 181 DC "C1'" N1 sing N N 182 DC "C1'" "H1'" sing N N 183 DC N1 C2 sing N N 184 DC N1 C6 sing N N 185 DC C2 O2 doub N N 186 DC C2 N3 sing N N 187 DC N3 C4 doub N N 188 DC C4 N4 sing N N 189 DC C4 C5 sing N N 190 DC N4 H41 sing N N 191 DC N4 H42 sing N N 192 DC C5 C6 doub N N 193 DC C5 H5 sing N N 194 DC C6 H6 sing N N 195 DG OP3 P sing N N 196 DG OP3 HOP3 sing N N 197 DG P OP1 doub N N 198 DG P OP2 sing N N 199 DG P "O5'" sing N N 200 DG OP2 HOP2 sing N N 201 DG "O5'" "C5'" sing N N 202 DG "C5'" "C4'" sing N N 203 DG "C5'" "H5'" sing N N 204 DG "C5'" "H5''" sing N N 205 DG "C4'" "O4'" sing N N 206 DG "C4'" "C3'" sing N N 207 DG "C4'" "H4'" sing N N 208 DG "O4'" "C1'" sing N N 209 DG "C3'" "O3'" sing N N 210 DG "C3'" "C2'" sing N N 211 DG "C3'" "H3'" sing N N 212 DG "O3'" "HO3'" sing N N 213 DG "C2'" "C1'" sing N N 214 DG "C2'" "H2'" sing N N 215 DG "C2'" "H2''" sing N N 216 DG "C1'" N9 sing N N 217 DG "C1'" "H1'" sing N N 218 DG N9 C8 sing Y N 219 DG N9 C4 sing Y N 220 DG C8 N7 doub Y N 221 DG C8 H8 sing N N 222 DG N7 C5 sing Y N 223 DG C5 C6 sing N N 224 DG C5 C4 doub Y N 225 DG C6 O6 doub N N 226 DG C6 N1 sing N N 227 DG N1 C2 sing N N 228 DG N1 H1 sing N N 229 DG C2 N2 sing N N 230 DG C2 N3 doub N N 231 DG N2 H21 sing N N 232 DG N2 H22 sing N N 233 DG N3 C4 sing N N 234 DT OP3 P sing N N 235 DT OP3 HOP3 sing N N 236 DT P OP1 doub N N 237 DT P OP2 sing N N 238 DT P "O5'" sing N N 239 DT OP2 HOP2 sing N N 240 DT "O5'" "C5'" sing N N 241 DT "C5'" "C4'" sing N N 242 DT "C5'" "H5'" sing N N 243 DT "C5'" "H5''" sing N N 244 DT "C4'" "O4'" sing N N 245 DT "C4'" "C3'" sing N N 246 DT "C4'" "H4'" sing N N 247 DT "O4'" "C1'" sing N N 248 DT "C3'" "O3'" sing N N 249 DT "C3'" "C2'" sing N N 250 DT "C3'" "H3'" sing N N 251 DT "O3'" "HO3'" sing N N 252 DT "C2'" "C1'" sing N N 253 DT "C2'" "H2'" sing N N 254 DT "C2'" "H2''" sing N N 255 DT "C1'" N1 sing N N 256 DT "C1'" "H1'" sing N N 257 DT N1 C2 sing N N 258 DT N1 C6 sing N N 259 DT C2 O2 doub N N 260 DT C2 N3 sing N N 261 DT N3 C4 sing N N 262 DT N3 H3 sing N N 263 DT C4 O4 doub N N 264 DT C4 C5 sing N N 265 DT C5 C7 sing N N 266 DT C5 C6 doub N N 267 DT C7 H71 sing N N 268 DT C7 H72 sing N N 269 DT C7 H73 sing N N 270 DT C6 H6 sing N N 271 GLN N CA sing N N 272 GLN N H sing N N 273 GLN N H2 sing N N 274 GLN CA C sing N N 275 GLN CA CB sing N N 276 GLN CA HA sing N N 277 GLN C O doub N N 278 GLN C OXT sing N N 279 GLN CB CG sing N N 280 GLN CB HB2 sing N N 281 GLN CB HB3 sing N N 282 GLN CG CD sing N N 283 GLN CG HG2 sing N N 284 GLN CG HG3 sing N N 285 GLN CD OE1 doub N N 286 GLN CD NE2 sing N N 287 GLN NE2 HE21 sing N N 288 GLN NE2 HE22 sing N N 289 GLN OXT HXT sing N N 290 GLU N CA sing N N 291 GLU N H sing N N 292 GLU N H2 sing N N 293 GLU CA C sing N N 294 GLU CA CB sing N N 295 GLU CA HA sing N N 296 GLU C O doub N N 297 GLU C OXT sing N N 298 GLU CB CG sing N N 299 GLU CB HB2 sing N N 300 GLU CB HB3 sing N N 301 GLU CG CD sing N N 302 GLU CG HG2 sing N N 303 GLU CG HG3 sing N N 304 GLU CD OE1 doub N N 305 GLU CD OE2 sing N N 306 GLU OE2 HE2 sing N N 307 GLU OXT HXT sing N N 308 GLY N CA sing N N 309 GLY N H sing N N 310 GLY N H2 sing N N 311 GLY CA C sing N N 312 GLY CA HA2 sing N N 313 GLY CA HA3 sing N N 314 GLY C O doub N N 315 GLY C OXT sing N N 316 GLY OXT HXT sing N N 317 HIS N CA sing N N 318 HIS N H sing N N 319 HIS N H2 sing N N 320 HIS CA C sing N N 321 HIS CA CB sing N N 322 HIS CA HA sing N N 323 HIS C O doub N N 324 HIS C OXT sing N N 325 HIS CB CG sing N N 326 HIS CB HB2 sing N N 327 HIS CB HB3 sing N N 328 HIS CG ND1 sing Y N 329 HIS CG CD2 doub Y N 330 HIS ND1 CE1 doub Y N 331 HIS ND1 HD1 sing N N 332 HIS CD2 NE2 sing Y N 333 HIS CD2 HD2 sing N N 334 HIS CE1 NE2 sing Y N 335 HIS CE1 HE1 sing N N 336 HIS NE2 HE2 sing N N 337 HIS OXT HXT sing N N 338 HOH O H1 sing N N 339 HOH O H2 sing N N 340 ILE N CA sing N N 341 ILE N H sing N N 342 ILE N H2 sing N N 343 ILE CA C sing N N 344 ILE CA CB sing N N 345 ILE CA HA sing N N 346 ILE C O doub N N 347 ILE C OXT sing N N 348 ILE CB CG1 sing N N 349 ILE CB CG2 sing N N 350 ILE CB HB sing N N 351 ILE CG1 CD1 sing N N 352 ILE CG1 HG12 sing N N 353 ILE CG1 HG13 sing N N 354 ILE CG2 HG21 sing N N 355 ILE CG2 HG22 sing N N 356 ILE CG2 HG23 sing N N 357 ILE CD1 HD11 sing N N 358 ILE CD1 HD12 sing N N 359 ILE CD1 HD13 sing N N 360 ILE OXT HXT sing N N 361 LEU N CA sing N N 362 LEU N H sing N N 363 LEU N H2 sing N N 364 LEU CA C sing N N 365 LEU CA CB sing N N 366 LEU CA HA sing N N 367 LEU C O doub N N 368 LEU C OXT sing N N 369 LEU CB CG sing N N 370 LEU CB HB2 sing N N 371 LEU CB HB3 sing N N 372 LEU CG CD1 sing N N 373 LEU CG CD2 sing N N 374 LEU CG HG sing N N 375 LEU CD1 HD11 sing N N 376 LEU CD1 HD12 sing N N 377 LEU CD1 HD13 sing N N 378 LEU CD2 HD21 sing N N 379 LEU CD2 HD22 sing N N 380 LEU CD2 HD23 sing N N 381 LEU OXT HXT sing N N 382 LYS N CA sing N N 383 LYS N H sing N N 384 LYS N H2 sing N N 385 LYS CA C sing N N 386 LYS CA CB sing N N 387 LYS CA HA sing N N 388 LYS C O doub N N 389 LYS C OXT sing N N 390 LYS CB CG sing N N 391 LYS CB HB2 sing N N 392 LYS CB HB3 sing N N 393 LYS CG CD sing N N 394 LYS CG HG2 sing N N 395 LYS CG HG3 sing N N 396 LYS CD CE sing N N 397 LYS CD HD2 sing N N 398 LYS CD HD3 sing N N 399 LYS CE NZ sing N N 400 LYS CE HE2 sing N N 401 LYS CE HE3 sing N N 402 LYS NZ HZ1 sing N N 403 LYS NZ HZ2 sing N N 404 LYS NZ HZ3 sing N N 405 LYS OXT HXT sing N N 406 MET N CA sing N N 407 MET N H sing N N 408 MET N H2 sing N N 409 MET CA C sing N N 410 MET CA CB sing N N 411 MET CA HA sing N N 412 MET C O doub N N 413 MET C OXT sing N N 414 MET CB CG sing N N 415 MET CB HB2 sing N N 416 MET CB HB3 sing N N 417 MET CG SD sing N N 418 MET CG HG2 sing N N 419 MET CG HG3 sing N N 420 MET SD CE sing N N 421 MET CE HE1 sing N N 422 MET CE HE2 sing N N 423 MET CE HE3 sing N N 424 MET OXT HXT sing N N 425 PHE N CA sing N N 426 PHE N H sing N N 427 PHE N H2 sing N N 428 PHE CA C sing N N 429 PHE CA CB sing N N 430 PHE CA HA sing N N 431 PHE C O doub N N 432 PHE C OXT sing N N 433 PHE CB CG sing N N 434 PHE CB HB2 sing N N 435 PHE CB HB3 sing N N 436 PHE CG CD1 doub Y N 437 PHE CG CD2 sing Y N 438 PHE CD1 CE1 sing Y N 439 PHE CD1 HD1 sing N N 440 PHE CD2 CE2 doub Y N 441 PHE CD2 HD2 sing N N 442 PHE CE1 CZ doub Y N 443 PHE CE1 HE1 sing N N 444 PHE CE2 CZ sing Y N 445 PHE CE2 HE2 sing N N 446 PHE CZ HZ sing N N 447 PHE OXT HXT sing N N 448 PRO N CA sing N N 449 PRO N CD sing N N 450 PRO N H sing N N 451 PRO CA C sing N N 452 PRO CA CB sing N N 453 PRO CA HA sing N N 454 PRO C O doub N N 455 PRO C OXT sing N N 456 PRO CB CG sing N N 457 PRO CB HB2 sing N N 458 PRO CB HB3 sing N N 459 PRO CG CD sing N N 460 PRO CG HG2 sing N N 461 PRO CG HG3 sing N N 462 PRO CD HD2 sing N N 463 PRO CD HD3 sing N N 464 PRO OXT HXT sing N N 465 SER N CA sing N N 466 SER N H sing N N 467 SER N H2 sing N N 468 SER CA C sing N N 469 SER CA CB sing N N 470 SER CA HA sing N N 471 SER C O doub N N 472 SER C OXT sing N N 473 SER CB OG sing N N 474 SER CB HB2 sing N N 475 SER CB HB3 sing N N 476 SER OG HG sing N N 477 SER OXT HXT sing N N 478 THR N CA sing N N 479 THR N H sing N N 480 THR N H2 sing N N 481 THR CA C sing N N 482 THR CA CB sing N N 483 THR CA HA sing N N 484 THR C O doub N N 485 THR C OXT sing N N 486 THR CB OG1 sing N N 487 THR CB CG2 sing N N 488 THR CB HB sing N N 489 THR OG1 HG1 sing N N 490 THR CG2 HG21 sing N N 491 THR CG2 HG22 sing N N 492 THR CG2 HG23 sing N N 493 THR OXT HXT sing N N 494 TRP N CA sing N N 495 TRP N H sing N N 496 TRP N H2 sing N N 497 TRP CA C sing N N 498 TRP CA CB sing N N 499 TRP CA HA sing N N 500 TRP C O doub N N 501 TRP C OXT sing N N 502 TRP CB CG sing N N 503 TRP CB HB2 sing N N 504 TRP CB HB3 sing N N 505 TRP CG CD1 doub Y N 506 TRP CG CD2 sing Y N 507 TRP CD1 NE1 sing Y N 508 TRP CD1 HD1 sing N N 509 TRP CD2 CE2 doub Y N 510 TRP CD2 CE3 sing Y N 511 TRP NE1 CE2 sing Y N 512 TRP NE1 HE1 sing N N 513 TRP CE2 CZ2 sing Y N 514 TRP CE3 CZ3 doub Y N 515 TRP CE3 HE3 sing N N 516 TRP CZ2 CH2 doub Y N 517 TRP CZ2 HZ2 sing N N 518 TRP CZ3 CH2 sing Y N 519 TRP CZ3 HZ3 sing N N 520 TRP CH2 HH2 sing N N 521 TRP OXT HXT sing N N 522 TYR N CA sing N N 523 TYR N H sing N N 524 TYR N H2 sing N N 525 TYR CA C sing N N 526 TYR CA CB sing N N 527 TYR CA HA sing N N 528 TYR C O doub N N 529 TYR C OXT sing N N 530 TYR CB CG sing N N 531 TYR CB HB2 sing N N 532 TYR CB HB3 sing N N 533 TYR CG CD1 doub Y N 534 TYR CG CD2 sing Y N 535 TYR CD1 CE1 sing Y N 536 TYR CD1 HD1 sing N N 537 TYR CD2 CE2 doub Y N 538 TYR CD2 HD2 sing N N 539 TYR CE1 CZ doub Y N 540 TYR CE1 HE1 sing N N 541 TYR CE2 CZ sing Y N 542 TYR CE2 HE2 sing N N 543 TYR CZ OH sing N N 544 TYR OH HH sing N N 545 TYR OXT HXT sing N N 546 VAL N CA sing N N 547 VAL N H sing N N 548 VAL N H2 sing N N 549 VAL CA C sing N N 550 VAL CA CB sing N N 551 VAL CA HA sing N N 552 VAL C O doub N N 553 VAL C OXT sing N N 554 VAL CB CG1 sing N N 555 VAL CB CG2 sing N N 556 VAL CB HB sing N N 557 VAL CG1 HG11 sing N N 558 VAL CG1 HG12 sing N N 559 VAL CG1 HG13 sing N N 560 VAL CG2 HG21 sing N N 561 VAL CG2 HG22 sing N N 562 VAL CG2 HG23 sing N N 563 VAL OXT HXT sing N N 564 # _ndb_struct_conf_na.entry_id 3GPU _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 15 1_555 -0.335 0.020 0.362 -1.772 -14.622 4.979 1 B_DG3:DC15_C B 3 ? C 15 ? 19 1 1 B DT 4 1_555 C DA 14 1_555 -0.456 -0.030 0.261 0.562 -8.509 3.358 2 B_DT4:DA14_C B 4 ? C 14 ? 20 1 1 B DA 5 1_555 C DT 13 1_555 0.241 -0.147 0.135 11.524 -12.121 -1.133 3 B_DA5:DT13_C B 5 ? C 13 ? 20 1 1 B DG 6 1_555 C DC 12 1_555 -0.136 -0.238 -0.102 -1.834 -16.352 -0.067 4 B_DG6:DC12_C B 6 ? C 12 ? 19 1 1 B DA 7 1_555 C DT 11 1_555 0.041 -0.088 -0.109 -9.778 -14.926 -0.476 5 B_DA7:DT11_C B 7 ? C 11 ? 20 1 1 B DC 8 1_555 C DG 10 1_555 0.131 -0.022 0.255 -11.164 -4.903 0.912 6 B_DC8:DG10_C B 8 ? C 10 ? 19 1 1 B DT 9 1_555 C DA 9 1_555 0.122 -0.155 -0.243 7.331 0.433 1.995 7 B_DT9:DA9_C B 9 ? C 9 ? 20 1 1 B DC 10 1_555 C 8OG 8 1_555 0.397 0.111 0.824 -32.890 2.129 1.992 8 B_DC10:8OG8_C B 10 ? C 8 ? 19 1 1 B DG 11 1_555 C DC 7 1_555 -0.255 -0.146 0.074 5.496 7.323 -0.905 9 B_DG11:DC7_C B 11 ? C 7 ? 19 1 1 B DG 12 1_555 C DC 6 1_555 -0.174 -0.102 0.170 13.797 -10.183 -1.117 10 B_DG12:DC6_C B 12 ? C 6 ? 19 1 1 B DA 13 1_555 C DT 5 1_555 0.324 -0.171 -0.019 6.795 -15.364 -1.853 11 B_DA13:DT5_C B 13 ? C 5 ? 20 1 1 B DC 14 1_555 C DG 4 1_555 0.894 -0.278 -0.162 -0.020 -9.285 -0.035 12 B_DC14:DG4_C B 14 ? C 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 15 1_555 B DT 4 1_555 C DA 14 1_555 0.362 -0.270 3.283 0.360 -2.396 30.320 -0.030 -0.617 3.298 -4.573 -0.688 30.414 1 BB_DG3DT4:DA14DC15_CC B 3 ? C 15 ? B 4 ? C 14 ? 1 B DT 4 1_555 C DA 14 1_555 B DA 5 1_555 C DT 13 1_555 -0.787 0.088 3.055 0.371 0.149 36.418 0.121 1.308 3.048 0.239 -0.594 36.420 2 BB_DT4DA5:DT13DA14_CC B 4 ? C 14 ? B 5 ? C 13 ? 1 B DA 5 1_555 C DT 13 1_555 B DG 6 1_555 C DC 12 1_555 -0.035 -0.595 3.607 -1.477 4.772 35.476 -1.715 -0.175 3.498 7.783 2.410 35.814 3 BB_DA5DG6:DC12DT13_CC B 5 ? C 13 ? B 6 ? C 12 ? 1 B DG 6 1_555 C DC 12 1_555 B DA 7 1_555 C DT 11 1_555 -0.363 -0.233 3.336 -2.100 3.899 39.482 -0.805 0.285 3.313 5.749 3.096 39.720 4 BB_DG6DA7:DT11DC12_CC B 6 ? C 12 ? B 7 ? C 11 ? 1 B DA 7 1_555 C DT 11 1_555 B DC 8 1_555 C DG 10 1_555 0.647 -0.370 3.315 -2.465 0.320 33.194 -0.700 -1.544 3.256 0.558 4.307 33.284 5 BB_DA7DC8:DG10DT11_CC B 7 ? C 11 ? B 8 ? C 10 ? 1 B DC 8 1_555 C DG 10 1_555 B DT 9 1_555 C DA 9 1_555 -0.408 0.374 2.941 5.536 10.621 24.758 -1.597 2.102 2.718 23.121 -12.053 27.462 6 BB_DC8DT9:DA9DG10_CC B 8 ? C 10 ? B 9 ? C 9 ? 1 B DT 9 1_555 C DA 9 1_555 B DC 10 1_555 C 8OG 8 1_555 0.606 1.062 5.577 -5.580 43.220 22.842 -5.192 -1.568 3.523 63.125 8.149 48.943 7 BB_DT9DC10:8OG8DA9_CC B 9 ? C 9 ? B 10 ? C 8 ? 1 B DC 10 1_555 C 8OG 8 1_555 B DG 11 1_555 C DC 7 1_555 0.231 1.702 2.740 2.666 4.313 22.689 2.903 0.245 3.014 10.790 -6.669 23.241 8 BB_DC10DG11:DC78OG8_CC B 10 ? C 8 ? B 11 ? C 7 ? 1 B DG 11 1_555 C DC 7 1_555 B DG 12 1_555 C DC 6 1_555 -1.100 0.894 3.249 -2.708 7.479 35.215 0.347 1.380 3.434 12.171 4.407 36.074 9 BB_DG11DG12:DC6DC7_CC B 11 ? C 7 ? B 12 ? C 6 ? 1 B DG 12 1_555 C DC 6 1_555 B DA 13 1_555 C DT 5 1_555 -0.023 -0.130 3.394 -0.417 1.401 39.241 -0.366 -0.018 3.388 2.086 0.620 39.268 10 BB_DG12DA13:DT5DC6_CC B 12 ? C 6 ? B 13 ? C 5 ? 1 B DA 13 1_555 C DT 5 1_555 B DC 14 1_555 C DG 4 1_555 0.389 -0.491 3.459 -0.020 1.714 36.110 -1.046 -0.629 3.432 2.764 0.032 36.149 11 BB_DA13DC14:DG4DT5_CC B 13 ? C 5 ? B 14 ? C 4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2F5O _pdbx_initial_refinement_model.details 'pdb entry 2F5O, protein part only' #