HEADER VIRAL PROTEIN 24-MAR-09 3GQE TITLE CRYSTAL STRUCTURE OF MACRO DOMAIN OF VENEZUELAN EQUINE ENCEPHALITIS TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1330-1489; COMPND 5 SYNONYM: NSP3, NON-STRUCTURAL PROTEIN 3', NSP3'; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VENEZUELAN EQUINE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 36385; SOURCE 4 STRAIN: P676; SOURCE 5 GENE: NSP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: GATEWAY; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS MACRO DOMAIN, X DOMAIN, VENEZUELAN EQUINE ENCEPHALITIS VIRUS, KEYWDS 2 ALPHAVIRUS, VIRUS, VIZIER. VIRAL ENZYMES INVOLVED IN REPLICATION, KEYWDS 3 ATP-BINDING, CELL MEMBRANE, CELL PROJECTION, ENDOSOME, HELICASE, KEYWDS 4 HYDROLASE, LIPOPROTEIN, LYSOSOME, MEMBRANE, METHYLTRANSFERASE, MRNA KEYWDS 5 CAPPING, MRNA PROCESSING, MULTIFUNCTIONAL ENZYME, NUCLEOTIDE- KEYWDS 6 BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PALMITATE, PHOSPHOPROTEIN, KEYWDS 7 PROTEASE, RNA REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, KEYWDS 8 THIOL PROTEASE, TRANSFERASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.JAMAL,H.MALET,B.COUTARD,B.CANARD REVDAT 4 06-NOV-24 3GQE 1 REMARK REVDAT 3 06-SEP-23 3GQE 1 REMARK SEQADV REVDAT 2 13-JUL-11 3GQE 1 VERSN REVDAT 1 21-JUL-09 3GQE 0 JRNL AUTH H.MALET,B.COUTARD,S.JAMAL,H.DUTARTRE,N.PAPAGEORGIOU, JRNL AUTH 2 M.NEUVONEN,T.AHOLA,N.FORRESTER,E.A.GOULD,D.LAFITTE,F.FERRON, JRNL AUTH 3 J.LESCAR,A.E.GORBALENYA,X.DE LAMBALLERIE,B.CANARD JRNL TITL THE CRYSTAL STRUCTURES OF CHIKUNGUNYA AND VENEZUELAN EQUINE JRNL TITL 2 ENCEPHALITIS VIRUS NSP3 MACRO DOMAINS DEFINE A CONSERVED JRNL TITL 3 ADENOSINE BINDING POCKET JRNL REF J.VIROL. V. 83 6534 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19386706 JRNL DOI 10.1128/JVI.00189-09 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1140 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2425 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3346 ; 1.348 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;40.028 ;25.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;18.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1866 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 0.549 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2575 ; 1.007 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 856 ; 1.773 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 771 ; 2.940 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5068 13.1838 4.5793 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1142 REMARK 3 T33: 0.0639 T12: 0.0444 REMARK 3 T13: 0.0931 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 4.0117 L22: 6.4024 REMARK 3 L33: 3.2964 L12: 2.4337 REMARK 3 L13: -0.2872 L23: -0.3025 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.0080 S13: -0.1724 REMARK 3 S21: -0.4190 S22: -0.2878 S23: -0.2036 REMARK 3 S31: 0.4314 S32: 0.1497 S33: 0.3246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 66.0593 29.6807 7.9733 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.1516 REMARK 3 T33: 0.3411 T12: -0.0508 REMARK 3 T13: -0.0065 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 7.7953 L22: 2.5668 REMARK 3 L33: 0.8334 L12: 1.5166 REMARK 3 L13: -1.2000 L23: 0.4632 REMARK 3 S TENSOR REMARK 3 S11: 0.0790 S12: 0.0677 S13: 0.5764 REMARK 3 S21: -0.0057 S22: 0.0246 S23: -0.5127 REMARK 3 S31: -0.2457 S32: 0.0615 S33: -0.1036 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 54.4265 21.5883 8.8367 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0758 REMARK 3 T33: 0.0701 T12: -0.0080 REMARK 3 T13: 0.0382 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.5802 L22: 2.1098 REMARK 3 L33: 3.3084 L12: -0.1450 REMARK 3 L13: -0.7398 L23: 0.7676 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.0088 S13: 0.1581 REMARK 3 S21: -0.1772 S22: -0.0380 S23: 0.0623 REMARK 3 S31: -0.0570 S32: -0.0508 S33: 0.0590 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6596 7.0860 16.4748 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.1227 REMARK 3 T33: 0.0821 T12: 0.0124 REMARK 3 T13: 0.0630 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 9.6476 L22: 8.0808 REMARK 3 L33: 5.9354 L12: 3.0029 REMARK 3 L13: 2.9721 L23: 3.4278 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: 0.0574 S13: -0.0124 REMARK 3 S21: -0.0429 S22: -0.0520 S23: -0.1444 REMARK 3 S31: -0.0426 S32: 0.1197 S33: 0.1564 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3738 11.6440 8.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.1419 REMARK 3 T33: 0.2676 T12: -0.0015 REMARK 3 T13: -0.0263 T23: 0.0904 REMARK 3 L TENSOR REMARK 3 L11: 1.3838 L22: 1.9639 REMARK 3 L33: 4.4534 L12: -1.1133 REMARK 3 L13: -0.4618 L23: 0.5590 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: -0.1197 S13: -0.4240 REMARK 3 S21: -0.1729 S22: 0.1238 S23: 0.0358 REMARK 3 S31: 0.2007 S32: -0.1162 S33: -0.2014 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9032 7.7085 0.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.1807 REMARK 3 T33: 0.2949 T12: -0.0867 REMARK 3 T13: -0.1850 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 7.0338 L22: 5.8594 REMARK 3 L33: 3.5388 L12: -3.2136 REMARK 3 L13: -2.3154 L23: 2.9598 REMARK 3 S TENSOR REMARK 3 S11: 0.2690 S12: 0.4267 S13: -0.8884 REMARK 3 S21: -0.4955 S22: -0.2233 S23: 0.6085 REMARK 3 S31: 0.3689 S32: -0.5506 S33: -0.0457 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6892 17.4786 12.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.1847 REMARK 3 T33: 0.1333 T12: 0.0034 REMARK 3 T13: 0.0043 T23: 0.1447 REMARK 3 L TENSOR REMARK 3 L11: 3.2557 L22: 2.9370 REMARK 3 L33: 2.5944 L12: -1.4190 REMARK 3 L13: 0.7038 L23: -0.7497 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: -0.2875 S13: -0.3270 REMARK 3 S21: -0.0381 S22: 0.2224 S23: 0.2065 REMARK 3 S31: 0.0867 S32: -0.2380 S33: -0.0795 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 152 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8104 20.8650 27.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.4454 REMARK 3 T33: 0.1630 T12: 0.0106 REMARK 3 T13: -0.0144 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 1.6526 L22: 9.1104 REMARK 3 L33: 6.3723 L12: -0.3188 REMARK 3 L13: -3.2125 L23: -0.3499 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.0835 S13: -0.1062 REMARK 3 S21: 0.7619 S22: -0.1322 S23: 0.4042 REMARK 3 S31: -0.1085 S32: -0.2391 S33: 0.1169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3GQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15851 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.269 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26400 REMARK 200 R SYM FOR SHELL (I) : 0.26400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 11MM SODIUM ACETATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.24500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.24500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 64.80500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 64.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 21.24500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 64.80500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 64.80500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.24500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 MET B -1 REMARK 465 LYS B 0 REMARK 465 ARG B 159 REMARK 465 GLU B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 26 CD CE NZ REMARK 480 LEU A 47 CD1 CD2 REMARK 480 LYS A 118 CD CE NZ REMARK 480 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 146 CE NZ REMARK 480 LYS A 147 CD CE NZ REMARK 480 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 54 CG CD CE NZ REMARK 480 LYS B 59 CE NZ REMARK 480 LYS B 94 CB CG CD CE NZ REMARK 480 LYS B 102 CB CG CD CE NZ REMARK 480 GLU B 154 CG CD OE1 OE2 REMARK 480 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 22 82.33 -63.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN A 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GPG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHIKUNGUNYA MACRO DOMAIN REMARK 900 RELATED ID: 3GPO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHIKUNGUNYA MACRO DOMAIN IN COMPLEX WITH ADP- REMARK 900 RIBOSE REMARK 900 RELATED ID: 3GPQ RELATED DB: PDB DBREF 3GQE A 1 160 UNP P36328 POLN_EEVVP 1330 1489 DBREF 3GQE B 1 160 UNP P36328 POLN_EEVVP 1330 1489 SEQADV 3GQE MET A -1 UNP P36328 EXPRESSION TAG SEQADV 3GQE LYS A 0 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 161 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 162 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 163 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 164 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 165 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS A 166 UNP P36328 EXPRESSION TAG SEQADV 3GQE MET B -1 UNP P36328 EXPRESSION TAG SEQADV 3GQE LYS B 0 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 161 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 162 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 163 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 164 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 165 UNP P36328 EXPRESSION TAG SEQADV 3GQE HIS B 166 UNP P36328 EXPRESSION TAG SEQRES 1 A 168 MET LYS ALA PRO SER TYR HIS VAL VAL ARG GLY ASP ILE SEQRES 2 A 168 ALA THR ALA THR GLU GLY VAL ILE ILE ASN ALA ALA ASN SEQRES 3 A 168 SER LYS GLY GLN PRO GLY GLY GLY VAL CYS GLY ALA LEU SEQRES 4 A 168 TYR LYS LYS PHE PRO GLU SER PHE ASP LEU GLN PRO ILE SEQRES 5 A 168 GLU VAL GLY LYS ALA ARG LEU VAL LYS GLY ALA ALA LYS SEQRES 6 A 168 HIS ILE ILE HIS ALA VAL GLY PRO ASN PHE ASN LYS VAL SEQRES 7 A 168 SER GLU VAL GLU GLY ASP LYS GLN LEU ALA GLU ALA TYR SEQRES 8 A 168 GLU SER ILE ALA LYS ILE VAL ASN ASP ASN ASN TYR LYS SEQRES 9 A 168 SER VAL ALA ILE PRO LEU LEU SER THR GLY ILE PHE SER SEQRES 10 A 168 GLY ASN LYS ASP ARG LEU THR GLN SER LEU ASN HIS LEU SEQRES 11 A 168 LEU THR ALA LEU ASP THR THR ASP ALA ASP VAL ALA ILE SEQRES 12 A 168 TYR CYS ARG ASP LYS LYS TRP GLU MET THR LEU LYS GLU SEQRES 13 A 168 ALA VAL ALA ARG ARG GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 168 MET LYS ALA PRO SER TYR HIS VAL VAL ARG GLY ASP ILE SEQRES 2 B 168 ALA THR ALA THR GLU GLY VAL ILE ILE ASN ALA ALA ASN SEQRES 3 B 168 SER LYS GLY GLN PRO GLY GLY GLY VAL CYS GLY ALA LEU SEQRES 4 B 168 TYR LYS LYS PHE PRO GLU SER PHE ASP LEU GLN PRO ILE SEQRES 5 B 168 GLU VAL GLY LYS ALA ARG LEU VAL LYS GLY ALA ALA LYS SEQRES 6 B 168 HIS ILE ILE HIS ALA VAL GLY PRO ASN PHE ASN LYS VAL SEQRES 7 B 168 SER GLU VAL GLU GLY ASP LYS GLN LEU ALA GLU ALA TYR SEQRES 8 B 168 GLU SER ILE ALA LYS ILE VAL ASN ASP ASN ASN TYR LYS SEQRES 9 B 168 SER VAL ALA ILE PRO LEU LEU SER THR GLY ILE PHE SER SEQRES 10 B 168 GLY ASN LYS ASP ARG LEU THR GLN SER LEU ASN HIS LEU SEQRES 11 B 168 LEU THR ALA LEU ASP THR THR ASP ALA ASP VAL ALA ILE SEQRES 12 B 168 TYR CYS ARG ASP LYS LYS TRP GLU MET THR LEU LYS GLU SEQRES 13 B 168 ALA VAL ALA ARG ARG GLU HIS HIS HIS HIS HIS HIS HET BCN A 167 11 HETNAM BCN BICINE FORMUL 3 BCN C6 H13 N O4 FORMUL 4 HOH *158(H2 O) HELIX 1 1 ASP A 10 ALA A 14 5 5 HELIX 2 2 GLY A 31 CYS A 34 5 4 HELIX 3 3 GLY A 35 PHE A 41 1 7 HELIX 4 4 PRO A 42 PHE A 45 5 4 HELIX 5 5 SER A 77 ASN A 99 1 23 HELIX 6 6 ARG A 120 ASP A 133 1 14 HELIX 7 7 ASP A 145 ARG A 159 1 15 HELIX 8 8 ASP B 10 ALA B 14 5 5 HELIX 9 9 GLY B 35 PHE B 41 1 7 HELIX 10 10 PRO B 42 PHE B 45 5 4 HELIX 11 11 SER B 77 ASN B 100 1 24 HELIX 12 12 ARG B 120 ASP B 133 1 14 HELIX 13 13 ASP B 145 ARG B 158 1 14 SHEET 1 A 6 SER A 3 ARG A 8 0 SHEET 2 A 6 ASP A 138 CYS A 143 1 O VAL A 139 N SER A 3 SHEET 3 A 6 SER A 103 PRO A 107 1 N ILE A 106 O ALA A 140 SHEET 4 A 6 VAL A 18 ALA A 23 1 N VAL A 18 O ALA A 105 SHEET 5 A 6 ILE A 65 VAL A 69 1 O ILE A 66 N ASN A 21 SHEET 6 A 6 ALA A 55 VAL A 58 -1 N VAL A 58 O ILE A 65 SHEET 1 B 6 SER B 3 ARG B 8 0 SHEET 2 B 6 ASP B 138 CYS B 143 1 O VAL B 139 N SER B 3 SHEET 3 B 6 SER B 103 PRO B 107 1 N VAL B 104 O ALA B 140 SHEET 4 B 6 VAL B 18 ALA B 22 1 N VAL B 18 O ALA B 105 SHEET 5 B 6 HIS B 64 ALA B 68 1 O ALA B 68 N ASN B 21 SHEET 6 B 6 ALA B 55 VAL B 58 -1 N VAL B 58 O ILE B 65 SSBOND 1 CYS A 34 CYS B 34 1555 8555 2.23 SITE 1 AC1 9 ALA A 22 GLY A 30 SER A 110 THR A 111 SITE 2 AC1 9 GLY A 112 ILE A 113 PHE A 114 HOH A 286 SITE 3 AC1 9 HOH A 293 CRYST1 129.610 129.610 42.490 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007715 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023535 0.00000