data_3GR5 # _entry.id 3GR5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GR5 RCSB RCSB052210 WWPDB D_1000052210 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GR0 'Periplasmic domain of the T3SS inner membrane protein PrgH from S.typhimurium (fragment 170-362)' unspecified PDB 3GR1 'Periplasmic domain of the T3SS inner membrane protein PrgH from S.typhimurium (fragment 170-392)' unspecified # _pdbx_database_status.entry_id 3GR5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yip, C.K.' 1 'Vockovic, M.' 2 'Strynadka, N.C.J.' 3 # _citation.id primary _citation.title 'A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 16 _citation.page_first 468 _citation.page_last 476 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19396170 _citation.pdbx_database_id_DOI 10.1038/nsmb.1603 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Spreter, T.' 1 primary 'Yip, C.K.' 2 primary 'Sanowar, S.' 3 primary 'Andre, I.' 4 primary 'Kimbrough, T.G.' 5 primary 'Vuckovic, M.' 6 primary 'Pfuetzner, R.A.' 7 primary 'Deng, W.' 8 primary 'Yu, A.C.' 9 primary 'Finlay, B.B.' 10 primary 'Baker, D.' 11 primary 'Miller, S.I.' 12 primary 'Strynadka, N.C.' 13 # _cell.length_a 90.645 _cell.length_b 90.645 _cell.length_c 133.422 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3GR5 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 3GR5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 179 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man EscC 17857.307 1 ? ? 'EscC periplasmic domain, residues 21-174' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENI LYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENI LYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 SER n 1 7 LEU n 1 8 GLU n 1 9 LYS n 1 10 ARG n 1 11 LEU n 1 12 GLY n 1 13 LYS n 1 14 ASN n 1 15 GLU n 1 16 TYR n 1 17 PHE n 1 18 ILE n 1 19 ILE n 1 20 THR n 1 21 LYS n 1 22 SER n 1 23 SER n 1 24 PRO n 1 25 VAL n 1 26 ARG n 1 27 ALA n 1 28 ILE n 1 29 LEU n 1 30 ASN n 1 31 ASP n 1 32 PHE n 1 33 ALA n 1 34 ALA n 1 35 ASN n 1 36 TYR n 1 37 SER n 1 38 ILE n 1 39 PRO n 1 40 VAL n 1 41 PHE n 1 42 ILE n 1 43 SER n 1 44 SER n 1 45 SER n 1 46 VAL n 1 47 ASN n 1 48 ASP n 1 49 ASP n 1 50 PHE n 1 51 SER n 1 52 GLY n 1 53 GLU n 1 54 ILE n 1 55 LYS n 1 56 ASN n 1 57 GLU n 1 58 LYS n 1 59 PRO n 1 60 VAL n 1 61 LYS n 1 62 VAL n 1 63 LEU n 1 64 GLU n 1 65 LYS n 1 66 LEU n 1 67 SER n 1 68 LYS n 1 69 LEU n 1 70 TYR n 1 71 HIS n 1 72 LEU n 1 73 THR n 1 74 TRP n 1 75 TYR n 1 76 TYR n 1 77 ASP n 1 78 GLU n 1 79 ASN n 1 80 ILE n 1 81 LEU n 1 82 TYR n 1 83 ILE n 1 84 TYR n 1 85 LYS n 1 86 THR n 1 87 ASN n 1 88 GLU n 1 89 ILE n 1 90 SER n 1 91 ARG n 1 92 SER n 1 93 ILE n 1 94 ILE n 1 95 THR n 1 96 PRO n 1 97 THR n 1 98 TYR n 1 99 LEU n 1 100 ASP n 1 101 ILE n 1 102 ASP n 1 103 SER n 1 104 LEU n 1 105 LEU n 1 106 LYS n 1 107 TYR n 1 108 LEU n 1 109 SER n 1 110 ASP n 1 111 THR n 1 112 ILE n 1 113 SER n 1 114 VAL n 1 115 ASN n 1 116 LYS n 1 117 ASN n 1 118 SER n 1 119 CYS n 1 120 ASN n 1 121 VAL n 1 122 ARG n 1 123 LYS n 1 124 ILE n 1 125 THR n 1 126 THR n 1 127 PHE n 1 128 ASN n 1 129 SER n 1 130 ILE n 1 131 GLU n 1 132 VAL n 1 133 ARG n 1 134 GLY n 1 135 VAL n 1 136 PRO n 1 137 GLU n 1 138 CYS n 1 139 ILE n 1 140 LYS n 1 141 TYR n 1 142 ILE n 1 143 THR n 1 144 SER n 1 145 LEU n 1 146 SER n 1 147 GLU n 1 148 SER n 1 149 LEU n 1 150 ASP n 1 151 LYS n 1 152 GLU n 1 153 ALA n 1 154 GLN n 1 155 SER n 1 156 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene escC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O52135_ECOLX _struct_ref.pdbx_db_accession O52135 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIY KTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GR5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O52135 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GR5 GLY A 1 ? UNP O52135 ? ? 'EXPRESSION TAG' 18 1 1 3GR5 SER A 2 ? UNP O52135 ? ? 'EXPRESSION TAG' 19 2 1 3GR5 HIS A 3 ? UNP O52135 ? ? 'EXPRESSION TAG' 20 3 1 3GR5 MET A 4 ? UNP O52135 ? ? 'EXPRESSION TAG' 21 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GR5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.43 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.pdbx_details 'microbatch, 2.0 M Ammonium sulfate + 0.1 M sodium acetate pH 4.5 or Bis-Tris pH 6.5' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 # _reflns.entry_id 3GR5 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 18.7 _reflns.number_all ? _reflns.number_obs 20942 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3GR5 _refine.ls_d_res_high 2.050 _refine.ls_d_res_low 18.7 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.790 _refine.ls_number_reflns_obs 20941 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.251 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1072 _refine.B_iso_mean 42.164 _refine.aniso_B[1][1] -0.230 _refine.aniso_B[2][2] -0.230 _refine.aniso_B[3][3] 0.340 _refine.aniso_B[1][2] -0.110 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.096 _refine.overall_SU_B 3.570 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 104.46 _refine.B_iso_min 19.94 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1237 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1329 _refine_hist.d_res_high 2.050 _refine_hist.d_res_low 18.7 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1272 0.032 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1144 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1722 2.102 1.984 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2686 0.983 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 152 6.576 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 199 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1353 0.012 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 239 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 279 0.231 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1310 0.251 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 722 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 72 0.171 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 22 0.314 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 39 0.314 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.293 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 767 1.763 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1259 3.242 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 505 4.355 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 463 7.198 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.050 _refine_ls_shell.d_res_low 2.103 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1433 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1521 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GR5 _struct.title 'Periplasmic domain of the outer membrane secretin EscC from enteropathogenic E.coli (EPEC)' _struct.pdbx_descriptor EscC _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GR5 _struct_keywords.text 'secretin, Type III secretion system, outer membrane, Transport, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? GLY A 12 ? SER A 22 GLY A 29 1 ? 8 HELX_P HELX_P2 2 VAL A 25 ? TYR A 36 ? VAL A 42 TYR A 53 1 ? 12 HELX_P HELX_P3 3 LYS A 58 ? HIS A 71 ? LYS A 75 HIS A 88 1 ? 14 HELX_P HELX_P4 4 ASN A 87 ? ILE A 89 ? ASN A 104 ILE A 106 5 ? 3 HELX_P HELX_P5 5 ASP A 100 ? SER A 109 ? ASP A 117 SER A 126 1 ? 10 HELX_P HELX_P6 6 VAL A 135 ? LYS A 156 ? VAL A 152 LYS A 173 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 119 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 138 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 155 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.062 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 16 ? PRO A 24 ? TYR A 33 PRO A 41 A 2 ASP A 49 ? GLU A 57 ? ASP A 66 GLU A 74 B 1 VAL A 40 ? ILE A 42 ? VAL A 57 ILE A 59 B 2 LEU A 81 ? LYS A 85 ? LEU A 98 LYS A 102 B 3 LEU A 72 ? TYR A 76 ? LEU A 89 TYR A 93 C 1 SER A 90 ? ILE A 94 ? SER A 107 ILE A 111 C 2 ILE A 130 ? GLY A 134 ? ILE A 147 GLY A 151 C 3 CYS A 119 ? LYS A 123 ? CYS A 136 LYS A 140 C 4 ASN A 115 ? LYS A 116 ? ASN A 132 LYS A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 16 ? N TYR A 33 O GLU A 57 ? O GLU A 74 B 1 2 N PHE A 41 ? N PHE A 58 O ILE A 83 ? O ILE A 100 B 2 3 O TYR A 82 ? O TYR A 99 N TYR A 75 ? N TYR A 92 C 1 2 N SER A 92 ? N SER A 109 O VAL A 132 ? O VAL A 149 C 2 3 O ARG A 133 ? O ARG A 150 N ASN A 120 ? N ASN A 137 C 3 4 O CYS A 119 ? O CYS A 136 N LYS A 116 ? N LYS A 133 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 SER A 90 ? SER A 107 . ? 1_555 ? 2 AC1 2 ARG A 91 ? ARG A 108 . ? 1_555 ? 3 AC2 3 ARG A 122 ? ARG A 139 . ? 1_555 ? 4 AC2 3 ILE A 124 ? ILE A 141 . ? 1_555 ? 5 AC2 3 THR A 125 ? THR A 142 . ? 1_555 ? 6 AC3 4 ILE A 19 ? ILE A 36 . ? 1_555 ? 7 AC3 4 THR A 20 ? THR A 37 . ? 1_555 ? 8 AC3 4 LYS A 21 ? LYS A 38 . ? 1_555 ? 9 AC3 4 HOH E . ? HOH A 235 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GR5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3GR5 _atom_sites.fract_transf_matrix[1][1] 0.011032 _atom_sites.fract_transf_matrix[1][2] 0.006369 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007495 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 18 ? ? ? A . n A 1 2 SER 2 19 ? ? ? A . n A 1 3 HIS 3 20 ? ? ? A . n A 1 4 MET 4 21 21 MET MET A . n A 1 5 SER 5 22 22 SER SER A . n A 1 6 SER 6 23 23 SER SER A . n A 1 7 LEU 7 24 24 LEU LEU A . n A 1 8 GLU 8 25 25 GLU GLU A . n A 1 9 LYS 9 26 26 LYS LYS A . n A 1 10 ARG 10 27 27 ARG ARG A . n A 1 11 LEU 11 28 28 LEU LEU A . n A 1 12 GLY 12 29 29 GLY GLY A . n A 1 13 LYS 13 30 30 LYS LYS A . n A 1 14 ASN 14 31 31 ASN ASN A . n A 1 15 GLU 15 32 32 GLU GLU A . n A 1 16 TYR 16 33 33 TYR TYR A . n A 1 17 PHE 17 34 34 PHE PHE A . n A 1 18 ILE 18 35 35 ILE ILE A . n A 1 19 ILE 19 36 36 ILE ILE A . n A 1 20 THR 20 37 37 THR THR A . n A 1 21 LYS 21 38 38 LYS LYS A . n A 1 22 SER 22 39 39 SER SER A . n A 1 23 SER 23 40 40 SER SER A . n A 1 24 PRO 24 41 41 PRO PRO A . n A 1 25 VAL 25 42 42 VAL VAL A . n A 1 26 ARG 26 43 43 ARG ARG A . n A 1 27 ALA 27 44 44 ALA ALA A . n A 1 28 ILE 28 45 45 ILE ILE A . n A 1 29 LEU 29 46 46 LEU LEU A . n A 1 30 ASN 30 47 47 ASN ASN A . n A 1 31 ASP 31 48 48 ASP ASP A . n A 1 32 PHE 32 49 49 PHE PHE A . n A 1 33 ALA 33 50 50 ALA ALA A . n A 1 34 ALA 34 51 51 ALA ALA A . n A 1 35 ASN 35 52 52 ASN ASN A . n A 1 36 TYR 36 53 53 TYR TYR A . n A 1 37 SER 37 54 54 SER SER A . n A 1 38 ILE 38 55 55 ILE ILE A . n A 1 39 PRO 39 56 56 PRO PRO A . n A 1 40 VAL 40 57 57 VAL VAL A . n A 1 41 PHE 41 58 58 PHE PHE A . n A 1 42 ILE 42 59 59 ILE ILE A . n A 1 43 SER 43 60 60 SER SER A . n A 1 44 SER 44 61 61 SER SER A . n A 1 45 SER 45 62 62 SER SER A . n A 1 46 VAL 46 63 63 VAL VAL A . n A 1 47 ASN 47 64 64 ASN ASN A . n A 1 48 ASP 48 65 65 ASP ASP A . n A 1 49 ASP 49 66 66 ASP ASP A . n A 1 50 PHE 50 67 67 PHE PHE A . n A 1 51 SER 51 68 68 SER SER A . n A 1 52 GLY 52 69 69 GLY GLY A . n A 1 53 GLU 53 70 70 GLU GLU A . n A 1 54 ILE 54 71 71 ILE ILE A . n A 1 55 LYS 55 72 72 LYS LYS A . n A 1 56 ASN 56 73 73 ASN ASN A . n A 1 57 GLU 57 74 74 GLU GLU A . n A 1 58 LYS 58 75 75 LYS LYS A . n A 1 59 PRO 59 76 76 PRO PRO A . n A 1 60 VAL 60 77 77 VAL VAL A . n A 1 61 LYS 61 78 78 LYS LYS A . n A 1 62 VAL 62 79 79 VAL VAL A . n A 1 63 LEU 63 80 80 LEU LEU A . n A 1 64 GLU 64 81 81 GLU GLU A . n A 1 65 LYS 65 82 82 LYS LYS A . n A 1 66 LEU 66 83 83 LEU LEU A . n A 1 67 SER 67 84 84 SER SER A . n A 1 68 LYS 68 85 85 LYS LYS A . n A 1 69 LEU 69 86 86 LEU LEU A . n A 1 70 TYR 70 87 87 TYR TYR A . n A 1 71 HIS 71 88 88 HIS HIS A . n A 1 72 LEU 72 89 89 LEU LEU A . n A 1 73 THR 73 90 90 THR THR A . n A 1 74 TRP 74 91 91 TRP TRP A . n A 1 75 TYR 75 92 92 TYR TYR A . n A 1 76 TYR 76 93 93 TYR TYR A . n A 1 77 ASP 77 94 94 ASP ASP A . n A 1 78 GLU 78 95 95 GLU GLU A . n A 1 79 ASN 79 96 96 ASN ASN A . n A 1 80 ILE 80 97 97 ILE ILE A . n A 1 81 LEU 81 98 98 LEU LEU A . n A 1 82 TYR 82 99 99 TYR TYR A . n A 1 83 ILE 83 100 100 ILE ILE A . n A 1 84 TYR 84 101 101 TYR TYR A . n A 1 85 LYS 85 102 102 LYS LYS A . n A 1 86 THR 86 103 103 THR THR A . n A 1 87 ASN 87 104 104 ASN ASN A . n A 1 88 GLU 88 105 105 GLU GLU A . n A 1 89 ILE 89 106 106 ILE ILE A . n A 1 90 SER 90 107 107 SER SER A . n A 1 91 ARG 91 108 108 ARG ARG A . n A 1 92 SER 92 109 109 SER SER A . n A 1 93 ILE 93 110 110 ILE ILE A . n A 1 94 ILE 94 111 111 ILE ILE A . n A 1 95 THR 95 112 112 THR THR A . n A 1 96 PRO 96 113 113 PRO PRO A . n A 1 97 THR 97 114 114 THR THR A . n A 1 98 TYR 98 115 115 TYR TYR A . n A 1 99 LEU 99 116 116 LEU LEU A . n A 1 100 ASP 100 117 117 ASP ASP A . n A 1 101 ILE 101 118 118 ILE ILE A . n A 1 102 ASP 102 119 119 ASP ASP A . n A 1 103 SER 103 120 120 SER SER A . n A 1 104 LEU 104 121 121 LEU LEU A . n A 1 105 LEU 105 122 122 LEU LEU A . n A 1 106 LYS 106 123 123 LYS LYS A . n A 1 107 TYR 107 124 124 TYR TYR A . n A 1 108 LEU 108 125 125 LEU LEU A . n A 1 109 SER 109 126 126 SER SER A . n A 1 110 ASP 110 127 127 ASP ASP A . n A 1 111 THR 111 128 128 THR THR A . n A 1 112 ILE 112 129 129 ILE ILE A . n A 1 113 SER 113 130 130 SER SER A . n A 1 114 VAL 114 131 131 VAL VAL A . n A 1 115 ASN 115 132 132 ASN ASN A . n A 1 116 LYS 116 133 133 LYS LYS A . n A 1 117 ASN 117 134 134 ASN ASN A . n A 1 118 SER 118 135 135 SER SER A . n A 1 119 CYS 119 136 136 CYS CYS A . n A 1 120 ASN 120 137 137 ASN ASN A . n A 1 121 VAL 121 138 138 VAL VAL A . n A 1 122 ARG 122 139 139 ARG ARG A . n A 1 123 LYS 123 140 140 LYS LYS A . n A 1 124 ILE 124 141 141 ILE ILE A . n A 1 125 THR 125 142 142 THR THR A . n A 1 126 THR 126 143 143 THR THR A . n A 1 127 PHE 127 144 144 PHE PHE A . n A 1 128 ASN 128 145 145 ASN ASN A . n A 1 129 SER 129 146 146 SER SER A . n A 1 130 ILE 130 147 147 ILE ILE A . n A 1 131 GLU 131 148 148 GLU GLU A . n A 1 132 VAL 132 149 149 VAL VAL A . n A 1 133 ARG 133 150 150 ARG ARG A . n A 1 134 GLY 134 151 151 GLY GLY A . n A 1 135 VAL 135 152 152 VAL VAL A . n A 1 136 PRO 136 153 153 PRO PRO A . n A 1 137 GLU 137 154 154 GLU GLU A . n A 1 138 CYS 138 155 155 CYS CYS A . n A 1 139 ILE 139 156 156 ILE ILE A . n A 1 140 LYS 140 157 157 LYS LYS A . n A 1 141 TYR 141 158 158 TYR TYR A . n A 1 142 ILE 142 159 159 ILE ILE A . n A 1 143 THR 143 160 160 THR THR A . n A 1 144 SER 144 161 161 SER SER A . n A 1 145 LEU 145 162 162 LEU LEU A . n A 1 146 SER 146 163 163 SER SER A . n A 1 147 GLU 147 164 164 GLU GLU A . n A 1 148 SER 148 165 165 SER SER A . n A 1 149 LEU 149 166 166 LEU LEU A . n A 1 150 ASP 150 167 167 ASP ASP A . n A 1 151 LYS 151 168 168 LYS LYS A . n A 1 152 GLU 152 169 169 GLU GLU A . n A 1 153 ALA 153 170 170 ALA ALA A . n A 1 154 GLN 154 171 171 GLN GLN A . n A 1 155 SER 155 172 172 SER SER A . n A 1 156 LYS 156 173 173 LYS LYS A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E 2 1 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3320 ? 1 MORE -73 ? 1 'SSA (A^2)' 15520 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 45.3225000000 -0.8660254038 -0.5000000000 0.0000000000 78.5008727260 0.0000000000 0.0000000000 -1.0000000000 22.2370000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 224 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.1.24 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 32 ? ? OE1 A GLU 32 ? ? 1.184 1.252 -0.068 0.011 N 2 1 CA A ALA 50 ? ? CB A ALA 50 ? ? 1.654 1.520 0.134 0.021 N 3 1 CG A TRP 91 ? ? CD1 A TRP 91 ? ? 1.474 1.363 0.111 0.014 N 4 1 CE2 A TYR 124 ? ? CD2 A TYR 124 ? ? 1.485 1.389 0.096 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 43 ? ? CZ A ARG 43 ? ? NH1 A ARG 43 ? ? 124.44 120.30 4.14 0.50 N 2 1 NE A ARG 43 ? ? CZ A ARG 43 ? ? NH2 A ARG 43 ? ? 114.76 120.30 -5.54 0.50 N 3 1 CB A ASP 48 ? ? CG A ASP 48 ? ? OD2 A ASP 48 ? ? 124.94 118.30 6.64 0.90 N 4 1 CB A ASP 65 ? ? CG A ASP 65 ? ? OD2 A ASP 65 ? ? 124.42 118.30 6.12 0.90 N 5 1 CB A ASP 119 ? ? CG A ASP 119 ? ? OD2 A ASP 119 ? ? 124.28 118.30 5.98 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 39 ? ? -173.56 115.60 2 1 GLU A 95 ? ? 75.69 -6.57 3 1 THR A 128 ? ? -165.33 65.18 4 1 ILE A 129 ? ? 141.68 152.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 18 ? A GLY 1 2 1 Y 1 A SER 19 ? A SER 2 3 1 Y 1 A HIS 20 ? A HIS 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 3 3 SO4 SO4 A . E 3 HOH 1 4 4 HOH HOH A . E 3 HOH 2 5 5 HOH HOH A . E 3 HOH 3 6 6 HOH HOH A . E 3 HOH 4 7 7 HOH HOH A . E 3 HOH 5 8 8 HOH HOH A . E 3 HOH 6 9 9 HOH HOH A . E 3 HOH 7 10 10 HOH HOH A . E 3 HOH 8 11 11 HOH HOH A . E 3 HOH 9 12 12 HOH HOH A . E 3 HOH 10 13 13 HOH HOH A . E 3 HOH 11 14 14 HOH HOH A . E 3 HOH 12 16 16 HOH HOH A . E 3 HOH 13 17 17 HOH HOH A . E 3 HOH 14 174 1 HOH HOH A . E 3 HOH 15 175 2 HOH HOH A . E 3 HOH 16 176 3 HOH HOH A . E 3 HOH 17 177 18 HOH HOH A . E 3 HOH 18 178 19 HOH HOH A . E 3 HOH 19 179 20 HOH HOH A . E 3 HOH 20 180 21 HOH HOH A . E 3 HOH 21 181 22 HOH HOH A . E 3 HOH 22 182 23 HOH HOH A . E 3 HOH 23 183 24 HOH HOH A . E 3 HOH 24 184 25 HOH HOH A . E 3 HOH 25 185 26 HOH HOH A . E 3 HOH 26 186 27 HOH HOH A . E 3 HOH 27 187 28 HOH HOH A . E 3 HOH 28 188 29 HOH HOH A . E 3 HOH 29 189 30 HOH HOH A . E 3 HOH 30 190 31 HOH HOH A . E 3 HOH 31 191 32 HOH HOH A . E 3 HOH 32 192 33 HOH HOH A . E 3 HOH 33 193 34 HOH HOH A . E 3 HOH 34 194 35 HOH HOH A . E 3 HOH 35 195 36 HOH HOH A . E 3 HOH 36 196 37 HOH HOH A . E 3 HOH 37 197 38 HOH HOH A . E 3 HOH 38 198 39 HOH HOH A . E 3 HOH 39 199 40 HOH HOH A . E 3 HOH 40 200 41 HOH HOH A . E 3 HOH 41 201 42 HOH HOH A . E 3 HOH 42 202 43 HOH HOH A . E 3 HOH 43 203 44 HOH HOH A . E 3 HOH 44 204 45 HOH HOH A . E 3 HOH 45 205 46 HOH HOH A . E 3 HOH 46 206 47 HOH HOH A . E 3 HOH 47 207 48 HOH HOH A . E 3 HOH 48 208 49 HOH HOH A . E 3 HOH 49 209 50 HOH HOH A . E 3 HOH 50 210 51 HOH HOH A . E 3 HOH 51 211 52 HOH HOH A . E 3 HOH 52 212 53 HOH HOH A . E 3 HOH 53 213 54 HOH HOH A . E 3 HOH 54 214 55 HOH HOH A . E 3 HOH 55 215 56 HOH HOH A . E 3 HOH 56 216 57 HOH HOH A . E 3 HOH 57 217 58 HOH HOH A . E 3 HOH 58 218 59 HOH HOH A . E 3 HOH 59 219 60 HOH HOH A . E 3 HOH 60 220 61 HOH HOH A . E 3 HOH 61 221 62 HOH HOH A . E 3 HOH 62 222 63 HOH HOH A . E 3 HOH 63 223 64 HOH HOH A . E 3 HOH 64 224 65 HOH HOH A . E 3 HOH 65 225 66 HOH HOH A . E 3 HOH 66 226 67 HOH HOH A . E 3 HOH 67 227 68 HOH HOH A . E 3 HOH 68 228 69 HOH HOH A . E 3 HOH 69 229 70 HOH HOH A . E 3 HOH 70 230 71 HOH HOH A . E 3 HOH 71 231 72 HOH HOH A . E 3 HOH 72 232 73 HOH HOH A . E 3 HOH 73 233 74 HOH HOH A . E 3 HOH 74 234 75 HOH HOH A . E 3 HOH 75 235 76 HOH HOH A . E 3 HOH 76 236 77 HOH HOH A . E 3 HOH 77 237 78 HOH HOH A . #