HEADER OXIDOREDUCTASE 25-MAR-09 3GR7 TITLE STRUCTURE OF OYE FROM GEOBACILLUS KAUSTOPHILUS, HEXAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GKOYE, XENOBIOTIC REDUCTASE; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 GENE: NAMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEAMTA KEYWDS FLAVIN, FMN, BETA-ALPHA-BARREL, OXIDOREDUCTASE, FLAVOPROTEIN, NADP EXPDTA X-RAY DIFFRACTION AUTHOR M.K.UHL,K.GRUBER REVDAT 3 01-NOV-23 3GR7 1 REMARK REVDAT 2 03-SEP-14 3GR7 1 JRNL VERSN REVDAT 1 31-MAR-10 3GR7 0 JRNL AUTH M.SCHITTMAYER,S.ZACH,M.WINKLER,A.WINKLER,P.MACHEROUX, JRNL AUTH 2 M.K.UHL,K.GRUBER,S.KAMBOURAKIS,D.ROZZELL,A.GLIEDER JRNL TITL OLD YELLOW ENZYME-CATALYZED DEHYDROGENATION OF SATURATED JRNL TITL 2 KETONES JRNL REF ADV.SYNTH.CATAL. V. 353 268 2011 JRNL REFN ISSN 1615-4150 JRNL DOI 10.1002/ADSC.201000862 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 35123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4900 - 9.2360 0.95 624 0 0.2410 0.0000 REMARK 3 2 9.2360 - 7.3730 0.96 578 0 0.2020 0.0000 REMARK 3 3 7.3730 - 6.4530 0.94 558 0 0.2190 0.0000 REMARK 3 4 6.4530 - 5.8690 0.96 561 0 0.2200 0.0000 REMARK 3 5 5.8690 - 5.4510 0.94 542 0 0.2170 0.0000 REMARK 3 6 5.4510 - 5.1320 0.95 537 0 0.1970 0.0000 REMARK 3 7 5.1320 - 4.8760 0.94 526 0 0.1770 0.0000 REMARK 3 8 4.8760 - 4.6650 0.95 530 0 0.1720 0.0000 REMARK 3 9 4.6650 - 4.4860 0.95 542 0 0.1730 0.0000 REMARK 3 10 4.4860 - 4.3320 0.93 518 0 0.1480 0.0000 REMARK 3 11 4.3320 - 4.1970 0.94 521 0 0.1520 0.0000 REMARK 3 12 4.1970 - 4.0770 0.95 521 0 0.1690 0.0000 REMARK 3 13 4.0770 - 3.9700 0.94 533 0 0.1520 0.0000 REMARK 3 14 3.9700 - 3.8740 0.92 505 0 0.1690 0.0000 REMARK 3 15 3.8740 - 3.7860 0.94 507 0 0.1740 0.0000 REMARK 3 16 3.7860 - 3.7050 0.93 515 0 0.1770 0.0000 REMARK 3 17 3.7050 - 3.6310 0.91 495 0 0.1790 0.0000 REMARK 3 18 3.6310 - 3.5630 0.95 535 0 0.1720 0.0000 REMARK 3 19 3.5630 - 3.4990 0.93 490 0 0.1770 0.0000 REMARK 3 20 3.4990 - 3.4400 0.92 509 0 0.1780 0.0000 REMARK 3 21 3.4400 - 3.3850 0.92 498 0 0.1920 0.0000 REMARK 3 22 3.3850 - 3.3330 0.94 517 0 0.1890 0.0000 REMARK 3 23 3.3330 - 3.2840 0.94 501 0 0.1820 0.0000 REMARK 3 24 3.2840 - 3.2380 0.93 519 0 0.1880 0.0000 REMARK 3 25 3.2380 - 3.1940 0.93 496 0 0.2090 0.0000 REMARK 3 26 3.1940 - 3.1520 0.93 505 0 0.1950 0.0000 REMARK 3 27 3.1520 - 3.1130 0.94 512 0 0.2220 0.0000 REMARK 3 28 3.1130 - 3.0760 0.90 496 0 0.2150 0.0000 REMARK 3 29 3.0760 - 3.0400 0.91 486 0 0.2060 0.0000 REMARK 3 30 3.0400 - 3.0060 0.90 484 0 0.1980 0.0000 REMARK 3 31 3.0060 - 2.9730 0.93 515 0 0.2250 0.0000 REMARK 3 32 2.9730 - 2.9420 0.89 481 0 0.2050 0.0000 REMARK 3 33 2.9420 - 2.9120 0.91 481 0 0.2150 0.0000 REMARK 3 34 2.9120 - 2.8830 0.92 517 0 0.1980 0.0000 REMARK 3 35 2.8830 - 2.8550 0.92 486 0 0.2000 0.0000 REMARK 3 36 2.8550 - 2.8290 0.90 482 0 0.2100 0.0000 REMARK 3 37 2.8290 - 2.8030 0.90 486 0 0.2170 0.0000 REMARK 3 38 2.8030 - 2.7780 0.91 499 0 0.2220 0.0000 REMARK 3 39 2.7780 - 2.7540 0.91 468 0 0.2090 0.0000 REMARK 3 40 2.7540 - 2.7310 0.92 510 0 0.2070 0.0000 REMARK 3 41 2.7310 - 2.7090 0.91 492 0 0.2170 0.0000 REMARK 3 42 2.7090 - 2.6870 0.90 467 0 0.2090 0.0000 REMARK 3 43 2.6870 - 2.6660 0.89 489 0 0.2220 0.0000 REMARK 3 44 2.6660 - 2.6460 0.89 477 0 0.2140 0.0000 REMARK 3 45 2.6460 - 2.6260 0.89 472 0 0.2250 0.0000 REMARK 3 46 2.6260 - 2.6070 0.89 474 0 0.2140 0.0000 REMARK 3 47 2.6070 - 2.5880 0.89 485 0 0.2350 0.0000 REMARK 3 48 2.5880 - 2.5700 0.90 482 0 0.2100 0.0000 REMARK 3 49 2.5700 - 2.5530 0.92 484 0 0.2160 0.0000 REMARK 3 50 2.5530 - 2.5360 0.90 496 0 0.2180 0.0000 REMARK 3 51 2.5360 - 2.5190 0.91 490 0 0.2280 0.0000 REMARK 3 52 2.5190 - 2.5030 0.91 472 0 0.2170 0.0000 REMARK 3 53 2.5030 - 2.4870 0.89 469 0 0.2250 0.0000 REMARK 3 54 2.4870 - 2.4710 0.91 498 0 0.2250 0.0000 REMARK 3 55 2.4710 - 2.4560 0.92 487 0 0.2350 0.0000 REMARK 3 56 2.4560 - 2.4420 0.90 490 0 0.2400 0.0000 REMARK 3 57 2.4420 - 2.4270 0.88 457 0 0.2310 0.0000 REMARK 3 58 2.4270 - 2.4130 0.87 477 0 0.2350 0.0000 REMARK 3 59 2.4130 - 2.4000 0.85 450 0 0.2470 0.0000 REMARK 3 60 2.4000 - 2.3860 0.90 470 0 0.2330 0.0000 REMARK 3 61 2.3860 - 2.3730 0.88 471 0 0.2250 0.0000 REMARK 3 62 2.3730 - 2.3600 0.85 468 0 0.2420 0.0000 REMARK 3 63 2.3600 - 2.3480 0.87 460 0 0.2480 0.0000 REMARK 3 64 2.3480 - 2.3360 0.87 463 0 0.2220 0.0000 REMARK 3 65 2.3360 - 2.3230 0.89 451 0 0.2370 0.0000 REMARK 3 66 2.3230 - 2.3120 0.85 464 0 0.2560 0.0000 REMARK 3 67 2.3120 - 2.3000 0.82 434 0 0.2410 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 57.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78600 REMARK 3 B22 (A**2) : -0.78600 REMARK 3 B33 (A**2) : 1.57100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 NULL REMARK 3 ANGLE : 0.876 NULL REMARK 3 CHIRALITY : 0.104 NULL REMARK 3 PLANARITY : 0.003 NULL REMARK 3 DIHEDRAL : 16.855 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 15.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Z41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM BIS-TRIS, 50MM AMMONIUM SULFATE, REMARK 280 30% V/V PENTAERYTHRITOLE ETHOXYLATE, PH 6.3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 173.98000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.99000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.48500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.49500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 217.47500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 173.98000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.99000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.49500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.48500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 217.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 486 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 237 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 237 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 237 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 257 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 257 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 257 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 336 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 336 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 336 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 27.32 80.09 REMARK 500 GLU A 59 162.52 -48.24 REMARK 500 ILE A 76 26.20 -147.18 REMARK 500 ASP A 184 -158.10 -101.20 REMARK 500 SER A 249 -154.10 -114.39 REMARK 500 ALA A 252 7.96 89.73 REMARK 500 GLU B 59 162.49 -47.60 REMARK 500 ILE B 76 26.21 -147.87 REMARK 500 ASP B 184 -158.07 -101.23 REMARK 500 SER B 249 -154.13 -114.51 REMARK 500 ALA B 252 8.49 89.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GR8 RELATED DB: PDB DBREF 3GR7 A 1 340 UNP Q5KXG9 NAMA_GEOKA 1 340 DBREF 3GR7 B 1 340 UNP Q5KXG9 NAMA_GEOKA 1 340 SEQRES 1 A 340 MET ASN THR MET LEU PHE SER PRO TYR THR ILE ARG GLY SEQRES 2 A 340 LEU THR LEU LYS ASN ARG ILE VAL MET SER PRO MET CYS SEQRES 3 A 340 MET TYR SER CYS ASP THR LYS ASP GLY ALA VAL ARG THR SEQRES 4 A 340 TRP HIS LYS ILE HIS TYR PRO ALA ARG ALA VAL GLY GLN SEQRES 5 A 340 VAL GLY LEU ILE ILE VAL GLU ALA THR GLY VAL THR PRO SEQRES 6 A 340 GLN GLY ARG ILE SER GLU ARG ASP LEU GLY ILE TRP SER SEQRES 7 A 340 ASP ASP HIS ILE ALA GLY LEU ARG GLU LEU VAL GLY LEU SEQRES 8 A 340 VAL LYS GLU HIS GLY ALA ALA ILE GLY ILE GLN LEU ALA SEQRES 9 A 340 HIS ALA GLY ARG LYS SER GLN VAL PRO GLY GLU ILE ILE SEQRES 10 A 340 ALA PRO SER ALA VAL PRO PHE ASP ASP SER SER PRO THR SEQRES 11 A 340 PRO LYS GLU MET THR LYS ALA ASP ILE GLU GLU THR VAL SEQRES 12 A 340 GLN ALA PHE GLN ASN GLY ALA ARG ARG ALA LYS GLU ALA SEQRES 13 A 340 GLY PHE ASP VAL ILE GLU ILE HIS ALA ALA HIS GLY TYR SEQRES 14 A 340 LEU ILE ASN GLU PHE LEU SER PRO LEU SER ASN ARG ARG SEQRES 15 A 340 GLN ASP GLU TYR GLY GLY SER PRO GLU ASN ARG TYR ARG SEQRES 16 A 340 PHE LEU GLY GLU VAL ILE ASP ALA VAL ARG GLU VAL TRP SEQRES 17 A 340 ASP GLY PRO LEU PHE VAL ARG ILE SER ALA SER ASP TYR SEQRES 18 A 340 HIS PRO ASP GLY LEU THR ALA LYS ASP TYR VAL PRO TYR SEQRES 19 A 340 ALA LYS ARG MET LYS GLU GLN GLY VAL ASP LEU VAL ASP SEQRES 20 A 340 VAL SER SER GLY ALA ILE VAL PRO ALA ARG MET ASN VAL SEQRES 21 A 340 TYR PRO GLY TYR GLN VAL PRO PHE ALA GLU LEU ILE ARG SEQRES 22 A 340 ARG GLU ALA ASP ILE PRO THR GLY ALA VAL GLY LEU ILE SEQRES 23 A 340 THR SER GLY TRP GLN ALA GLU GLU ILE LEU GLN ASN GLY SEQRES 24 A 340 ARG ALA ASP LEU VAL PHE LEU GLY ARG GLU LEU LEU ARG SEQRES 25 A 340 ASN PRO TYR TRP PRO TYR ALA ALA ALA ARG GLU LEU GLY SEQRES 26 A 340 ALA LYS ILE SER ALA PRO VAL GLN TYR GLU ARG GLY TRP SEQRES 27 A 340 ARG PHE SEQRES 1 B 340 MET ASN THR MET LEU PHE SER PRO TYR THR ILE ARG GLY SEQRES 2 B 340 LEU THR LEU LYS ASN ARG ILE VAL MET SER PRO MET CYS SEQRES 3 B 340 MET TYR SER CYS ASP THR LYS ASP GLY ALA VAL ARG THR SEQRES 4 B 340 TRP HIS LYS ILE HIS TYR PRO ALA ARG ALA VAL GLY GLN SEQRES 5 B 340 VAL GLY LEU ILE ILE VAL GLU ALA THR GLY VAL THR PRO SEQRES 6 B 340 GLN GLY ARG ILE SER GLU ARG ASP LEU GLY ILE TRP SER SEQRES 7 B 340 ASP ASP HIS ILE ALA GLY LEU ARG GLU LEU VAL GLY LEU SEQRES 8 B 340 VAL LYS GLU HIS GLY ALA ALA ILE GLY ILE GLN LEU ALA SEQRES 9 B 340 HIS ALA GLY ARG LYS SER GLN VAL PRO GLY GLU ILE ILE SEQRES 10 B 340 ALA PRO SER ALA VAL PRO PHE ASP ASP SER SER PRO THR SEQRES 11 B 340 PRO LYS GLU MET THR LYS ALA ASP ILE GLU GLU THR VAL SEQRES 12 B 340 GLN ALA PHE GLN ASN GLY ALA ARG ARG ALA LYS GLU ALA SEQRES 13 B 340 GLY PHE ASP VAL ILE GLU ILE HIS ALA ALA HIS GLY TYR SEQRES 14 B 340 LEU ILE ASN GLU PHE LEU SER PRO LEU SER ASN ARG ARG SEQRES 15 B 340 GLN ASP GLU TYR GLY GLY SER PRO GLU ASN ARG TYR ARG SEQRES 16 B 340 PHE LEU GLY GLU VAL ILE ASP ALA VAL ARG GLU VAL TRP SEQRES 17 B 340 ASP GLY PRO LEU PHE VAL ARG ILE SER ALA SER ASP TYR SEQRES 18 B 340 HIS PRO ASP GLY LEU THR ALA LYS ASP TYR VAL PRO TYR SEQRES 19 B 340 ALA LYS ARG MET LYS GLU GLN GLY VAL ASP LEU VAL ASP SEQRES 20 B 340 VAL SER SER GLY ALA ILE VAL PRO ALA ARG MET ASN VAL SEQRES 21 B 340 TYR PRO GLY TYR GLN VAL PRO PHE ALA GLU LEU ILE ARG SEQRES 22 B 340 ARG GLU ALA ASP ILE PRO THR GLY ALA VAL GLY LEU ILE SEQRES 23 B 340 THR SER GLY TRP GLN ALA GLU GLU ILE LEU GLN ASN GLY SEQRES 24 B 340 ARG ALA ASP LEU VAL PHE LEU GLY ARG GLU LEU LEU ARG SEQRES 25 B 340 ASN PRO TYR TRP PRO TYR ALA ALA ALA ARG GLU LEU GLY SEQRES 26 B 340 ALA LYS ILE SER ALA PRO VAL GLN TYR GLU ARG GLY TRP SEQRES 27 B 340 ARG PHE HET FMN A 341 31 HET SO4 A 342 5 HET SO4 A 343 5 HET FMN B 341 31 HET SO4 B 342 5 HET SO4 B 343 5 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *392(H2 O) HELIX 1 1 ARG A 38 GLY A 51 1 14 HELIX 2 2 THR A 64 ARG A 68 5 5 HELIX 3 3 ASP A 80 HIS A 95 1 16 HELIX 4 4 ALA A 106 SER A 110 5 5 HELIX 5 5 THR A 135 GLY A 157 1 23 HELIX 6 6 TYR A 169 SER A 176 1 8 HELIX 7 7 SER A 189 TRP A 208 1 20 HELIX 8 8 THR A 227 LYS A 229 5 3 HELIX 9 9 ASP A 230 GLN A 241 1 12 HELIX 10 10 GLN A 265 ALA A 276 1 12 HELIX 11 11 SER A 288 ASN A 298 1 11 HELIX 12 12 GLY A 307 ASN A 313 1 7 HELIX 13 13 TYR A 315 LEU A 324 1 10 HELIX 14 14 PRO A 331 GLU A 335 5 5 HELIX 15 15 ARG B 38 GLY B 51 1 14 HELIX 16 16 THR B 64 ARG B 68 5 5 HELIX 17 17 ASP B 80 HIS B 95 1 16 HELIX 18 18 ALA B 106 SER B 110 5 5 HELIX 19 19 THR B 135 GLY B 157 1 23 HELIX 20 20 TYR B 169 SER B 176 1 8 HELIX 21 21 SER B 189 TRP B 208 1 20 HELIX 22 22 THR B 227 LYS B 229 5 3 HELIX 23 23 ASP B 230 GLN B 241 1 12 HELIX 24 24 GLN B 265 ALA B 276 1 12 HELIX 25 25 SER B 288 ASN B 298 1 11 HELIX 26 26 GLY B 307 ASN B 313 1 7 HELIX 27 27 TYR B 315 LEU B 324 1 10 HELIX 28 28 PRO B 331 GLU B 335 5 5 SHEET 1 A 2 TYR A 9 ILE A 11 0 SHEET 2 A 2 LEU A 14 LEU A 16 -1 O LEU A 16 N TYR A 9 SHEET 1 B10 LEU A 74 GLY A 75 0 SHEET 2 B10 LEU A 55 GLY A 62 1 N GLY A 62 O LEU A 74 SHEET 3 B10 ALA A 98 ALA A 104 1 O GLN A 102 N THR A 61 SHEET 4 B10 VAL A 160 ALA A 165 1 O GLU A 162 N ILE A 101 SHEET 5 B10 LEU A 212 SER A 217 1 O PHE A 213 N ILE A 161 SHEET 6 B10 LEU A 245 SER A 249 1 O ASP A 247 N VAL A 214 SHEET 7 B10 THR A 280 VAL A 283 1 O GLY A 281 N VAL A 246 SHEET 8 B10 LEU A 303 LEU A 306 1 O PHE A 305 N ALA A 282 SHEET 9 B10 ILE A 20 MET A 22 1 N VAL A 21 O LEU A 306 SHEET 10 B10 LEU A 55 GLY A 62 1 O LEU A 55 N MET A 22 SHEET 1 C 2 ILE A 117 ALA A 118 0 SHEET 2 C 2 LYS A 132 GLU A 133 1 O LYS A 132 N ALA A 118 SHEET 1 D 2 TYR B 9 ILE B 11 0 SHEET 2 D 2 LEU B 14 LEU B 16 -1 O LEU B 16 N TYR B 9 SHEET 1 E10 LEU B 74 GLY B 75 0 SHEET 2 E10 LEU B 55 GLY B 62 1 N GLY B 62 O LEU B 74 SHEET 3 E10 ALA B 98 ALA B 104 1 O GLN B 102 N THR B 61 SHEET 4 E10 VAL B 160 ALA B 165 1 O GLU B 162 N ILE B 101 SHEET 5 E10 LEU B 212 SER B 217 1 O PHE B 213 N ILE B 161 SHEET 6 E10 LEU B 245 SER B 249 1 O SER B 249 N ILE B 216 SHEET 7 E10 THR B 280 VAL B 283 1 O GLY B 281 N VAL B 246 SHEET 8 E10 LEU B 303 LEU B 306 1 O PHE B 305 N ALA B 282 SHEET 9 E10 ILE B 20 MET B 22 1 N VAL B 21 O LEU B 306 SHEET 10 E10 LEU B 55 GLY B 62 1 O LEU B 55 N MET B 22 SHEET 1 F 2 ILE B 117 ALA B 118 0 SHEET 2 F 2 LYS B 132 GLU B 133 1 O LYS B 132 N ALA B 118 SITE 1 AC1 21 SER A 23 PRO A 24 MET A 25 CYS A 26 SITE 2 AC1 21 ALA A 60 GLN A 102 HIS A 164 HIS A 167 SITE 3 AC1 21 ARG A 215 VAL A 283 GLY A 284 LEU A 285 SITE 4 AC1 21 GLY A 307 ARG A 308 ARG A 336 SO4 A 343 SITE 5 AC1 21 HOH A 357 HOH A 392 HOH A 400 HOH A 434 SITE 6 AC1 21 HOH A 516 SITE 1 AC2 3 ASP A 202 ARG A 237 GLN A 241 SITE 1 AC3 5 HIS A 164 HIS A 167 TYR A 169 FMN A 341 SITE 2 AC3 5 HOH A 376 SITE 1 AC4 19 SER B 23 PRO B 24 MET B 25 CYS B 26 SITE 2 AC4 19 ALA B 60 GLN B 102 HIS B 164 HIS B 167 SITE 3 AC4 19 ARG B 215 VAL B 283 LEU B 285 GLY B 307 SITE 4 AC4 19 ARG B 308 ARG B 336 SO4 B 343 HOH B 349 SITE 5 AC4 19 HOH B 383 HOH B 493 HOH B 508 SITE 1 AC5 2 ASP B 202 ARG B 237 SITE 1 AC6 6 ILE B 69 HIS B 164 HIS B 167 TYR B 169 SITE 2 AC6 6 FMN B 341 HOH B 389 CRYST1 101.990 101.990 260.970 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009805 0.005661 0.000000 0.00000 SCALE2 0.000000 0.011322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003832 0.00000