HEADER TRANSCRIPTION REGULATOR 25-MAR-09 3GRA TITLE CRYSTAL STRUCTURE OF ARAC FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, ARAC FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 GENE: PP_3526, PP3526; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS TRANSCRIPTION REGULATOR, PSI-II, 11171E, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.BAGARIA,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3GRA 1 AUTHOR JRNL REMARK LINK REVDAT 2 13-JUL-11 3GRA 1 VERSN REVDAT 1 14-APR-09 3GRA 0 JRNL AUTH A.BAGARIA,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF ARAC FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM PSEUDOMONAS PUTIDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 143431.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 16481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2219 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.42000 REMARK 3 B22 (A**2) : -5.49000 REMARK 3 B33 (A**2) : -7.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.89 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : EGL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : EGL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI(111)CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M TRIS HCL PH 8.5, 25%W/V POLYETHYLENE GLYCOL 3350 , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.92600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.93800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.92600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.93800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 261 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 25 REMARK 465 SER A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 PHE A 214 REMARK 465 SER A 215 REMARK 465 GLY A 216 REMARK 465 ALA A 217 REMARK 465 ARG A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 MSE B 25 REMARK 465 SER B 26 REMARK 465 LEU B 27 REMARK 465 ALA B 28 REMARK 465 VAL B 144 REMARK 465 LEU B 145 REMARK 465 ASP B 146 REMARK 465 ASP B 147 REMARK 465 TYR B 148 REMARK 465 GLY B 149 REMARK 465 CYS B 150 REMARK 465 SER B 151 REMARK 465 ILE B 152 REMARK 465 HIS B 153 REMARK 465 ALA B 157A REMARK 465 SER B 157B REMARK 465 LEU B 157C REMARK 465 SER B 157D REMARK 465 GLU B 157E REMARK 465 ARG B 157F REMARK 465 SER B 157G REMARK 465 PRO B 157H REMARK 465 GLN B 157I REMARK 465 THR B 157J REMARK 465 ARG B 157K REMARK 465 ILE B 157L REMARK 465 THR B 157M REMARK 465 PRO B 157N REMARK 465 ALA B 157O REMARK 465 PHE B 214 REMARK 465 SER B 215 REMARK 465 GLY B 216 REMARK 465 ALA B 217 REMARK 465 ARG B 218 REMARK 465 GLU B 219 REMARK 465 GLY B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 117 CG CD1 CD2 REMARK 470 TRP B 136 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 136 CZ3 CH2 REMARK 470 LEU B 138 CG CD1 CD2 REMARK 470 PRO B 154 CG CD REMARK 470 GLN B 156 CG CD OE1 NE2 REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 110 CD - CE - NZ ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO B 154 N - CA - CB ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 47.45 37.49 REMARK 500 ALA A 92 17.33 -63.75 REMARK 500 LYS A 110 -119.89 -128.88 REMARK 500 TRP A 132 -86.83 67.74 REMARK 500 ASP A 146 41.14 72.76 REMARK 500 ARG A 177 -114.04 60.80 REMARK 500 ASP B 61 22.74 46.96 REMARK 500 LEU B 93 42.59 -68.66 REMARK 500 LEU B 105 -74.19 -49.11 REMARK 500 ARG B 106 9.87 -69.31 REMARK 500 LYS B 110 -118.64 -137.50 REMARK 500 TYR B 111 83.50 52.09 REMARK 500 GLU B 113 -8.52 -54.06 REMARK 500 MSE B 126 136.99 -26.58 REMARK 500 TRP B 132 -103.12 61.70 REMARK 500 ARG B 140 30.30 -76.81 REMARK 500 ALA B 141 -107.90 -170.14 REMARK 500 GLU B 155 56.20 -9.67 REMARK 500 ARG B 177 -94.36 52.85 REMARK 500 TYR B 200 -8.43 -142.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 23 O REMARK 620 2 ASP A 115 OD2 154.4 REMARK 620 3 HOH A 241 O 93.9 103.2 REMARK 620 4 HOH A 257 O 75.0 83.8 97.6 REMARK 620 5 HOH A 262 O 72.3 95.2 159.5 93.4 REMARK 620 6 HOH A 266 O 96.9 102.8 87.5 170.6 79.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11171E RELATED DB: TARGETDB DBREF 3GRA A 28 218 UNP Q88H39 Q88H39_PSEPK 28 218 DBREF 3GRA B 28 218 UNP Q88H39 Q88H39_PSEPK 28 218 SEQADV 3GRA MSE A 25 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA SER A 26 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA LEU A 27 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA GLU A 219 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA GLY A 220 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 221 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 222 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 223 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 224 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 225 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS A 226 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA MSE B 25 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA SER B 26 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA LEU B 27 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA GLU B 219 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA GLY B 220 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 221 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 222 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 223 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 224 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 225 UNP Q88H39 EXPRESSION TAG SEQADV 3GRA HIS B 226 UNP Q88H39 EXPRESSION TAG SEQRES 1 A 202 MSE SER LEU ALA PRO TYR ARG VAL ASP PHE ILE LEU LEU SEQRES 2 A 202 GLU HIS PHE SER MSE ALA SER PHE THR VAL ALA MSE ASP SEQRES 3 A 202 VAL LEU VAL THR ALA ASN LEU LEU ARG ALA ASP SER PHE SEQRES 4 A 202 GLN PHE THR PRO LEU SER LEU ASP GLY ASP ARG VAL LEU SEQRES 5 A 202 SER ASP LEU GLY LEU GLU LEU VAL ALA THR GLU LEU SER SEQRES 6 A 202 ALA ALA ALA LEU LYS GLU LEU ASP LEU LEU VAL VAL CYS SEQRES 7 A 202 GLY GLY LEU ARG THR PRO LEU LYS TYR PRO GLU LEU ASP SEQRES 8 A 202 ARG LEU LEU ASN ASP CYS ALA ALA HIS GLY MSE ALA LEU SEQRES 9 A 202 GLY GLY LEU TRP ASN GLY ALA TRP PHE LEU GLY ARG ALA SEQRES 10 A 202 GLY VAL LEU ASP ASP TYR GLY CYS SER ILE HIS PRO GLU SEQRES 11 A 202 GLN ARG ALA SER LEU SER GLU ARG SER PRO GLN THR ARG SEQRES 12 A 202 ILE THR PRO ALA SER PHE THR LEU ASP ARG ASP ARG LEU SEQRES 13 A 202 SER ALA ALA SER PRO ASN GLY ALA MSE GLU LEU MSE LEU SEQRES 14 A 202 GLY LEU VAL ARG ARG LEU TYR GLY ASP GLY LEU ALA GLU SEQRES 15 A 202 GLY VAL GLU GLU ILE LEU SER PHE SER GLY ALA ARG GLU SEQRES 16 A 202 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 202 MSE SER LEU ALA PRO TYR ARG VAL ASP PHE ILE LEU LEU SEQRES 2 B 202 GLU HIS PHE SER MSE ALA SER PHE THR VAL ALA MSE ASP SEQRES 3 B 202 VAL LEU VAL THR ALA ASN LEU LEU ARG ALA ASP SER PHE SEQRES 4 B 202 GLN PHE THR PRO LEU SER LEU ASP GLY ASP ARG VAL LEU SEQRES 5 B 202 SER ASP LEU GLY LEU GLU LEU VAL ALA THR GLU LEU SER SEQRES 6 B 202 ALA ALA ALA LEU LYS GLU LEU ASP LEU LEU VAL VAL CYS SEQRES 7 B 202 GLY GLY LEU ARG THR PRO LEU LYS TYR PRO GLU LEU ASP SEQRES 8 B 202 ARG LEU LEU ASN ASP CYS ALA ALA HIS GLY MSE ALA LEU SEQRES 9 B 202 GLY GLY LEU TRP ASN GLY ALA TRP PHE LEU GLY ARG ALA SEQRES 10 B 202 GLY VAL LEU ASP ASP TYR GLY CYS SER ILE HIS PRO GLU SEQRES 11 B 202 GLN ARG ALA SER LEU SER GLU ARG SER PRO GLN THR ARG SEQRES 12 B 202 ILE THR PRO ALA SER PHE THR LEU ASP ARG ASP ARG LEU SEQRES 13 B 202 SER ALA ALA SER PRO ASN GLY ALA MSE GLU LEU MSE LEU SEQRES 14 B 202 GLY LEU VAL ARG ARG LEU TYR GLY ASP GLY LEU ALA GLU SEQRES 15 B 202 GLY VAL GLU GLU ILE LEU SER PHE SER GLY ALA ARG GLU SEQRES 16 B 202 GLY HIS HIS HIS HIS HIS HIS MODRES 3GRA MSE A 42 MET SELENOMETHIONINE MODRES 3GRA MSE A 49 MET SELENOMETHIONINE MODRES 3GRA MSE A 126 MET SELENOMETHIONINE MODRES 3GRA MSE A 189 MET SELENOMETHIONINE MODRES 3GRA MSE A 192 MET SELENOMETHIONINE MODRES 3GRA MSE B 42 MET SELENOMETHIONINE MODRES 3GRA MSE B 49 MET SELENOMETHIONINE MODRES 3GRA MSE B 126 MET SELENOMETHIONINE MODRES 3GRA MSE B 189 MET SELENOMETHIONINE MODRES 3GRA MSE B 192 MET SELENOMETHIONINE HET MSE A 42 8 HET MSE A 49 8 HET MSE A 126 8 HET MSE A 189 8 HET MSE A 192 8 HET MSE B 42 8 HET MSE B 49 8 HET MSE B 126 8 HET MSE B 189 8 HET MSE B 192 8 HET EDO A 1 4 HET EDO A 2 4 HET MG A 3 1 HET SO4 A 4 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 MG MG 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *78(H2 O) HELIX 1 1 SER A 41 ARG A 59 1 19 HELIX 2 2 ALA A 90 LYS A 94 5 5 HELIX 3 3 GLU A 113 GLY A 125 1 13 HELIX 4 4 ASN A 133 GLY A 142 1 10 HELIX 5 5 HIS A 152 GLU A 154 5 3 HELIX 6 6 GLN A 155 SER A 163 1 9 HELIX 7 7 SER A 184 GLY A 201 1 18 HELIX 8 8 GLY A 201 SER A 213 1 13 HELIX 9 9 SER B 41 ARG B 59 1 19 HELIX 10 10 TYR B 111 LEU B 114 5 4 HELIX 11 11 ASP B 115 ALA B 123 1 9 HELIX 12 12 ALA B 135 ARG B 140 1 6 HELIX 13 13 SER B 184 TYR B 200 1 17 HELIX 14 14 GLY B 201 SER B 213 1 13 SHEET 1 A 7 THR A 86 GLU A 87 0 SHEET 2 A 7 PHE A 63 SER A 69 1 N SER A 69 O THR A 86 SHEET 3 A 7 TYR A 30 LEU A 36 1 N PHE A 34 O LEU A 68 SHEET 4 A 7 LEU A 98 CYS A 102 1 O VAL A 100 N ILE A 35 SHEET 5 A 7 ALA A 127 LEU A 131 1 O GLY A 129 N VAL A 101 SHEET 6 A 7 ARG A 179 ALA A 182 1 O ALA A 182 N GLY A 130 SHEET 7 A 7 PHE A 173 ASP A 176 -1 N THR A 174 O SER A 181 SHEET 1 B 2 ARG A 74 LEU A 76 0 SHEET 2 B 2 GLU A 82 VAL A 84 -1 O LEU A 83 N VAL A 75 SHEET 1 C 2 TYR A 147 CYS A 149 0 SHEET 2 C 2 THR A 166 ILE A 168 1 O ARG A 167 N TYR A 147 SHEET 1 D 7 THR B 86 GLU B 87 0 SHEET 2 D 7 PHE B 63 SER B 69 1 N PRO B 67 O THR B 86 SHEET 3 D 7 TYR B 30 LEU B 36 1 N PHE B 34 O LEU B 68 SHEET 4 D 7 LEU B 98 CYS B 102 1 O VAL B 100 N ASP B 33 SHEET 5 D 7 ALA B 127 LEU B 131 1 O LEU B 131 N VAL B 101 SHEET 6 D 7 ARG B 179 ALA B 182 1 O LEU B 180 N LEU B 128 SHEET 7 D 7 PHE B 173 ASP B 176 -1 N ASP B 176 O ARG B 179 SHEET 1 E 2 ARG B 74 LEU B 76 0 SHEET 2 E 2 GLU B 82 VAL B 84 -1 O LEU B 83 N VAL B 75 LINK C SER A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N ALA A 43 1555 1555 1.33 LINK C ALA A 48 N MSE A 49 1555 1555 1.34 LINK C MSE A 49 N ASP A 50 1555 1555 1.32 LINK C GLY A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N ALA A 127 1555 1555 1.33 LINK C ALA A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N GLU A 190 1555 1555 1.33 LINK C LEU A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N LEU A 193 1555 1555 1.33 LINK C SER B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N ALA B 43 1555 1555 1.33 LINK C ALA B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N ASP B 50 1555 1555 1.33 LINK C GLY B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N ALA B 127 1555 1555 1.33 LINK C ALA B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N GLU B 190 1555 1555 1.33 LINK C LEU B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N LEU B 193 1555 1555 1.33 LINK MG MG A 3 O HOH A 23 1555 1555 2.40 LINK MG MG A 3 OD2 ASP A 115 1555 1555 2.07 LINK MG MG A 3 O HOH A 241 1555 1555 2.04 LINK MG MG A 3 O HOH A 257 1555 1555 2.19 LINK MG MG A 3 O HOH A 262 1555 1555 2.07 LINK MG MG A 3 O HOH A 266 1555 1555 2.01 SITE 1 AC1 4 LEU A 36 SER A 69 LEU A 70 VAL A 75 SITE 1 AC2 5 ASP A 97 GLU A 113 ARG A 116 GLY A 125 SITE 2 AC2 5 HOH A 229 SITE 1 AC3 6 HOH A 23 ASP A 115 HOH A 241 HOH A 257 SITE 2 AC3 6 HOH A 262 HOH A 266 SITE 1 AC4 4 LEU A 70 GLU A 113 ASP A 178 HOH A 238 CRYST1 49.852 71.876 104.518 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020059 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009568 0.00000