HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-MAR-09 3GRD TITLE CRYSTAL STRUCTURE OF NTF2-SUPERFAMILY PROTEIN WITH UNKNOWN FUNCTION TITLE 2 (NP_977240.1) FROM BACILLUS CEREUS ATCC 10987 AT 1.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED NTF2-SUPERFAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 10987; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 ATCC: 10987; SOURCE 5 GENE: BCE_0917, NP_977240.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_977240.1, NTF2-SUPERFAMILY PROTEIN WITH UNKNOWN FUNCTION, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 30-OCT-24 3GRD 1 REMARK REVDAT 4 01-FEB-23 3GRD 1 REMARK SEQADV LINK REVDAT 3 24-JUL-19 3GRD 1 REMARK LINK REVDAT 2 25-OCT-17 3GRD 1 REMARK REVDAT 1 07-APR-09 3GRD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NTF2-SUPERFAMILY PROTEIN WITH UNKNOWN JRNL TITL 2 FUNCTION (NP_977240.1) FROM BACILLUS CEREUS ATCC 10987 AT JRNL TITL 3 1.25 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 81659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1608 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3328 ; 1.540 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3955 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;40.722 ;25.304 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;11.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 478 ; 0.267 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1726 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1166 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1293 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 389 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.265 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 2.362 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 615 ; 1.648 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2450 ; 3.164 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 4.543 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 878 ; 6.066 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4257 ; 1.991 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 542 ; 9.093 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3974 ; 4.436 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ACETATE (ACT) AND SODIUM (NA) IONS FROM REMARK 3 CRYSTALLIZATION CONDITION ARE MODELED. REMARK 4 REMARK 4 3GRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.29 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97862 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.566 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33.8000% POLYETHYLENE GLYCOL 4000, REMARK 280 0.2000M SODIUM ACETATE, 0.1M TRIS PH 8.29, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.54500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.54500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER REMARK 300 AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 80 CE NZ REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 132 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 10 O HOH A 495 2.14 REMARK 500 OG SER A 70 O HOH A 459 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 76 CD GLU A 76 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -80.87 -120.99 REMARK 500 ASP A 81 59.54 -93.04 REMARK 500 VAL B 56 -74.91 -122.08 REMARK 500 ASP B 81 57.51 -98.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 135 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 61 O REMARK 620 2 TRP A 64 O 83.5 REMARK 620 3 HOH A 158 O 77.5 98.4 REMARK 620 4 HOH A 253 O 99.0 78.8 175.8 REMARK 620 5 HOH A 297 O 164.9 101.9 87.8 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 135 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 222 O REMARK 620 2 VAL B 77 O 89.4 REMARK 620 3 LYS B 80 O 172.5 83.8 REMARK 620 4 HOH B 158 O 93.3 99.8 84.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390498 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GRD A 1 133 UNP Q73CZ7 Q73CZ7_BACC1 1 133 DBREF 3GRD B 1 133 UNP Q73CZ7 Q73CZ7_BACC1 1 133 SEQADV 3GRD GLY A 0 UNP Q73CZ7 EXPRESSION TAG SEQADV 3GRD GLY B 0 UNP Q73CZ7 EXPRESSION TAG SEQRES 1 A 134 GLY MSE PRO LYS ALA ASN LEU GLU ILE ILE ARG SER THR SEQRES 2 A 134 TYR GLU GLY SER ALA SER SER ASN ALA LYS HIS LEU ALA SEQRES 3 A 134 GLU ALA LEU SER GLU LYS VAL GLU TRP THR GLU ALA GLU SEQRES 4 A 134 GLY PHE PRO TYR GLY GLY THR TYR ILE GLY VAL GLU ALA SEQRES 5 A 134 ILE MSE GLU ASN VAL PHE SER ARG LEU GLY SER GLU TRP SEQRES 6 A 134 ASN ASP TYR LYS ALA SER VAL ASN MSE TYR HIS GLU VAL SEQRES 7 A 134 SER GLY LYS ASP VAL ILE ILE ALA GLU GLY MSE TYR SER SEQRES 8 A 134 GLY VAL TYR LYS ASP THR GLY LYS SER PHE GLU ALA GLU SEQRES 9 A 134 PHE VAL HIS VAL TRP GLN LEU GLU ASN GLY LYS ILE VAL SEQRES 10 A 134 LYS PHE LYS GLN TYR VAL ASP SER HIS LEU VAL ARG GLU SEQRES 11 A 134 ALA MSE LYS SER SEQRES 1 B 134 GLY MSE PRO LYS ALA ASN LEU GLU ILE ILE ARG SER THR SEQRES 2 B 134 TYR GLU GLY SER ALA SER SER ASN ALA LYS HIS LEU ALA SEQRES 3 B 134 GLU ALA LEU SER GLU LYS VAL GLU TRP THR GLU ALA GLU SEQRES 4 B 134 GLY PHE PRO TYR GLY GLY THR TYR ILE GLY VAL GLU ALA SEQRES 5 B 134 ILE MSE GLU ASN VAL PHE SER ARG LEU GLY SER GLU TRP SEQRES 6 B 134 ASN ASP TYR LYS ALA SER VAL ASN MSE TYR HIS GLU VAL SEQRES 7 B 134 SER GLY LYS ASP VAL ILE ILE ALA GLU GLY MSE TYR SER SEQRES 8 B 134 GLY VAL TYR LYS ASP THR GLY LYS SER PHE GLU ALA GLU SEQRES 9 B 134 PHE VAL HIS VAL TRP GLN LEU GLU ASN GLY LYS ILE VAL SEQRES 10 B 134 LYS PHE LYS GLN TYR VAL ASP SER HIS LEU VAL ARG GLU SEQRES 11 B 134 ALA MSE LYS SER MODRES 3GRD MSE A 1 MET SELENOMETHIONINE MODRES 3GRD MSE A 53 MET SELENOMETHIONINE MODRES 3GRD MSE A 73 MET SELENOMETHIONINE MODRES 3GRD MSE A 88 MET SELENOMETHIONINE MODRES 3GRD MSE A 131 MET SELENOMETHIONINE MODRES 3GRD MSE B 53 MET SELENOMETHIONINE MODRES 3GRD MSE B 73 MET SELENOMETHIONINE MODRES 3GRD MSE B 88 MET SELENOMETHIONINE MODRES 3GRD MSE B 131 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 53 8 HET MSE A 73 16 HET MSE A 88 24 HET MSE A 131 8 HET MSE B 53 8 HET MSE B 73 16 HET MSE B 88 24 HET MSE B 131 8 HET ACT A 134 8 HET NA A 135 1 HET ACT B 134 8 HET NA B 135 1 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *521(H2 O) HELIX 1 1 ALA A 4 SER A 11 1 8 HELIX 2 2 SER A 16 ALA A 27 1 12 HELIX 3 3 GLY A 48 VAL A 56 1 9 HELIX 4 4 VAL A 56 GLU A 63 1 8 HELIX 5 5 ASP A 123 MSE A 131 1 9 HELIX 6 6 ALA B 4 SER B 11 1 8 HELIX 7 7 SER B 16 ALA B 27 1 12 HELIX 8 8 GLY B 48 VAL B 56 1 9 HELIX 9 9 VAL B 56 GLU B 63 1 8 HELIX 10 10 ASP B 123 MSE B 131 1 9 SHEET 1 A 6 GLY A 44 ILE A 47 0 SHEET 2 A 6 LEU A 28 GLU A 36 -1 N TRP A 34 O TYR A 46 SHEET 3 A 6 LYS A 114 VAL A 122 1 O PHE A 118 N THR A 35 SHEET 4 A 6 SER A 99 GLU A 111 -1 N VAL A 105 O TYR A 121 SHEET 5 A 6 VAL A 82 TYR A 93 -1 N TYR A 89 O ALA A 102 SHEET 6 A 6 TRP A 64 GLU A 76 -1 N ASN A 72 O GLU A 86 SHEET 1 B 6 GLY B 44 ILE B 47 0 SHEET 2 B 6 LEU B 28 GLU B 36 -1 N TRP B 34 O TYR B 46 SHEET 3 B 6 LYS B 114 VAL B 122 1 O PHE B 118 N THR B 35 SHEET 4 B 6 SER B 99 GLU B 111 -1 N VAL B 105 O TYR B 121 SHEET 5 B 6 VAL B 82 TYR B 93 -1 N TYR B 89 O ALA B 102 SHEET 6 B 6 TRP B 64 GLU B 76 -1 N SER B 70 O MSE B 88 LINK C MSE A 1 N PRO A 2 1555 1555 1.33 LINK C ILE A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N GLU A 54 1555 1555 1.34 LINK C AASN A 72 N AMSE A 73 1555 1555 1.33 LINK C BASN A 72 N BMSE A 73 1555 1555 1.33 LINK C AMSE A 73 N TYR A 74 1555 1555 1.31 LINK C BMSE A 73 N TYR A 74 1555 1555 1.34 LINK C GLY A 87 N AMSE A 88 1555 1555 1.33 LINK C GLY A 87 N BMSE A 88 1555 1555 1.32 LINK C GLY A 87 N CMSE A 88 1555 1555 1.33 LINK C AMSE A 88 N TYR A 89 1555 1555 1.32 LINK C BMSE A 88 N TYR A 89 1555 1555 1.32 LINK C CMSE A 88 N TYR A 89 1555 1555 1.33 LINK C ALA A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N LYS A 132 1555 1555 1.32 LINK C ILE B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLU B 54 1555 1555 1.32 LINK C AASN B 72 N AMSE B 73 1555 1555 1.32 LINK C BASN B 72 N BMSE B 73 1555 1555 1.34 LINK C AMSE B 73 N TYR B 74 1555 1555 1.33 LINK C BMSE B 73 N TYR B 74 1555 1555 1.35 LINK C GLY B 87 N AMSE B 88 1555 1555 1.33 LINK C GLY B 87 N BMSE B 88 1555 1555 1.32 LINK C GLY B 87 N CMSE B 88 1555 1555 1.33 LINK C AMSE B 88 N TYR B 89 1555 1555 1.33 LINK C BMSE B 88 N TYR B 89 1555 1555 1.32 LINK C CMSE B 88 N TYR B 89 1555 1555 1.34 LINK C ALA B 130 N MSE B 131 1555 1555 1.31 LINK C MSE B 131 N LYS B 132 1555 1555 1.33 LINK O GLY A 61 NA NA A 135 1555 1555 2.39 LINK O TRP A 64 NA NA A 135 1555 1555 2.36 LINK NA NA A 135 O HOH A 158 1555 1555 2.42 LINK NA NA A 135 O HOH A 253 1555 1555 2.47 LINK NA NA A 135 O HOH A 297 1555 1555 2.38 LINK O HOH A 222 NA NA B 135 1555 1555 2.34 LINK O VAL B 77 NA NA B 135 1555 1555 2.31 LINK O LYS B 80 NA NA B 135 1555 1555 2.39 LINK NA NA B 135 O HOH B 158 1555 1555 2.46 SITE 1 AC1 8 GLU A 36 VAL A 56 PHE A 57 TYR A 89 SITE 2 AC1 8 HIS A 106 PHE A 118 GLN A 120 HOH A 171 SITE 1 AC2 6 GLY A 61 TRP A 64 HOH A 158 HOH A 253 SITE 2 AC2 6 HOH A 297 HOH A 323 SITE 1 AC3 7 GLU B 36 VAL B 56 PHE B 57 TYR B 89 SITE 2 AC3 7 PHE B 118 GLN B 120 HOH B 203 SITE 1 AC4 6 GLU A 14 HOH A 182 HOH A 222 VAL B 77 SITE 2 AC4 6 LYS B 80 HOH B 158 CRYST1 41.090 47.140 151.790 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006588 0.00000 CONECT 1 2 CONECT 2 1 3 5 CONECT 3 2 4 9 CONECT 4 3 CONECT 5 2 6 CONECT 6 5 7 CONECT 7 6 8 CONECT 8 7 CONECT 9 3 CONECT 456 462 CONECT 462 456 463 CONECT 463 462 464 466 CONECT 464 463 465 470 CONECT 465 464 CONECT 466 463 467 CONECT 467 466 468 CONECT 468 467 469 CONECT 469 468 CONECT 470 464 CONECT 545 2361 CONECT 564 2361 CONECT 637 649 CONECT 638 650 CONECT 649 637 651 CONECT 650 638 652 CONECT 651 649 653 657 CONECT 652 650 654 658 CONECT 653 651 655 665 CONECT 654 652 656 665 CONECT 655 653 CONECT 656 654 CONECT 657 651 659 CONECT 658 652 660 CONECT 659 657 661 CONECT 660 658 662 CONECT 661 659 663 CONECT 662 660 664 CONECT 663 661 CONECT 664 662 CONECT 665 653 654 CONECT 776 778 779 780 CONECT 778 776 781 CONECT 779 776 782 CONECT 780 776 783 CONECT 781 778 784 790 CONECT 782 779 785 791 CONECT 783 780 786 792 CONECT 784 781 787 802 CONECT 785 782 788 802 CONECT 786 783 789 802 CONECT 787 784 CONECT 788 785 CONECT 789 786 CONECT 790 781 793 CONECT 791 782 794 CONECT 792 783 795 CONECT 793 790 796 CONECT 794 791 797 CONECT 795 792 798 CONECT 796 793 799 CONECT 797 794 800 CONECT 798 795 801 CONECT 799 796 CONECT 800 797 CONECT 801 798 CONECT 802 784 785 786 CONECT 1182 1185 CONECT 1185 1182 1186 CONECT 1186 1185 1187 1189 CONECT 1187 1186 1188 1193 CONECT 1188 1187 CONECT 1189 1186 1190 CONECT 1190 1189 1191 CONECT 1191 1190 1192 CONECT 1192 1191 CONECT 1193 1187 CONECT 1612 1618 CONECT 1618 1612 1619 CONECT 1619 1618 1620 1622 CONECT 1620 1619 1621 1626 CONECT 1621 1620 CONECT 1622 1619 1623 CONECT 1623 1622 1624 CONECT 1624 1623 1625 CONECT 1625 1624 CONECT 1626 1620 CONECT 1781 1793 CONECT 1782 1794 CONECT 1793 1781 1795 CONECT 1794 1782 1796 CONECT 1795 1793 1797 1801 CONECT 1796 1794 1798 1802 CONECT 1797 1795 1799 1809 CONECT 1798 1796 1800 1809 CONECT 1799 1797 CONECT 1800 1798 CONECT 1801 1795 1803 CONECT 1802 1796 1804 CONECT 1803 1801 1805 CONECT 1804 1802 1806 CONECT 1805 1803 1807 CONECT 1806 1804 1808 CONECT 1807 1805 CONECT 1808 1806 CONECT 1809 1797 1798 CONECT 1843 2370 CONECT 1860 2370 CONECT 1921 1923 1924 1925 CONECT 1923 1921 1926 CONECT 1924 1921 1927 CONECT 1925 1921 1928 CONECT 1926 1923 1929 1935 CONECT 1927 1924 1930 1936 CONECT 1928 1925 1931 1937 CONECT 1929 1926 1932 1947 CONECT 1930 1927 1933 1947 CONECT 1931 1928 1934 1947 CONECT 1932 1929 CONECT 1933 1930 CONECT 1934 1931 CONECT 1935 1926 1938 CONECT 1936 1927 1939 CONECT 1937 1928 1940 CONECT 1938 1935 1941 CONECT 1939 1936 1942 CONECT 1940 1937 1943 CONECT 1941 1938 1944 CONECT 1942 1939 1945 CONECT 1943 1940 1946 CONECT 1944 1941 CONECT 1945 1942 CONECT 1946 1943 CONECT 1947 1929 1930 1931 CONECT 2327 2330 CONECT 2330 2327 2331 CONECT 2331 2330 2332 2334 CONECT 2332 2331 2333 2338 CONECT 2333 2332 CONECT 2334 2331 2335 CONECT 2335 2334 2336 CONECT 2336 2335 2337 CONECT 2337 2336 CONECT 2338 2332 CONECT 2353 2355 2357 2359 CONECT 2354 2356 2358 2360 CONECT 2355 2353 CONECT 2356 2354 CONECT 2357 2353 CONECT 2358 2354 CONECT 2359 2353 CONECT 2360 2354 CONECT 2361 545 564 2393 2490 CONECT 2361 2535 CONECT 2362 2364 2366 2368 CONECT 2363 2365 2367 2369 CONECT 2364 2362 CONECT 2365 2363 CONECT 2366 2362 CONECT 2367 2363 CONECT 2368 2362 CONECT 2369 2363 CONECT 2370 1843 1860 2458 2684 CONECT 2393 2361 CONECT 2458 2370 CONECT 2490 2361 CONECT 2535 2361 CONECT 2684 2370 MASTER 369 0 13 10 12 0 8 6 2620 2 167 22 END