HEADER SIGNALING PROTEIN,PROTEIN BINDING 25-MAR-09 3GRE TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE VPS15 WD REPEAT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE VPS15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WD REPEAT DOMAIN; COMPND 5 SYNONYM: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 15, GOLGI- COMPND 6 RETENTION DEFECTIVE MUTANT PROTEIN 8; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: BY4741; SOURCE 6 GENE: GRD8, VAC4, VPL19, VPS15, YBR0825, YBR097W; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS KEYWDS SEVEN-BLADED PROPELLER, WD REPEAT, SCAFFOLD PROTEIN, ATP-BINDING, KEYWDS 2 ENDOSOME, GOLGI APPARATUS, KINASE, LIPOPROTEIN, MEMBRANE, MYRISTATE, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN TRANSPORT, KEYWDS 4 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, TRANSPORT, SIGNALING KEYWDS 5 PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.L.VANHOOKE,J.SONDEK,L.BETTS REVDAT 3 21-FEB-24 3GRE 1 SEQADV REVDAT 2 01-NOV-17 3GRE 1 REMARK REVDAT 1 28-JUL-09 3GRE 0 JRNL AUTH E.J.HEENAN,J.L.VANHOOKE,B.R.TEMPLE,L.BETTS,J.E.SONDEK, JRNL AUTH 2 H.G.DOHLMAN JRNL TITL STRUCTURE AND FUNCTION OF VPS15 IN THE ENDOSOMAL G PROTEIN JRNL TITL 2 SIGNALING PATHWAY. JRNL REF BIOCHEMISTRY V. 48 6390 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19445518 JRNL DOI 10.1021/BI900621W REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 50917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.72000 REMARK 3 B22 (A**2) : 1.72000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.933 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3231 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4400 ; 1.524 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;36.354 ;24.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;15.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2391 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1349 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2261 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2105 ; 0.984 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3348 ; 1.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1254 ; 2.263 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 3.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.0030 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : 0.52700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M AMMONIUM MALONATE, 0.05 M SODIUM REMARK 280 ACETATE, 2% 2-PROPANOL, PH 6.5, MACROSEEDING INTO MICROBATCH, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.27367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.54733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.54733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.27367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1018 REMARK 465 GLY A 1019 REMARK 465 HIS A 1020 REMARK 465 HIS A 1021 REMARK 465 HIS A 1022 REMARK 465 HIS A 1023 REMARK 465 HIS A 1024 REMARK 465 HIS A 1025 REMARK 465 GLY A 1026 REMARK 465 GLU A 1027 REMARK 465 GLY A 1028 REMARK 465 ASP A 1029 REMARK 465 VAL A 1030 REMARK 465 LYS A 1041 REMARK 465 SER A 1387 REMARK 465 ARG A 1388 REMARK 465 ARG A 1411 REMARK 465 THR A 1412 REMARK 465 SER A 1413 REMARK 465 THR A 1414 REMARK 465 HIS A 1415 REMARK 465 SER A 1416 REMARK 465 VAL A 1417 REMARK 465 ASP A 1418 REMARK 465 ASP A 1419 REMARK 465 SER A 1420 REMARK 465 LEU A 1421 REMARK 465 TYR A 1422 REMARK 465 HIS A 1423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1035 CG CD CE NZ REMARK 470 GLU A1057 CG CD OE1 OE2 REMARK 470 ARG A1068 CD NE CZ NH1 NH2 REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 THR A1093 OG1 CG2 REMARK 470 LYS A1111 CD CE NZ REMARK 470 GLU A1163 CG CD OE1 OE2 REMARK 470 LYS A1167 CG CD CE NZ REMARK 470 LYS A1176 CE NZ REMARK 470 LYS A1180 CE NZ REMARK 470 LYS A1184 CE NZ REMARK 470 GLU A1198 CG CD OE1 OE2 REMARK 470 GLU A1242 CG CD OE1 OE2 REMARK 470 LYS A1288 CD CE NZ REMARK 470 GLU A1321 CD OE1 OE2 REMARK 470 PHE A1389 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A1390 OG REMARK 470 LYS A1408 CE NZ REMARK 470 MET A1409 CG SD CE REMARK 470 LYS A1410 CG CD CE NZ REMARK 470 GLU A1437 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 71 O HOH A 175 2.04 REMARK 500 O HOH A 161 O HOH A 171 2.14 REMARK 500 O HOH A 1 O HOH A 98 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1043 -134.73 -67.32 REMARK 500 THR A1130 120.57 -38.99 REMARK 500 LEU A1169 -60.90 -92.43 REMARK 500 ASN A1196 -159.67 -138.67 REMARK 500 SER A1200 75.63 -152.57 REMARK 500 HIS A1274 47.53 39.71 REMARK 500 ASN A1356 -100.95 47.12 REMARK 500 GLU A1376 89.03 -167.36 REMARK 500 GLU A1437 -169.37 54.92 REMARK 500 THR A1438 99.83 67.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 3GRE A 1027 1454 UNP P22219 VPS15_YEAST 1027 1454 SEQADV 3GRE MET A 1018 UNP P22219 EXPRESSION TAG SEQADV 3GRE GLY A 1019 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1020 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1021 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1022 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1023 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1024 UNP P22219 EXPRESSION TAG SEQADV 3GRE HIS A 1025 UNP P22219 EXPRESSION TAG SEQADV 3GRE GLY A 1026 UNP P22219 EXPRESSION TAG SEQRES 1 A 437 MET GLY HIS HIS HIS HIS HIS HIS GLY GLU GLY ASP VAL SEQRES 2 A 437 GLU SER ILE GLU LYS PHE LEU SER THR PHE LYS ILE LEU SEQRES 3 A 437 PRO PRO LEU ARG ASP TYR LYS GLU PHE GLY PRO ILE GLN SEQRES 4 A 437 GLU ILE VAL ARG SER PRO ASN MET GLY ASN LEU ARG GLY SEQRES 5 A 437 LYS LEU ILE ALA THR LEU MET GLU ASN GLU PRO ASN SER SEQRES 6 A 437 ILE THR SER SER ALA VAL SER PRO GLY GLU THR PRO TYR SEQRES 7 A 437 LEU ILE THR GLY SER ASP GLN GLY VAL ILE LYS ILE TRP SEQRES 8 A 437 ASN LEU LYS GLU ILE ILE VAL GLY GLU VAL TYR SER SER SEQRES 9 A 437 SER LEU THR TYR ASP CYS SER SER THR VAL THR GLN ILE SEQRES 10 A 437 THR MET ILE PRO ASN PHE ASP ALA PHE ALA VAL SER SER SEQRES 11 A 437 LYS ASP GLY GLN ILE ILE VAL LEU LYS VAL ASN HIS TYR SEQRES 12 A 437 GLN GLN GLU SER GLU VAL LYS PHE LEU ASN CYS GLU CYS SEQRES 13 A 437 ILE ARG LYS ILE ASN LEU LYS ASN PHE GLY LYS ASN GLU SEQRES 14 A 437 TYR ALA VAL ARG MET ARG ALA PHE VAL ASN GLU GLU LYS SEQRES 15 A 437 SER LEU LEU VAL ALA LEU THR ASN LEU SER ARG VAL ILE SEQRES 16 A 437 ILE PHE ASP ILE ARG THR LEU GLU ARG LEU GLN ILE ILE SEQRES 17 A 437 GLU ASN SER PRO ARG HIS GLY ALA VAL SER SER ILE CYS SEQRES 18 A 437 ILE ASP GLU GLU CYS CYS VAL LEU ILE LEU GLY THR THR SEQRES 19 A 437 ARG GLY ILE ILE ASP ILE TRP ASP ILE ARG PHE ASN VAL SEQRES 20 A 437 LEU ILE ARG SER TRP SER PHE GLY ASP HIS ALA PRO ILE SEQRES 21 A 437 THR HIS VAL GLU VAL CYS GLN PHE TYR GLY LYS ASN SER SEQRES 22 A 437 VAL ILE VAL VAL GLY GLY SER SER LYS THR PHE LEU THR SEQRES 23 A 437 ILE TRP ASN PHE VAL LYS GLY HIS CYS GLN TYR ALA PHE SEQRES 24 A 437 ILE ASN SER ASP GLU GLN PRO SER MET GLU HIS PHE LEU SEQRES 25 A 437 PRO ILE GLU LYS GLY LEU GLU GLU LEU ASN PHE CYS GLY SEQRES 26 A 437 ILE ARG SER LEU ASN ALA LEU SER THR ILE SER VAL SER SEQRES 27 A 437 ASN ASP LYS ILE LEU LEU THR ASP GLU ALA THR SER SER SEQRES 28 A 437 ILE VAL MET PHE SER LEU ASN GLU LEU SER SER SER LYS SEQRES 29 A 437 ALA VAL ILE SER PRO SER ARG PHE SER ASP VAL PHE ILE SEQRES 30 A 437 PRO THR GLN VAL THR ALA ASN LEU THR MET LEU LEU ARG SEQRES 31 A 437 LYS MET LYS ARG THR SER THR HIS SER VAL ASP ASP SER SEQRES 32 A 437 LEU TYR HIS HIS ASP ILE ILE ASN SER ILE SER THR CYS SEQRES 33 A 437 GLU VAL ASP GLU THR PRO LEU LEU VAL ALA CYS ASP ASN SEQRES 34 A 437 SER GLY LEU ILE GLY ILE PHE GLN FORMUL 2 HOH *200(H2 O) HELIX 1 1 ILE A 1033 LEU A 1037 5 5 HELIX 2 2 PRO A 1045 GLY A 1053 5 9 HELIX 3 3 ASN A 1063 LEU A 1067 5 5 HELIX 4 4 LEU A 1110 VAL A 1115 1 6 HELIX 5 5 LYS A 1180 GLY A 1183 5 4 HELIX 6 6 SER A 1228 GLY A 1232 5 5 HELIX 7 7 SER A 1324 LEU A 1329 5 6 HELIX 8 8 GLY A 1334 LEU A 1338 5 5 HELIX 9 9 SER A 1345 SER A 1350 5 6 HELIX 10 10 GLU A 1364 SER A 1367 5 4 HELIX 11 11 GLU A 1376 SER A 1380 5 5 SHEET 1 A 4 LYS A1070 LEU A1075 0 SHEET 2 A 4 ILE A1450 GLN A1454 -1 O ILE A1452 N ILE A1072 SHEET 3 A 4 PRO A1439 ASP A1445 -1 N ALA A1443 O GLY A1451 SHEET 4 A 4 ILE A1427 GLU A1434 -1 N SER A1431 O VAL A1442 SHEET 1 B 4 ILE A1083 SER A1089 0 SHEET 2 B 4 TYR A1095 SER A1100 -1 O TYR A1095 N SER A1089 SHEET 3 B 4 VAL A1104 ASN A1109 -1 O TRP A1108 N LEU A1096 SHEET 4 B 4 LEU A1123 ASP A1126 -1 O TYR A1125 N ILE A1105 SHEET 1 C 4 VAL A1131 MET A1136 0 SHEET 2 C 4 ALA A1142 SER A1147 -1 O ALA A1144 N THR A1135 SHEET 3 C 4 GLN A1151 GLN A1162 -1 O LEU A1155 N PHE A1143 SHEET 4 C 4 GLU A1165 ASN A1178 -1 O LYS A1167 N TYR A1160 SHEET 1 D 4 ALA A1188 VAL A1195 0 SHEET 2 D 4 SER A1200 THR A1206 -1 O VAL A1203 N ARG A1192 SHEET 3 D 4 ARG A1210 ASP A1215 -1 O ARG A1210 N THR A1206 SHEET 4 D 4 ARG A1221 GLU A1226 -1 O LEU A1222 N ILE A1213 SHEET 1 E 4 VAL A1234 ILE A1239 0 SHEET 2 E 4 VAL A1245 THR A1250 -1 O ILE A1247 N CYS A1238 SHEET 3 E 4 ILE A1255 ASP A1259 -1 O ASP A1256 N LEU A1248 SHEET 4 E 4 VAL A1264 TRP A1269 -1 O ILE A1266 N ILE A1257 SHEET 1 F 6 ALA A1275 VAL A1282 0 SHEET 2 F 6 SER A1290 GLY A1296 -1 O ILE A1292 N GLU A1281 SHEET 3 F 6 THR A1300 ASN A1306 -1 O THR A1303 N VAL A1293 SHEET 4 F 6 HIS A1311 ILE A1317 -1 O HIS A1311 N ASN A1306 SHEET 5 F 6 LEU A1402 LYS A1408 1 O LEU A1405 N ALA A1315 SHEET 6 F 6 VAL A1392 THR A1399 -1 N VAL A1392 O LYS A1408 SHEET 1 G 4 ILE A1352 SER A1355 0 SHEET 2 G 4 LYS A1358 ASP A1363 -1 O LYS A1358 N SER A1355 SHEET 3 G 4 SER A1368 SER A1373 -1 O SER A1368 N ASP A1363 SHEET 4 G 4 LYS A1381 ILE A1384 -1 O LYS A1381 N MET A1371 CISPEP 1 LEU A 1043 PRO A 1044 0 -10.00 CISPEP 2 GLU A 1079 PRO A 1080 0 3.72 CRYST1 85.493 85.493 132.821 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011697 0.006753 0.000000 0.00000 SCALE2 0.000000 0.013506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007529 0.00000