HEADER TRANSFERASE 26-MAR-09 3GRZ TITLE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 METHYLASE FROM TITLE 2 LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT; COMPND 5 SYNONYM: L11 MTASE; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS SOURCE 3 ATCC BAA-365; SOURCE 4 ORGANISM_TAXID: 321956; SOURCE 5 GENE: PRMA, LBUL_0809; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BC-PSGX3(BC); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PLASMID KEYWDS METHYLASE, SAM-BINDING DOMAIN, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,C.MORANO,J.FREEMAN,S.CHANG, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3GRZ 1 REMARK REVDAT 4 10-FEB-21 3GRZ 1 AUTHOR JRNL REMARK REVDAT 3 21-NOV-18 3GRZ 1 AUTHOR REVDAT 2 13-JUL-11 3GRZ 1 VERSN REVDAT 1 07-APR-09 3GRZ 0 JRNL AUTH Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,C.MORANO,J.FREEMAN, JRNL AUTH 2 S.CHANG,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN 11 METHYLASE FROM JRNL TITL 2 LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 28941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3135 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4260 ; 1.248 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 6.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;39.417 ;25.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2321 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1356 ; 0.156 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2110 ; 0.296 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 422 ; 0.155 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.165 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.150 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2026 ; 3.437 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3164 ; 4.848 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1234 ; 5.577 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 8.078 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1408 ; 0.48 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1408 ; 3.83 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30326 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM-POTASSIUM PHOSPHATE PH 6. REMARK 280 10% PEG3K, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.48950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.02750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.48950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.02750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 153 REMARK 465 ALA A 154 REMARK 465 PHE A 155 REMARK 465 GLY A 156 REMARK 465 THR A 157 REMARK 465 GLU A 314 REMARK 465 GLY A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 LYS B 117 REMARK 465 TYR B 118 REMARK 465 GLY B 156 REMARK 465 THR B 157 REMARK 465 GLU B 314 REMARK 465 GLY B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 151 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 151 -78.14 -4.23 REMARK 500 LEU A 234 -117.08 58.91 REMARK 500 HIS B 120 -158.61 -159.87 REMARK 500 ASP B 136 76.36 -113.41 REMARK 500 LEU B 234 -118.04 57.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 150 PRO A 151 -111.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11124P RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TARGET WAS EXPRESSED AS A FULL-LENGTH PROTEIN HOWEVER THE N- REMARK 999 TERMINAL DOMAIN THAT INCLUDES RESIDUES FROM 3 TO ABOUT 116 WAS LOST REMARK 999 DURING CRYSTALLIZATION LIKELY DUE TO PROTEOLYSIS DBREF 3GRZ A 117 313 UNP Q04AV7 PRMA_LACDB 117 313 DBREF 3GRZ B 117 313 UNP Q04AV7 PRMA_LACDB 117 313 SEQADV 3GRZ GLU A 314 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ GLY A 315 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 316 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 317 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 318 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 319 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 320 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS A 321 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ GLU B 314 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ GLY B 315 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 316 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 317 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 318 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 319 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 320 UNP Q04AV7 EXPRESSION TAG SEQADV 3GRZ HIS B 321 UNP Q04AV7 EXPRESSION TAG SEQRES 1 A 205 LYS TYR TYR HIS VAL ILE ASN LEU SER ARG HIS LEU ALA SEQRES 2 A 205 ILE VAL PRO GLU TRP GLU ASP TYR GLN PRO VAL PHE LYS SEQRES 3 A 205 ASP GLN GLU ILE ILE ARG LEU ASP PRO GLY LEU ALA PHE SEQRES 4 A 205 GLY THR GLY ASN HIS GLN THR THR GLN LEU ALA MET LEU SEQRES 5 A 205 GLY ILE GLU ARG ALA MET VAL LYS PRO LEU THR VAL ALA SEQRES 6 A 205 ASP VAL GLY THR GLY SER GLY ILE LEU ALA ILE ALA ALA SEQRES 7 A 205 HIS LYS LEU GLY ALA LYS SER VAL LEU ALA THR ASP ILE SEQRES 8 A 205 SER ASP GLU SER MET THR ALA ALA GLU GLU ASN ALA ALA SEQRES 9 A 205 LEU ASN GLY ILE TYR ASP ILE ALA LEU GLN LYS THR SER SEQRES 10 A 205 LEU LEU ALA ASP VAL ASP GLY LYS PHE ASP LEU ILE VAL SEQRES 11 A 205 ALA ASN ILE LEU ALA GLU ILE LEU LEU ASP LEU ILE PRO SEQRES 12 A 205 GLN LEU ASP SER HIS LEU ASN GLU ASP GLY GLN VAL ILE SEQRES 13 A 205 PHE SER GLY ILE ASP TYR LEU GLN LEU PRO LYS ILE GLU SEQRES 14 A 205 GLN ALA LEU ALA GLU ASN SER PHE GLN ILE ASP LEU LYS SEQRES 15 A 205 MET ARG ALA GLY ARG TRP ILE GLY LEU ALA ILE SER ARG SEQRES 16 A 205 LYS HIS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 205 LYS TYR TYR HIS VAL ILE ASN LEU SER ARG HIS LEU ALA SEQRES 2 B 205 ILE VAL PRO GLU TRP GLU ASP TYR GLN PRO VAL PHE LYS SEQRES 3 B 205 ASP GLN GLU ILE ILE ARG LEU ASP PRO GLY LEU ALA PHE SEQRES 4 B 205 GLY THR GLY ASN HIS GLN THR THR GLN LEU ALA MET LEU SEQRES 5 B 205 GLY ILE GLU ARG ALA MET VAL LYS PRO LEU THR VAL ALA SEQRES 6 B 205 ASP VAL GLY THR GLY SER GLY ILE LEU ALA ILE ALA ALA SEQRES 7 B 205 HIS LYS LEU GLY ALA LYS SER VAL LEU ALA THR ASP ILE SEQRES 8 B 205 SER ASP GLU SER MET THR ALA ALA GLU GLU ASN ALA ALA SEQRES 9 B 205 LEU ASN GLY ILE TYR ASP ILE ALA LEU GLN LYS THR SER SEQRES 10 B 205 LEU LEU ALA ASP VAL ASP GLY LYS PHE ASP LEU ILE VAL SEQRES 11 B 205 ALA ASN ILE LEU ALA GLU ILE LEU LEU ASP LEU ILE PRO SEQRES 12 B 205 GLN LEU ASP SER HIS LEU ASN GLU ASP GLY GLN VAL ILE SEQRES 13 B 205 PHE SER GLY ILE ASP TYR LEU GLN LEU PRO LYS ILE GLU SEQRES 14 B 205 GLN ALA LEU ALA GLU ASN SER PHE GLN ILE ASP LEU LYS SEQRES 15 B 205 MET ARG ALA GLY ARG TRP ILE GLY LEU ALA ILE SER ARG SEQRES 16 B 205 LYS HIS GLU GLY HIS HIS HIS HIS HIS HIS HET GOL A 1 6 HET GOL A 322 6 HET GOL B 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *233(H2 O) HELIX 1 1 ASN A 159 MET A 174 1 16 HELIX 2 2 GLY A 188 LEU A 197 1 10 HELIX 3 3 SER A 208 ASN A 222 1 15 HELIX 4 4 LEU A 250 ILE A 258 1 9 HELIX 5 5 PRO A 259 SER A 263 5 5 HELIX 6 6 GLN A 280 ASN A 291 1 12 HELIX 7 7 ASN B 159 MET B 174 1 16 HELIX 8 8 GLY B 188 LEU B 197 1 10 HELIX 9 9 SER B 208 ASN B 222 1 15 HELIX 10 10 LEU B 250 ILE B 258 1 9 HELIX 11 11 PRO B 259 SER B 263 5 5 HELIX 12 12 GLN B 280 ASN B 291 1 12 SHEET 1 A 3 ILE A 122 SER A 125 0 SHEET 2 A 3 LEU A 128 PRO A 132 -1 O ILE A 130 N ILE A 122 SHEET 3 A 3 GLU A 145 LEU A 149 1 O ILE A 147 N VAL A 131 SHEET 1 B14 ALA A 228 LYS A 231 0 SHEET 2 B14 SER A 201 ASP A 206 1 N ALA A 204 O ALA A 228 SHEET 3 B14 THR A 179 VAL A 183 1 N VAL A 180 O SER A 201 SHEET 4 B14 PHE A 242 ASN A 248 1 O VAL A 246 N VAL A 183 SHEET 5 B14 LEU A 265 ASP A 277 1 O ILE A 272 N ILE A 245 SHEET 6 B14 TRP A 304 ARG A 311 -1 O ILE A 309 N VAL A 271 SHEET 7 B14 PHE A 293 ALA A 301 -1 N GLN A 294 O SER A 310 SHEET 8 B14 PHE B 293 ALA B 301 -1 O LYS B 298 N ARG A 300 SHEET 9 B14 TRP B 304 ARG B 311 -1 O GLY B 306 N MET B 299 SHEET 10 B14 LEU B 265 ASP B 277 -1 N VAL B 271 O ILE B 309 SHEET 11 B14 PHE B 242 ASN B 248 1 N ASP B 243 O GLN B 270 SHEET 12 B14 THR B 179 VAL B 183 1 N VAL B 183 O VAL B 246 SHEET 13 B14 SER B 201 ASP B 206 1 O LEU B 203 N ASP B 182 SHEET 14 B14 ALA B 228 LYS B 231 1 O ALA B 228 N ALA B 204 SHEET 1 C 3 ILE B 122 SER B 125 0 SHEET 2 C 3 LEU B 128 PRO B 132 -1 O ILE B 130 N ILE B 122 SHEET 3 C 3 GLU B 145 LEU B 149 1 O ILE B 147 N ALA B 129 SITE 1 AC1 4 GLU A 145 ILE A 146 LYS A 196 ASN A 222 SITE 1 AC2 6 THR A 205 ASP A 206 ILE A 207 THR A 232 SITE 2 AC2 6 LEU A 234 HOH A 354 SITE 1 AC3 6 HOH B 37 GLY B 184 ASP B 206 SER B 233 SITE 2 AC3 6 LEU B 234 HOH B 383 CRYST1 148.979 56.055 54.051 90.00 90.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006712 0.000000 0.000108 0.00000 SCALE2 0.000000 0.017840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018503 0.00000