HEADER STRUCTURAL PROTEIN 26-MAR-09 3GS9 TITLE CRYSTAL STRUCTURE OF PROPHAGE TAIL PROTEIN GP18 (NP_465809.1) FROM TITLE 2 LISTERIA MONOCYTOGENES EGD-E AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GP18; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E / SEROVAR 1/2A; SOURCE 5 ATCC: BAA-679; SOURCE 6 GENE: LMO2285, NP_465809.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_465809.1, PROPHAGE TAIL PROTEIN GP18, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GS9 1 SEQADV REVDAT 4 24-JUL-19 3GS9 1 REMARK LINK REVDAT 3 01-NOV-17 3GS9 1 REMARK REVDAT 2 13-JUL-11 3GS9 1 HELIX REVDAT 1 14-APR-09 3GS9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROPHAGE TAIL PROTEIN GP18 JRNL TITL 2 (NP_465809.1) FROM LISTERIA MONOCYTOGENES EGD-E AT 1.70 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2848 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3895 ; 1.394 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4630 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 6.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;37.882 ;24.859 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;13.874 ;15.187 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3154 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 527 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2026 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1370 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1579 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 1.979 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 675 ; 0.518 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2746 ; 2.866 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1293 ; 4.405 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1132 ; 5.988 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4171 4.4613 24.9861 REMARK 3 T TENSOR REMARK 3 T11: -0.0435 T22: -0.0200 REMARK 3 T33: -0.0239 T12: -0.0075 REMARK 3 T13: 0.0132 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.3173 L22: 0.8625 REMARK 3 L33: 0.1716 L12: -0.3466 REMARK 3 L13: 0.0062 L23: 0.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0262 S13: 0.0492 REMARK 3 S21: -0.0402 S22: -0.0741 S23: -0.1134 REMARK 3 S31: -0.0032 S32: -0.0030 S33: 0.0347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. LYSINES 71,84,182 APPEAR TO HAVE BEEN PROTECTED FROM REMARK 3 REDUCTIVE METHYLATION AND WERE MODELED AS LYSINE IN BOTH CHAINS. REMARK 3 ALL OTHER LYSINES HAVE BEEN MODELED AS MLY (N-DIMETHYL-LYSINE). REMARK 3 5. CYS27 IS OXIDIZED AS CYSTEINE SULFONIC ACID (OCS). REMARK 4 REMARK 4 3GS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08; 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.65; 4.36 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162; 0.91162, 0.97975, REMARK 200 0.97956 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING); DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.689 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS SOLVED BY MAD METHOD USING A DIFFERENT REMARK 200 CRYSTAL. THE PHASE RESTRAINTS FROM THAT CRYSTAL WERE USED IN THE REMARK 200 CURRENT REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 10.0% PEG 1000, 0.20M REMARK 280 LITHIUM SULFATE, 0.1M PHOSPHATE-CITRATE PH 4.65, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K. NANODROP, 11.50% PEG 6000, 0.1M REMARK 280 CITRIC ACID PH 4.36, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.78750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.13713 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.72400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 67.78750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 39.13713 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.72400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 67.78750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 39.13713 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.72400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.27426 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.44800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 78.27426 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.44800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 78.27426 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 46 REMARK 465 LYS A 47 REMARK 465 ASN A 48 REMARK 465 ALA A 49 REMARK 465 HIS A 50 REMARK 465 VAL A 78 REMARK 465 GLY A 79 REMARK 465 LYS A 80 REMARK 465 ASN A 277 REMARK 465 ASP A 278 REMARK 465 TYR A 279 REMARK 465 ALA A 340 REMARK 465 MLY A 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 45 OG1 CG2 REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 MLY A 119 CE NZ CH1 CH2 REMARK 470 GLU A 195 CD OE1 OE2 REMARK 470 GLU A 234 CD OE1 OE2 REMARK 470 MLY A 276 CG CD CE NZ CH1 CH2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 MLY A 324 CE NZ CH1 CH2 REMARK 470 LEU A 337 CG CD1 CD2 REMARK 470 MLY A 338 CG CD CE NZ CH1 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 42.25 -93.23 REMARK 500 GLU A 34 -52.90 -135.90 REMARK 500 GLU A 34 -56.28 -134.05 REMARK 500 ASP A 131 64.17 -150.37 REMARK 500 ASN A 168 -123.63 48.61 REMARK 500 GLU A 282 33.26 -142.63 REMARK 500 TYR A 308 78.37 -117.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376562 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO REMARK 999 CRYSTALLIZATION. DBREF 3GS9 A 1 341 UNP Q8Y4Z4 Q8Y4Z4_LISMO 1 341 SEQADV 3GS9 GLY A 0 UNP Q8Y4Z4 EXPRESSION TAG SEQRES 1 A 342 GLY MSE ASN SER ASP ILE ILE VAL ALA ASP PHE TRP MLY SEQRES 2 A 342 ASN ASN GLU GLU ILE LEU THR ASP PHE ASP MLY ASP SER SEQRES 3 A 342 PHE OCS GLU SER TRP THR GLU ASN GLU MSE TRP SER ILE SEQRES 4 A 342 GLU PHE MLY VAL ALA GLN THR PRO LYS ASN ALA HIS CYS SEQRES 5 A 342 TYR SER PHE LEU ASP TYR GLU SER SER VAL TYR PHE ARG SEQRES 6 A 342 GLY GLN GLU PHE VAL VAL LYS GLN LEU SER HIS ASP ALA SEQRES 7 A 342 VAL GLY LYS THR LEU SER LYS ASP ILE ARG ALA PRO HIS SEQRES 8 A 342 ILE TYR TYR THR CYS GLN ASP GLY ARG GLN ASP ASP ALA SEQRES 9 A 342 ILE THR GLY SER PHE THR LEU GLU GLN CYS LEU THR HIS SEQRES 10 A 342 ILE PHE MLY THR ASP ASN ARG GLY PHE SER TRP GLU ILE SEQRES 11 A 342 ILE ASP PRO SER ASN ILE LEU GLU MLY VAL GLN GLN GLU SEQRES 12 A 342 ASN PHE GLY ASN ASN ASN TYR LEU THR LEU ILE ASP GLN SEQRES 13 A 342 LEU LEU ASP ASP TYR GLY VAL VAL VAL ILE PRO ASP ASN SEQRES 14 A 342 ARG HIS LEU VAL PHE MLY PRO ARG GLU ILE TYR GLY ALA SEQRES 15 A 342 LYS THR GLU ASN PHE ILE ARG TYR MLY TYR ASN THR ASP SEQRES 16 A 342 GLU ALA SER PHE ASP ILE ASP THR LEU SER LEU MLY THR SEQRES 17 A 342 MLY ILE MLY GLY TYR GLY MLY VAL ASP SER ASN GLY ASN SEQRES 18 A 342 ASN TYR PHE SER PRO ILE THR TYR THR SER PRO GLU VAL SEQRES 19 A 342 GLU MLY TRP GLY ILE ARG TRP GLN GLU PRO VAL SER ASP SEQRES 20 A 342 GLU ARG TYR THR VAL ALA GLY ASN MSE GLN ARG ARG LEU SEQRES 21 A 342 MLY LEU GLU LEU GLN ASP TYR PRO ALA THR THR GLY SER SEQRES 22 A 342 VAL ILE LEU MLY ASN ASP TYR GLU CYS GLU MLY GLY ASP SEQRES 23 A 342 TYR VAL LEU PHE ILE TYR GLU PRO LEU GLY ILE ASP TYR SEQRES 24 A 342 ASP VAL GLN ILE VAL ALA TYR MLY MLY TYR PRO PHE THR SEQRES 25 A 342 ILE MLY ALA PRO GLU ILE THR LEU SER ASN ASN MLY MLY SEQRES 26 A 342 SER ILE VAL SER ILE MSE ALA GLN LEU ALA MLY VAL LEU SEQRES 27 A 342 MLY GLY ALA MLY MODRES 3GS9 MLY A 12 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 23 LYS N-DIMETHYL-LYSINE MODRES 3GS9 OCS A 27 CYS CYSTEINESULFONIC ACID MODRES 3GS9 MSE A 35 MET SELENOMETHIONINE MODRES 3GS9 MLY A 41 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 119 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 138 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 174 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 190 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 206 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 208 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 210 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 214 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 235 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MSE A 255 MET SELENOMETHIONINE MODRES 3GS9 MLY A 260 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 276 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 283 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 306 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 307 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 313 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 323 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 324 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MSE A 330 MET SELENOMETHIONINE MODRES 3GS9 MLY A 335 LYS N-DIMETHYL-LYSINE MODRES 3GS9 MLY A 338 LYS N-DIMETHYL-LYSINE HET MLY A 12 11 HET MLY A 23 11 HET OCS A 27 9 HET MSE A 35 13 HET MLY A 41 11 HET MLY A 119 7 HET MLY A 138 11 HET MLY A 174 11 HET MLY A 190 11 HET MLY A 206 11 HET MLY A 208 22 HET MLY A 210 11 HET MLY A 214 11 HET MLY A 235 11 HET MSE A 255 13 HET MLY A 260 11 HET MLY A 276 5 HET MLY A 283 11 HET MLY A 306 11 HET MLY A 307 11 HET MLY A 313 11 HET MLY A 323 11 HET MLY A 324 7 HET MSE A 330 8 HET MLY A 335 11 HET MLY A 338 5 HETNAM MLY N-DIMETHYL-LYSINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM MSE SELENOMETHIONINE FORMUL 1 MLY 22(C8 H18 N2 O2) FORMUL 1 OCS C3 H7 N O5 S FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 HOH *353(H2 O) HELIX 1 1 ILE A 91 ASP A 97 5 7 HELIX 2 2 THR A 109 MLY A 119 1 11 HELIX 3 3 TYR A 149 GLY A 161 1 13 HELIX 4 4 GLU A 177 TYR A 179 5 3 HELIX 5 5 GLU A 232 GLY A 237 1 6 HELIX 6 6 ASN A 254 LEU A 263 1 10 HELIX 7 7 SER A 325 GLY A 339 1 15 SHEET 1 A 4 GLU A 15 ILE A 17 0 SHEET 2 A 4 ILE A 6 ALA A 8 -1 N VAL A 7 O GLU A 16 SHEET 3 A 4 SER A 60 PHE A 63 -1 O TYR A 62 N ILE A 6 SHEET 4 A 4 GLN A 66 VAL A 69 -1 O PHE A 68 N VAL A 69 SHEET 1 B 7 GLN A 72 LEU A 73 0 SHEET 2 B 7 LEU A 82 PRO A 89 -1 O ARG A 87 N GLN A 72 SHEET 3 B 7 MSE A 35 GLN A 44 -1 N PHE A 40 O ILE A 86 SHEET 4 B 7 OCS A 27 THR A 31 -1 N SER A 29 O SER A 37 SHEET 5 B 7 ILE A 296 MLY A 307 -1 O MLY A 307 N GLU A 28 SHEET 6 B 7 TYR A 286 TYR A 305 -1 N TYR A 305 O ILE A 296 SHEET 7 B 7 LYS A 182 TYR A 189 1 N ILE A 187 O ILE A 290 SHEET 1 C 8 GLN A 72 LEU A 73 0 SHEET 2 C 8 LEU A 82 PRO A 89 -1 O ARG A 87 N GLN A 72 SHEET 3 C 8 MSE A 35 GLN A 44 -1 N PHE A 40 O ILE A 86 SHEET 4 C 8 OCS A 27 THR A 31 -1 N SER A 29 O SER A 37 SHEET 5 C 8 ILE A 296 MLY A 307 -1 O MLY A 307 N GLU A 28 SHEET 6 C 8 GLU A 316 SER A 320 -1 O SER A 320 N GLN A 301 SHEET 7 C 8 ALA A 268 VAL A 287 -1 N VAL A 287 O ILE A 317 SHEET 8 C 8 ALA A 196 ASP A 201 -1 N ASP A 199 O THR A 270 SHEET 1 D 2 ARG A 99 PHE A 108 0 SHEET 2 D 2 VAL A 139 ASN A 148 -1 O PHE A 144 N ILE A 104 SHEET 1 E 3 SER A 126 ILE A 129 0 SHEET 2 E 3 HIS A 170 PRO A 175 1 O PHE A 173 N GLU A 128 SHEET 3 E 3 VAL A 162 ASP A 167 -1 N ASP A 167 O HIS A 170 SHEET 1 F 3 ILE A 226 THR A 229 0 SHEET 2 F 3 MLY A 208 TYR A 212 -1 N ILE A 209 O TYR A 228 SHEET 3 F 3 VAL A 244 SER A 245 1 O VAL A 244 N TYR A 212 LINK C TRP A 11 N MLY A 12 1555 1555 1.33 LINK C MLY A 12 N ASN A 13 1555 1555 1.32 LINK C ASP A 22 N MLY A 23 1555 1555 1.33 LINK C MLY A 23 N ASP A 24 1555 1555 1.33 LINK C PHE A 26 N OCS A 27 1555 1555 1.32 LINK C OCS A 27 N GLU A 28 1555 1555 1.34 LINK C GLU A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N TRP A 36 1555 1555 1.33 LINK C PHE A 40 N MLY A 41 1555 1555 1.33 LINK C MLY A 41 N VAL A 42 1555 1555 1.33 LINK C PHE A 118 N MLY A 119 1555 1555 1.34 LINK C MLY A 119 N THR A 120 1555 1555 1.32 LINK C GLU A 137 N MLY A 138 1555 1555 1.34 LINK C MLY A 138 N VAL A 139 1555 1555 1.34 LINK C PHE A 173 N MLY A 174 1555 1555 1.33 LINK C MLY A 174 N PRO A 175 1555 1555 1.34 LINK C TYR A 189 N MLY A 190 1555 1555 1.33 LINK C MLY A 190 N TYR A 191 1555 1555 1.34 LINK C LEU A 205 N MLY A 206 1555 1555 1.34 LINK C MLY A 206 N THR A 207 1555 1555 1.34 LINK C THR A 207 N AMLY A 208 1555 1555 1.33 LINK C THR A 207 N BMLY A 208 1555 1555 1.33 LINK C AMLY A 208 N ILE A 209 1555 1555 1.33 LINK C BMLY A 208 N ILE A 209 1555 1555 1.33 LINK C ILE A 209 N MLY A 210 1555 1555 1.33 LINK C MLY A 210 N GLY A 211 1555 1555 1.34 LINK C GLY A 213 N MLY A 214 1555 1555 1.33 LINK C MLY A 214 N VAL A 215 1555 1555 1.34 LINK C GLU A 234 N MLY A 235 1555 1555 1.32 LINK C MLY A 235 N TRP A 236 1555 1555 1.34 LINK C ASN A 254 N MSE A 255 1555 1555 1.32 LINK C MSE A 255 N GLN A 256 1555 1555 1.33 LINK C LEU A 259 N MLY A 260 1555 1555 1.33 LINK C MLY A 260 N LEU A 261 1555 1555 1.33 LINK C LEU A 275 N MLY A 276 1555 1555 1.33 LINK C GLU A 282 N MLY A 283 1555 1555 1.34 LINK C MLY A 283 N GLY A 284 1555 1555 1.33 LINK C TYR A 305 N MLY A 306 1555 1555 1.34 LINK C MLY A 306 N MLY A 307 1555 1555 1.34 LINK C MLY A 307 N TYR A 308 1555 1555 1.34 LINK C ILE A 312 N MLY A 313 1555 1555 1.33 LINK C MLY A 313 N ALA A 314 1555 1555 1.33 LINK C ASN A 322 N MLY A 323 1555 1555 1.33 LINK C MLY A 323 N MLY A 324 1555 1555 1.34 LINK C MLY A 324 N SER A 325 1555 1555 1.33 LINK C ILE A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N ALA A 331 1555 1555 1.33 LINK C ALA A 334 N MLY A 335 1555 1555 1.34 LINK C MLY A 335 N VAL A 336 1555 1555 1.34 LINK C LEU A 337 N MLY A 338 1555 1555 1.34 LINK C MLY A 338 N GLY A 339 1555 1555 1.33 CRYST1 135.575 135.575 59.172 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007376 0.004259 0.000000 0.00000 SCALE2 0.000000 0.008517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016900 0.00000