HEADER ISOMERASE 26-MAR-09 3GSE TITLE CRYSTAL STRUCTURE OF MENAQUINONE-SPECIFIC ISOCHORISMATE SYNTHASE FROM TITLE 2 YERSINIA PESTIS CO92 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENAQUINONE-SPECIFIC ISOCHORISMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.4.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: MENF, YPO2528; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MENAQUINONE-SPECIFIC ISOCHORISMATE SYNTHASE, MENF, YERSINIA PESTIS KEYWDS 2 CO92, YPO2528, CSGID, ISOMERASE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.GU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-SEP-23 3GSE 1 REMARK REVDAT 3 01-NOV-17 3GSE 1 REMARK REVDAT 2 13-JUL-11 3GSE 1 VERSN REVDAT 1 05-MAY-09 3GSE 0 JRNL AUTH B.NOCEK,M.GU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF MENAQUINONE-SPECIFIC ISOCHORISMATE JRNL TITL 2 SYNTHASE FROM YERSINIA PESTIS CO92 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 19054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.89000 REMARK 3 B22 (A**2) : -1.64000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.386 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3446 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2358 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4666 ; 1.477 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5703 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 6.992 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.771 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;14.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3845 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 714 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2115 ; 0.643 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 855 ; 0.148 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3379 ; 1.219 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 2.173 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1287 ; 3.362 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9490 -3.5393 0.7009 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.0560 REMARK 3 T33: 0.0771 T12: -0.0064 REMARK 3 T13: 0.0033 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.7306 L22: 0.9548 REMARK 3 L33: 1.9721 L12: -0.3448 REMARK 3 L13: 0.3086 L23: -0.6165 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0855 S13: -0.0072 REMARK 3 S21: 0.1140 S22: -0.0050 S23: 0.0589 REMARK 3 S31: -0.0076 S32: -0.0009 S33: 0.0279 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3316 -6.7340 -1.4253 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0712 REMARK 3 T33: 0.1332 T12: -0.0205 REMARK 3 T13: 0.0150 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8658 L22: 0.6636 REMARK 3 L33: 2.4888 L12: -0.2220 REMARK 3 L13: 0.3157 L23: -0.6676 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0465 S13: -0.0589 REMARK 3 S21: -0.0545 S22: 0.0327 S23: 0.1067 REMARK 3 S31: 0.1017 S32: -0.2411 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0889 -12.2593 -29.8512 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.1697 REMARK 3 T33: 0.1268 T12: 0.0622 REMARK 3 T13: 0.0114 T23: -0.0745 REMARK 3 L TENSOR REMARK 3 L11: 2.4755 L22: 0.1504 REMARK 3 L33: 8.4829 L12: 0.4082 REMARK 3 L13: 3.3730 L23: 0.0978 REMARK 3 S TENSOR REMARK 3 S11: -0.1505 S12: 0.1617 S13: -0.0290 REMARK 3 S21: -0.0210 S22: 0.0711 S23: -0.0489 REMARK 3 S31: 0.1847 S32: 0.3438 S33: 0.0793 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6828 -4.9172 -25.3969 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.0700 REMARK 3 T33: 0.0626 T12: 0.0632 REMARK 3 T13: 0.0265 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.9486 L22: 1.4039 REMARK 3 L33: 2.6187 L12: 0.1091 REMARK 3 L13: 0.2694 L23: 0.2051 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.1235 S13: 0.0085 REMARK 3 S21: -0.2441 S22: -0.1230 S23: 0.0261 REMARK 3 S31: 0.1940 S32: 0.0568 S33: 0.0945 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2413 14.9887 -26.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0580 REMARK 3 T33: 0.0596 T12: 0.0128 REMARK 3 T13: 0.0015 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8111 L22: 0.8280 REMARK 3 L33: 1.5130 L12: 0.1397 REMARK 3 L13: -1.7165 L23: -0.2131 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: 0.1250 S13: 0.1022 REMARK 3 S21: -0.1006 S22: 0.0133 S23: 0.0008 REMARK 3 S31: -0.0064 S32: 0.0251 S33: -0.0809 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0474 15.7265 -23.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0664 REMARK 3 T33: 0.0621 T12: 0.0036 REMARK 3 T13: 0.0138 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.2689 L22: 1.2654 REMARK 3 L33: 1.8429 L12: -0.5309 REMARK 3 L13: -1.9285 L23: -0.1425 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0328 S13: -0.0016 REMARK 3 S21: -0.0493 S22: 0.0361 S23: 0.0810 REMARK 3 S31: -0.0704 S32: -0.0316 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0306 8.6466 -18.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.1421 REMARK 3 T33: 0.0860 T12: 0.0126 REMARK 3 T13: -0.0482 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.6604 L22: 4.5924 REMARK 3 L33: 4.5994 L12: -1.2259 REMARK 3 L13: -1.6562 L23: 1.9065 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: 0.2779 S13: -0.0120 REMARK 3 S21: -0.1590 S22: -0.1009 S23: 0.3055 REMARK 3 S31: 0.0070 S32: -0.5528 S33: 0.0518 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3668 -1.4571 -34.8496 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.2962 REMARK 3 T33: 0.1790 T12: 0.0507 REMARK 3 T13: -0.1045 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 3.2723 L22: 9.5753 REMARK 3 L33: 8.1383 L12: 0.4363 REMARK 3 L13: -1.4949 L23: -2.9481 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: 0.1798 S13: 0.2365 REMARK 3 S21: -0.0628 S22: -0.1581 S23: 0.4380 REMARK 3 S31: -0.1027 S32: -0.7425 S33: 0.2237 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 382 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0204 -3.3825 -19.3347 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0601 REMARK 3 T33: 0.0852 T12: 0.0041 REMARK 3 T13: -0.0107 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.3821 L22: 2.4090 REMARK 3 L33: 3.8557 L12: -0.8761 REMARK 3 L13: -1.3796 L23: 2.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.0760 S12: 0.0433 S13: -0.0152 REMARK 3 S21: -0.0019 S22: 0.1025 S23: -0.0407 REMARK 3 S31: 0.2793 S32: 0.0530 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 422 A 447 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1093 -2.3254 -37.0729 REMARK 3 T TENSOR REMARK 3 T11: 0.6021 T22: 0.4831 REMARK 3 T33: 0.3316 T12: -0.1806 REMARK 3 T13: 0.0033 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.5916 L22: 0.7926 REMARK 3 L33: 7.7220 L12: -0.5563 REMARK 3 L13: 3.0441 L23: -1.9496 REMARK 3 S TENSOR REMARK 3 S11: -0.2306 S12: 0.5199 S13: -0.0491 REMARK 3 S21: 0.0041 S22: 0.1024 S23: -0.0423 REMARK 3 S31: -0.6983 S32: 0.9334 S33: 0.1282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.11900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3BZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE 10% DIOXANE, REMARK 280 0.1 M MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.49850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.09500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.49850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PHE A 106 REMARK 465 GLY A 107 REMARK 465 GLN A 108 REMARK 465 LEU A 109 REMARK 465 THR A 110 REMARK 465 ASP A 111 REMARK 465 ASN A 112 REMARK 465 GLY A 113 REMARK 465 LEU A 114 REMARK 465 VAL A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 LYS A 118 REMARK 465 GLN A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 ASP A 436 REMARK 465 ASN A 437 REMARK 465 LYS A 438 REMARK 465 SER A 439 REMARK 465 ALA A 440 REMARK 465 GLY A 441 REMARK 465 ALA A 450 REMARK 465 GLN A 451 REMARK 465 PRO A 452 REMARK 465 VAL A 453 REMARK 465 LYS A 454 REMARK 465 ALA A 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 67 CB CYS A 67 SG -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 92 97.41 -68.98 REMARK 500 THR A 149 -46.18 -136.26 REMARK 500 ASN A 236 74.91 -102.90 REMARK 500 GLN A 265 -124.35 58.15 REMARK 500 ALA A 274 141.84 -174.56 REMARK 500 SER A 444 -35.95 -33.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 458 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00582 RELATED DB: TARGETDB DBREF 3GSE A 1 455 UNP Q0WDZ8 Q0WDZ8_YERPE 1 455 SEQADV 3GSE SER A -2 UNP Q0WDZ8 EXPRESSION TAG SEQADV 3GSE ASN A -1 UNP Q0WDZ8 EXPRESSION TAG SEQADV 3GSE ALA A 0 UNP Q0WDZ8 EXPRESSION TAG SEQRES 1 A 458 SER ASN ALA MET LYS GLN LEU SER GLY LEU LEU GLY GLU SEQRES 2 A 458 LEU ARG GLN LYS LEU CYS ALA GLY PHE PRO GLU GLN ALA SEQRES 3 A 458 GLY ILE GLN GLN LEU ILE PHE PRO ALA PRO GLY LEU VAL SEQRES 4 A 458 GLY ARG GLN LEU LEU GLU TRP LEU THR ALA GLN THR HIS SEQRES 5 A 458 PHE PRO GLN PHE TYR TRP ARG HIS ARG ASP ASN HIS GLU SEQRES 6 A 458 GLU ALA ALA VAL CYS GLY GLN THR ARG SER PHE ALA ASP SEQRES 7 A 458 MET LYS ASP ALA ASP ASP PHE ILE GLN GLN ASN PRO ASP SEQRES 8 A 458 ALA ASN GLY LEU ARG ILE TRP GLY LEU ASN ALA PHE GLU SEQRES 9 A 458 PRO VAL MET VAL PHE GLY GLN LEU THR ASP ASN GLY LEU SEQRES 10 A 458 VAL SER GLY LYS ASN ALA GLN ALA SER PHE LEU PHE LEU SEQRES 11 A 458 PRO ARG LEU GLU ILE LEU ARG ARG GLY LYS LYS THR SER SEQRES 12 A 458 LEU THR LEU ASN LEU SER SER GLU THR SER LEU GLN LYS SEQRES 13 A 458 ASP ALA LEU GLN ALA ILE THR PHE ILE ASP GLN LEU MET SEQRES 14 A 458 ALA ALA ARG ALA LEU PRO VAL LEU ASN ALA ARG ILE GLN SEQRES 15 A 458 HIS SER SER HIS THR PRO GLY TYR PRO GLN TRP ARG ASN SEQRES 16 A 458 LEU ILE GLN GLN ALA LEU ASN ASP ILE GLU GLN GLN LYS SEQRES 17 A 458 LEU ASP LYS VAL VAL LEU ALA ARG THR THR THR LEU THR SEQRES 18 A 458 LEU ASN LYS PRO LEU SER CYS ALA ALA PHE MET ALA ALA SEQRES 19 A 458 SER ARG GLN VAL ASN HIS ARG CYS TYR HIS PHE MET LEU SEQRES 20 A 458 ARG PHE ASP ASP ARG GLN ALA PHE LEU GLY SER SER PRO SEQRES 21 A 458 GLU ARG LEU TYR LEU ARG GLN GLN LEU HIS LEU GLU THR SEQRES 22 A 458 GLU ALA LEU ALA GLY THR VAL SER ASN LEU ASP SER ASP SEQRES 23 A 458 PRO GLN ALA ALA VAL LEU ALA ASP TRP LEU MET HIS ASP SEQRES 24 A 458 GLU LYS ASN GLN ARG GLU ASN LEU LEU VAL VAL ASP ASP SEQRES 25 A 458 ILE CYS GLN ARG LEU GLN GLY GLY VAL THR ALA VAL ASP SEQRES 26 A 458 VAL MET PRO PRO GLU ILE ILE ARG LEU ARG LYS VAL GLN SEQRES 27 A 458 HIS LEU ARG ARG ARG ILE CYS ALA GLN LEU SER ARG ALA SEQRES 28 A 458 SER ASP THR ASP CYS LEU GLN ARG LEU GLN PRO THR ALA SEQRES 29 A 458 ALA VAL ALA GLY LEU PRO ARG GLU ALA ALA ARG GLN PHE SEQRES 30 A 458 ILE ALA LYS HIS GLU LEU PHE SER ARG GLY TRP TYR ALA SEQRES 31 A 458 GLY SER ALA GLY TYR LEU SER LEU LYS ARG THR GLU PHE SEQRES 32 A 458 SER VAL ALA LEU ARG SER ALA ARG VAL ASP GLY GLN GLN SEQRES 33 A 458 ILE HIS LEU TYR ALA GLY ALA GLY ILE VAL ALA GLY SER SEQRES 34 A 458 ASP ALA GLU GLN GLU TRP GLN GLU ILE ASP ASN LYS SER SEQRES 35 A 458 ALA GLY LEU GLN SER LEU LEU GLU HIS GLU ALA GLN PRO SEQRES 36 A 458 VAL LYS ALA HET SO4 A 456 5 HET SO4 A 457 5 HET SO4 A 458 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *164(H2 O) HELIX 1 1 GLN A 3 ALA A 17 1 15 HELIX 2 2 PRO A 33 ARG A 38 5 6 HELIX 3 3 GLN A 39 ALA A 46 1 8 HELIX 4 4 ASP A 75 GLN A 85 1 11 HELIX 5 5 SER A 150 GLN A 164 1 15 HELIX 6 6 GLY A 186 GLU A 202 1 17 HELIX 7 7 SER A 224 ASN A 236 1 13 HELIX 8 8 SER A 282 HIS A 295 1 14 HELIX 9 9 ASP A 296 GLN A 315 1 20 HELIX 10 10 SER A 349 GLN A 358 1 10 HELIX 11 11 THR A 360 ALA A 364 1 5 HELIX 12 12 PRO A 367 GLU A 379 1 13 HELIX 13 13 ASP A 427 ILE A 435 1 9 HELIX 14 14 LEU A 442 LEU A 446 5 5 CISPEP 1 PHE A 50 PRO A 51 0 -2.59 CISPEP 2 THR A 184 PRO A 185 0 -7.19 CISPEP 3 GLN A 358 PRO A 359 0 -2.89 CISPEP 4 LEU A 366 PRO A 367 0 -1.33 SITE 1 AC1 6 HIS A 57 ARG A 58 ARG A 259 ARG A 340 SITE 2 AC1 6 HOH A 528 HOH A 617 SITE 1 AC2 4 LYS A 14 GLN A 27 LEU A 28 ILE A 29 SITE 1 AC3 2 ARG A 238 ARG A 330 CRYST1 84.190 76.997 70.414 90.00 90.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011878 0.000000 0.000080 0.00000 SCALE2 0.000000 0.012988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014202 0.00000