HEADER LIPID BINDING PROTEIN 27-MAR-09 3GSH TITLE THREE-DIMENSIONAL STRUCTURE OF A POST TRANSLATIONAL MODIFIED BARLEY TITLE 2 LTP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC LIPID-TRANSFER PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LTP 1, PROBABLE AMYLASE/PROTEASE INHIBITOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_COMMON: BARLEY; SOURCE 4 ORGANISM_TAXID: 4513 KEYWDS LTP1, POST-TRANSCRIPTIONAL MODIFICATION, OXYLIPIN, LIPID- BINDING, KEYWDS 2 LIPOPROTEIN, TRANSPORT, LIPID BINDING PROTEIN, DISULFIDE BOND, KEYWDS 3 LIPID-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.B.LASCOMBE,T.PRANGE,B.BAKAN,D.MARION REVDAT 4 30-OCT-24 3GSH 1 REMARK LINK REVDAT 3 01-NOV-17 3GSH 1 REMARK REVDAT 2 13-JUL-11 3GSH 1 VERSN REVDAT 1 15-DEC-09 3GSH 0 SPRSDE 15-DEC-09 3GSH 3CEE JRNL AUTH B.BAKAN,M.HAMBERG,V.LARUE,T.PRANGE,D.MARION,M.B.LASCOMBE JRNL TITL THE CRYSTAL STRUCTURE OF OXYLIPIN-CONJUGATED BARLEY LTP1 JRNL TITL 2 HIGHLIGHTS THE UNIQUE PLASTICITY OF THE HYDROPHOBIC CAVITY JRNL TITL 3 OF THESE PLANT LIPID-BINDING PROTEINS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 390 780 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19836358 JRNL DOI 10.1016/J.BBRC.2009.10.049 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1502 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2052 ; 1.646 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 4.845 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;34.705 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;14.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1166 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 799 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1026 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.189 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.334 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 3 ; 0.306 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 946 ; 0.918 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1538 ; 1.577 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 556 ; 2.502 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 504 ; 4.107 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : 0.26100 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE BUFFER PH6.5, 16% PEG REMARK 280 8000, 0.23M ZINC ACETATE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.06650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 1 OE1 GLN A 5 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 6 C ASP A 7 N 0.154 REMARK 500 ASP A 7 CG ASP A 7 OD2 0.193 REMARK 500 ASP A 7 C SER A 8 N 0.151 REMARK 500 ASP B 7 CG ASP B 7 OD2 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 7 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 78 32.63 -84.96 REMARK 500 ILE B 90 -85.03 -72.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 29 OD1 REMARK 620 2 ASP A 33 OD2 101.2 REMARK 620 3 HOH A 329 O 86.7 124.9 REMARK 620 4 HOH A 401 O 110.4 91.9 136.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 HOH A 392 O 100.0 REMARK 620 3 ASY B 303 O2 102.0 145.1 REMARK 620 4 ASY B 303 O1 93.5 92.9 59.1 REMARK 620 5 HOH B 440 O 160.7 91.6 75.8 101.3 REMARK 620 6 HOH B 448 O 103.4 102.0 98.9 155.0 58.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 63 O REMARK 620 2 ILE A 81 O 120.3 REMARK 620 3 HOH A 320 O 102.5 110.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASY A 302 O2 REMARK 620 2 ASY A 302 O1 59.3 REMARK 620 3 HOH A 376 O 136.0 91.2 REMARK 620 4 HOH A 397 O 99.3 153.9 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 392 O REMARK 620 2 HOH B 440 O 92.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 440 O REMARK 620 2 HOH B 441 O 83.7 REMARK 620 3 HOH B 448 O 60.6 108.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASY B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MID RELATED DB: PDB REMARK 900 THE ORIGINAL BARLEY LTP1 X-RAY STRUCTURE WITHOUT ANY COVALENT ADDUCT DBREF 3GSH A 1 91 UNP P07597 NLTP1_HORVU 27 117 DBREF 3GSH B 1 91 UNP P07597 NLTP1_HORVU 27 117 SEQRES 1 A 91 LEU ASN CYS GLY GLN VAL ASP SER LYS MET LYS PRO CYS SEQRES 2 A 91 LEU THR TYR VAL GLN GLY GLY PRO GLY PRO SER GLY GLU SEQRES 3 A 91 CYS CYS ASN GLY VAL ARG ASP LEU HIS ASN GLN ALA GLN SEQRES 4 A 91 SER SER GLY ASP ARG GLN THR VAL CYS ASN CYS LEU LYS SEQRES 5 A 91 GLY ILE ALA ARG GLY ILE HIS ASN LEU ASN LEU ASN ASN SEQRES 6 A 91 ALA ALA SER ILE PRO SER LYS CYS ASN VAL ASN VAL PRO SEQRES 7 A 91 TYR THR ILE SER PRO ASP ILE ASP CYS SER ARG ILE TYR SEQRES 1 B 91 LEU ASN CYS GLY GLN VAL ASP SER LYS MET LYS PRO CYS SEQRES 2 B 91 LEU THR TYR VAL GLN GLY GLY PRO GLY PRO SER GLY GLU SEQRES 3 B 91 CYS CYS ASN GLY VAL ARG ASP LEU HIS ASN GLN ALA GLN SEQRES 4 B 91 SER SER GLY ASP ARG GLN THR VAL CYS ASN CYS LEU LYS SEQRES 5 B 91 GLY ILE ALA ARG GLY ILE HIS ASN LEU ASN LEU ASN ASN SEQRES 6 B 91 ALA ALA SER ILE PRO SER LYS CYS ASN VAL ASN VAL PRO SEQRES 7 B 91 TYR THR ILE SER PRO ASP ILE ASP CYS SER ARG ILE TYR HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET NA A 201 1 HET NA A 203 1 HET TFA A 301 7 HET ASY A 302 21 HET ZN B 104 1 HET NA B 202 1 HET TFA B 302 7 HET ASY B 303 21 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM TFA TRIFLUOROACETIC ACID HETNAM ASY (12E)-10-OXOOCTADEC-12-ENOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 6 NA 3(NA 1+) FORMUL 8 TFA 2(C2 H F3 O2) FORMUL 9 ASY 2(C18 H32 O3) FORMUL 14 HOH *205(H2 O) HELIX 1 1 ASN A 2 LYS A 11 1 10 HELIX 2 2 CYS A 13 GLN A 18 1 6 HELIX 3 3 SER A 24 ALA A 38 1 15 HELIX 4 4 SER A 40 ILE A 58 1 19 HELIX 5 5 ASN A 62 ASN A 74 1 13 HELIX 6 6 ASN B 2 LYS B 11 1 10 HELIX 7 7 CYS B 13 GLN B 18 1 6 HELIX 8 8 SER B 24 ALA B 38 1 15 HELIX 9 9 SER B 40 GLY B 57 1 18 HELIX 10 10 ASN B 62 ASN B 74 1 13 SSBOND 1 CYS A 3 CYS A 50 1555 1555 2.02 SSBOND 2 CYS A 13 CYS A 27 1555 1555 2.05 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.04 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.02 SSBOND 5 CYS B 3 CYS B 50 1555 1555 2.06 SSBOND 6 CYS B 13 CYS B 27 1555 1555 2.07 SSBOND 7 CYS B 28 CYS B 73 1555 1555 2.03 SSBOND 8 CYS B 48 CYS B 87 1555 1555 2.04 LINK OD2 ASP A 7 C9 ASY A 302 1555 1555 1.45 LINK OD2 ASP B 7 C9 ASY B 303 1555 1555 1.45 LINK OD1 ASN A 29 ZN ZN A 103 1555 1555 2.22 LINK OD2 ASP A 33 ZN ZN A 103 1555 1555 2.06 LINK NE2 HIS A 35 ZN ZN A 101 1555 1555 2.06 LINK O LEU A 63 NA NA A 201 1555 1555 2.73 LINK O ILE A 81 NA NA A 201 1555 1555 2.69 LINK OD2 ASP A 86 NA NA A 203 1555 1555 2.73 LINK ZN ZN A 101 O HOH A 392 1555 1555 2.20 LINK ZN ZN A 101 O2 ASY B 303 1555 1555 1.97 LINK ZN ZN A 101 O1 ASY B 303 1555 1555 2.31 LINK ZN ZN A 101 O HOH B 440 1555 1555 2.59 LINK ZN ZN A 101 O HOH B 448 1555 1555 1.77 LINK ZN ZN A 102 O2 ASY A 302 1555 1555 1.95 LINK ZN ZN A 102 O1 ASY A 302 1555 1555 2.20 LINK ZN ZN A 102 O HOH A 376 1555 1555 2.37 LINK ZN ZN A 102 O HOH A 397 1555 1555 1.98 LINK ZN ZN A 103 O HOH A 329 1555 1555 2.68 LINK ZN ZN A 103 O HOH A 401 1555 1555 1.98 LINK NA NA A 201 O HOH A 320 1555 1555 2.65 LINK O HOH A 392 ZN ZN B 104 1555 1555 2.54 LINK ZN ZN B 104 O HOH B 440 1555 1555 2.20 LINK NA NA B 202 O HOH B 440 1555 1555 2.16 LINK NA NA B 202 O HOH B 441 1555 1555 2.04 LINK NA NA B 202 O HOH B 448 1555 1555 2.31 CISPEP 1 GLY A 22 PRO A 23 0 -4.90 CISPEP 2 GLY B 22 PRO B 23 0 -0.18 SITE 1 AC1 6 HIS A 35 HOH A 392 ZN B 104 ASY B 303 SITE 2 AC1 6 HOH B 440 HOH B 448 SITE 1 AC2 4 ASY A 302 HOH A 376 HOH A 397 HIS B 35 SITE 1 AC3 4 ASN A 29 ASP A 33 HOH A 329 HOH A 401 SITE 1 AC4 5 LEU A 63 ALA A 67 ILE A 81 SER A 82 SITE 2 AC4 5 HOH A 320 SITE 1 AC5 3 ASP A 86 ASP B 84 HOH B 434 SITE 1 AC6 9 LEU A 34 HIS A 35 ALA A 38 VAL A 47 SITE 2 AC6 9 VAL A 77 PRO A 78 TYR A 79 HOH A 358 SITE 3 AC6 9 HOH A 368 SITE 1 AC7 10 ASP A 7 MET A 10 GLY A 53 ILE A 54 SITE 2 AC7 10 ILE A 58 ZN A 102 HOH A 397 HIS B 35 SITE 3 AC7 10 ASN B 76 HOH B 390 SITE 1 AC8 6 ASP A 84 ZN A 101 HOH A 392 ARG B 56 SITE 2 AC8 6 NA B 202 HOH B 440 SITE 1 AC9 6 ASP A 84 ARG B 56 ZN B 104 HOH B 440 SITE 2 AC9 6 HOH B 441 HOH B 448 SITE 1 BC1 10 LEU B 34 HIS B 35 ALA B 38 VAL B 47 SITE 2 BC1 10 ASN B 76 VAL B 77 PRO B 78 TYR B 79 SITE 3 BC1 10 HOH B 373 HOH B 388 SITE 1 BC2 13 HIS A 35 ASN A 76 ZN A 101 ASP B 7 SITE 2 BC2 13 MET B 10 LYS B 11 GLY B 53 ILE B 54 SITE 3 BC2 13 ILE B 58 ILE B 81 HOH B 423 HOH B 440 SITE 4 BC2 13 HOH B 448 CRYST1 28.740 76.133 39.402 90.00 104.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034795 0.000000 0.008896 0.00000 SCALE2 0.000000 0.013135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026195 0.00000