data_3GSK # _entry.id 3GSK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GSK pdb_00003gsk 10.2210/pdb3gsk/pdb NDB DD0109 ? ? RCSB RCSB052256 ? ? WWPDB D_1000052256 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-02-14 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Experimental preparation' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_site 6 5 'Structure model' entity 7 5 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GSK _pdbx_database_status.recvd_initial_deposition_date 2009-03-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2o1i . unspecified PDB 3GSJ . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zeglis, B.M.' 1 'Pierre, V.C.' 2 'Kaiser, J.T.' 3 'Barton, J.K.' 4 # _citation.id primary _citation.title 'A bulky rhodium complex bound to an adenosine-adenosine DNA mismatch: general architecture of the metalloinsertion binding mode' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 4247 _citation.page_last 4253 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19374348 _citation.pdbx_database_id_DOI 10.1021/bi900194e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeglis, B.M.' 1 ? primary 'Pierre, V.C.' 2 ? primary 'Kaiser, J.T.' 3 ? primary 'Barton, J.K.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3'" 3671.418 2 ? ? ? ? 2 non-polymer syn "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" 669.559 2 ? ? ? ORGANOMETALLIC 3 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 4 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DA)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGAAATTACCG _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" R1C 3 'CACODYLATE ION' CAC 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 R1C non-polymer . "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" ;DELTA-Rhodium(III)- bis-(2,2'-bipyridyl)-5,6-chrysenequinone diimine ; 'C38 H26 N6 Rh 4' 669.559 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DG 2 2 2 DG DG B . n A 1 3 DG 3 3 3 DG DG B . n A 1 4 DA 4 4 4 DA DA B . n A 1 5 DA 5 5 5 DA DA B . n A 1 6 DA 6 6 6 DA DA B . n A 1 7 DT 7 7 7 DT DT B . n A 1 8 DT 8 8 8 DT DT B . n A 1 9 DA 9 9 9 DA DA B . n A 1 10 DC 10 10 10 DC DC B . n A 1 11 DC 11 11 11 DC DC B . n A 1 12 DG 12 12 12 DG DG B . n B 1 1 DC 1 1 1 DC DC A . n B 1 2 DG 2 2 2 DG DG A . n B 1 3 DG 3 3 3 DG DG A . n B 1 4 DA 4 4 4 DA DA A . n B 1 5 DA 5 5 5 DA DA A . n B 1 6 DA 6 6 6 DA DA A . n B 1 7 DT 7 7 7 DT DT A . n B 1 8 DT 8 8 8 DT DT A . n B 1 9 DA 9 9 9 DA DA A . n B 1 10 DC 10 10 10 DC DC A . n B 1 11 DC 11 11 11 DC DC A . n B 1 12 DG 12 12 12 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R1C 1 2001 2001 R1C R1C B . D 3 CAC 1 13 1 CAC CAC B . E 2 R1C 1 2002 2002 R1C R1C A . F 4 HOH 1 14 1 HOH HOH B . F 4 HOH 2 15 15 HOH HOH B . F 4 HOH 3 16 16 HOH HOH B . F 4 HOH 4 17 3 HOH HOH B . F 4 HOH 5 18 18 HOH HOH B . F 4 HOH 6 19 4 HOH HOH B . F 4 HOH 7 20 20 HOH HOH B . F 4 HOH 8 21 21 HOH HOH B . F 4 HOH 9 22 22 HOH HOH B . F 4 HOH 10 23 7 HOH HOH B . F 4 HOH 11 24 24 HOH HOH B . F 4 HOH 12 25 8 HOH HOH B . F 4 HOH 13 26 9 HOH HOH B . F 4 HOH 14 27 27 HOH HOH B . F 4 HOH 15 28 10 HOH HOH B . F 4 HOH 16 29 29 HOH HOH B . F 4 HOH 17 30 30 HOH HOH B . F 4 HOH 18 31 31 HOH HOH B . F 4 HOH 19 32 11 HOH HOH B . F 4 HOH 20 33 33 HOH HOH B . F 4 HOH 21 34 34 HOH HOH B . F 4 HOH 22 35 13 HOH HOH B . F 4 HOH 23 36 36 HOH HOH B . F 4 HOH 24 38 38 HOH HOH B . F 4 HOH 25 39 39 HOH HOH B . F 4 HOH 26 40 40 HOH HOH B . F 4 HOH 27 42 42 HOH HOH B . F 4 HOH 28 44 44 HOH HOH B . F 4 HOH 29 45 45 HOH HOH B . F 4 HOH 30 55 55 HOH HOH B . F 4 HOH 31 56 56 HOH HOH B . F 4 HOH 32 61 61 HOH HOH B . F 4 HOH 33 62 62 HOH HOH B . F 4 HOH 34 63 63 HOH HOH B . F 4 HOH 35 65 65 HOH HOH B . F 4 HOH 36 66 66 HOH HOH B . F 4 HOH 37 67 67 HOH HOH B . F 4 HOH 38 68 68 HOH HOH B . F 4 HOH 39 70 70 HOH HOH B . F 4 HOH 40 72 72 HOH HOH B . F 4 HOH 41 75 75 HOH HOH B . F 4 HOH 42 76 76 HOH HOH B . F 4 HOH 43 80 80 HOH HOH B . F 4 HOH 44 81 81 HOH HOH B . F 4 HOH 45 82 82 HOH HOH B . F 4 HOH 46 83 83 HOH HOH B . F 4 HOH 47 84 84 HOH HOH B . F 4 HOH 48 85 85 HOH HOH B . G 4 HOH 1 13 2 HOH HOH A . G 4 HOH 2 14 14 HOH HOH A . G 4 HOH 3 15 5 HOH HOH A . G 4 HOH 4 16 6 HOH HOH A . G 4 HOH 5 17 17 HOH HOH A . G 4 HOH 6 18 12 HOH HOH A . G 4 HOH 7 19 19 HOH HOH A . G 4 HOH 8 23 23 HOH HOH A . G 4 HOH 9 25 25 HOH HOH A . G 4 HOH 10 26 26 HOH HOH A . G 4 HOH 11 28 28 HOH HOH A . G 4 HOH 12 32 32 HOH HOH A . G 4 HOH 13 35 35 HOH HOH A . G 4 HOH 14 37 37 HOH HOH A . G 4 HOH 15 41 41 HOH HOH A . G 4 HOH 16 43 43 HOH HOH A . G 4 HOH 17 46 46 HOH HOH A . G 4 HOH 18 47 47 HOH HOH A . G 4 HOH 19 48 48 HOH HOH A . G 4 HOH 20 49 49 HOH HOH A . G 4 HOH 21 50 50 HOH HOH A . G 4 HOH 22 51 51 HOH HOH A . G 4 HOH 23 52 52 HOH HOH A . G 4 HOH 24 53 53 HOH HOH A . G 4 HOH 25 54 54 HOH HOH A . G 4 HOH 26 57 57 HOH HOH A . G 4 HOH 27 58 58 HOH HOH A . G 4 HOH 28 59 59 HOH HOH A . G 4 HOH 29 60 60 HOH HOH A . G 4 HOH 30 64 64 HOH HOH A . G 4 HOH 31 69 69 HOH HOH A . G 4 HOH 32 71 71 HOH HOH A . G 4 HOH 33 73 73 HOH HOH A . G 4 HOH 34 74 74 HOH HOH A . G 4 HOH 35 77 77 HOH HOH A . G 4 HOH 36 78 78 HOH HOH A . G 4 HOH 37 79 79 HOH HOH A . G 4 HOH 38 86 86 HOH HOH A . G 4 HOH 39 87 87 HOH HOH A . G 4 HOH 40 88 88 HOH HOH A . G 4 HOH 41 89 89 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language Blu-Ice 'data collection' . ? 1 ? ? ? ? SHELXD phasing . ? 2 ? ? ? ? PHENIX refinement '(phenix.refine)' ? 3 ? ? ? ? MOSFLM 'data reduction' . ? 4 ? ? ? ? SCALA 'data scaling' . ? 5 ? ? ? ? # _cell.entry_id 3GSK _cell.length_a 48.337 _cell.length_b 48.337 _cell.length_c 69.505 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GSK _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3GSK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;20 mM sodium cacodylate, 6 mM spermine, 4HCl,40 mM NaCl, 5% 2-methyl-2,4-pentanediol, pH 7, VAPOR DIFFUSION ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0046 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0046 # _reflns.entry_id 3GSK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35 _reflns.d_resolution_high 1.6 _reflns.number_obs 22677 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.499 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GSK _refine.ls_number_reflns_obs 22677 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.11 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.271 _refine.ls_d_res_high 1.600 _refine.ls_percent_reflns_obs 94.66 _refine.ls_R_factor_obs 0.1859 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1838 _refine.ls_R_factor_R_free 0.2274 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.99 _refine.ls_number_reflns_R_free 1131 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.429 _refine.solvent_model_param_bsol 76.070 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 95 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 672 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 20.271 # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.600 1.6729 2541 0.2546 89.00 0.3126 . . 128 . . . . 'X-RAY DIFFRACTION' . 1.6729 1.7610 2554 0.2179 91.00 0.2959 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.7610 1.8713 2627 0.1892 92.00 0.2229 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.8713 2.0156 2690 0.1878 93.00 0.2682 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.0156 2.2183 2685 0.1909 96.00 0.2422 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.2183 2.5387 2791 0.1738 98.00 0.2202 . . 165 . . . . 'X-RAY DIFFRACTION' . 2.5387 3.1965 2798 0.1881 99.00 0.2720 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.1965 20.2723 2860 0.1711 100.00 0.1821 . . 130 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3GSK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3GSK _struct.title 'A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GSK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA MISMATCH, METALLOINTERCALATOR, DNA RECOGNITION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GSK _struct_ref.pdbx_db_accession 3GSK _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CGGAAATTACCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GSK B 1 ? 12 ? 3GSK 1 ? 12 ? 1 12 2 1 3GSK A 1 ? 12 ? 3GSK 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 1 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 1 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 1 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 2 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 3 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 3 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 3 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 5 A DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 5 A DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 6 A DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 6 A DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 7 A DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 7 A DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 8 A DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 8 A DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 10 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 10 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 10 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 12 A DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 12 A DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 12 A DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B R1C 2001 ? 8 'BINDING SITE FOR RESIDUE R1C B 2001' AC2 Software A R1C 2002 ? 8 'BINDING SITE FOR RESIDUE R1C A 2002' AC3 Software B CAC 13 ? 1 'BINDING SITE FOR RESIDUE CAC B 13' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DA B 4 ? DA A 4 . ? 5_665 ? 2 AC1 8 DT B 8 ? DT A 8 . ? 1_555 ? 3 AC1 8 DA B 9 ? DA A 9 . ? 1_555 ? 4 AC1 8 DC B 10 ? DC A 10 . ? 1_555 ? 5 AC1 8 DC B 11 ? DC A 11 . ? 1_555 ? 6 AC1 8 DG A 3 ? DG B 3 . ? 1_555 ? 7 AC1 8 DA A 5 ? DA B 5 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH B 31 . ? 1_555 ? 9 AC2 8 DG B 3 ? DG A 3 . ? 1_555 ? 10 AC2 8 DA B 5 ? DA A 5 . ? 1_555 ? 11 AC2 8 HOH G . ? HOH A 49 . ? 1_555 ? 12 AC2 8 DA A 4 ? DA B 4 . ? 5_565 ? 13 AC2 8 DT A 8 ? DT B 8 . ? 1_555 ? 14 AC2 8 DA A 9 ? DA B 9 . ? 1_555 ? 15 AC2 8 DC A 10 ? DC B 10 . ? 1_555 ? 16 AC2 8 DC A 11 ? DC B 11 . ? 1_555 ? 17 AC3 1 DG A 12 ? DG B 12 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DG 3 ? ? N7 B DG 3 ? ? 1.426 1.388 0.038 0.006 N 2 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.362 1.419 -0.057 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 102.42 108.00 -5.58 0.70 N 2 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? "C2'" B DG 3 ? ? 111.08 106.80 4.28 0.50 N 3 1 N1 B DG 3 ? ? C2 B DG 3 ? ? N3 B DG 3 ? ? 127.78 123.90 3.88 0.60 N 4 1 C2 B DG 3 ? ? N3 B DG 3 ? ? C4 B DG 3 ? ? 108.13 111.90 -3.77 0.50 N 5 1 "C3'" B DA 5 ? ? "C2'" B DA 5 ? ? "C1'" B DA 5 ? ? 96.58 102.40 -5.82 0.80 N 6 1 N1 B DA 5 ? ? C6 B DA 5 ? ? N6 B DA 5 ? ? 123.80 118.60 5.20 0.60 N 7 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 103.07 108.00 -4.93 0.70 N 8 1 C5 B DA 6 ? ? C6 B DA 6 ? ? N1 B DA 6 ? ? 114.69 117.70 -3.01 0.50 N 9 1 N1 B DA 6 ? ? C6 B DA 6 ? ? N6 B DA 6 ? ? 122.46 118.60 3.86 0.60 N 10 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 103.00 108.00 -5.00 0.70 N 11 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 99.23 108.00 -8.77 0.70 N 12 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? "C2'" B DC 10 ? ? 110.09 106.80 3.29 0.50 N 13 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 96.96 108.00 -11.04 0.70 N 14 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.95 104.50 -2.55 0.40 N 15 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.39 108.30 2.09 0.30 N 16 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 102.36 108.00 -5.64 0.70 N 17 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 122.38 118.60 3.78 0.60 N 18 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 124.21 118.60 5.61 0.60 N 19 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 114.70 117.70 -3.00 0.50 N 20 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 122.27 118.60 3.67 0.60 N 21 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.26 108.00 -6.74 0.70 N 22 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 123.14 118.60 4.54 0.60 N 23 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 103.58 108.00 -4.42 0.70 N 24 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 103.22 108.00 -4.78 0.70 N 25 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP1 A DC 11 ? ? 98.64 105.70 -7.06 0.90 N 26 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 100.30 108.00 -7.70 0.70 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CAC AS AS N N 1 CAC O1 O N N 2 CAC O2 O N N 3 CAC C1 C N N 4 CAC C2 C N N 5 CAC H11 H N N 6 CAC H12 H N N 7 CAC H13 H N N 8 CAC H21 H N N 9 CAC H22 H N N 10 CAC H23 H N N 11 DA OP3 O N N 12 DA P P N N 13 DA OP1 O N N 14 DA OP2 O N N 15 DA "O5'" O N N 16 DA "C5'" C N N 17 DA "C4'" C N R 18 DA "O4'" O N N 19 DA "C3'" C N S 20 DA "O3'" O N N 21 DA "C2'" C N N 22 DA "C1'" C N R 23 DA N9 N Y N 24 DA C8 C Y N 25 DA N7 N Y N 26 DA C5 C Y N 27 DA C6 C Y N 28 DA N6 N N N 29 DA N1 N Y N 30 DA C2 C Y N 31 DA N3 N Y N 32 DA C4 C Y N 33 DA HOP3 H N N 34 DA HOP2 H N N 35 DA "H5'" H N N 36 DA "H5''" H N N 37 DA "H4'" H N N 38 DA "H3'" H N N 39 DA "HO3'" H N N 40 DA "H2'" H N N 41 DA "H2''" H N N 42 DA "H1'" H N N 43 DA H8 H N N 44 DA H61 H N N 45 DA H62 H N N 46 DA H2 H N N 47 DC OP3 O N N 48 DC P P N N 49 DC OP1 O N N 50 DC OP2 O N N 51 DC "O5'" O N N 52 DC "C5'" C N N 53 DC "C4'" C N R 54 DC "O4'" O N N 55 DC "C3'" C N S 56 DC "O3'" O N N 57 DC "C2'" C N N 58 DC "C1'" C N R 59 DC N1 N N N 60 DC C2 C N N 61 DC O2 O N N 62 DC N3 N N N 63 DC C4 C N N 64 DC N4 N N N 65 DC C5 C N N 66 DC C6 C N N 67 DC HOP3 H N N 68 DC HOP2 H N N 69 DC "H5'" H N N 70 DC "H5''" H N N 71 DC "H4'" H N N 72 DC "H3'" H N N 73 DC "HO3'" H N N 74 DC "H2'" H N N 75 DC "H2''" H N N 76 DC "H1'" H N N 77 DC H41 H N N 78 DC H42 H N N 79 DC H5 H N N 80 DC H6 H N N 81 DG OP3 O N N 82 DG P P N N 83 DG OP1 O N N 84 DG OP2 O N N 85 DG "O5'" O N N 86 DG "C5'" C N N 87 DG "C4'" C N R 88 DG "O4'" O N N 89 DG "C3'" C N S 90 DG "O3'" O N N 91 DG "C2'" C N N 92 DG "C1'" C N R 93 DG N9 N Y N 94 DG C8 C Y N 95 DG N7 N Y N 96 DG C5 C Y N 97 DG C6 C N N 98 DG O6 O N N 99 DG N1 N N N 100 DG C2 C N N 101 DG N2 N N N 102 DG N3 N N N 103 DG C4 C Y N 104 DG HOP3 H N N 105 DG HOP2 H N N 106 DG "H5'" H N N 107 DG "H5''" H N N 108 DG "H4'" H N N 109 DG "H3'" H N N 110 DG "HO3'" H N N 111 DG "H2'" H N N 112 DG "H2''" H N N 113 DG "H1'" H N N 114 DG H8 H N N 115 DG H1 H N N 116 DG H21 H N N 117 DG H22 H N N 118 DT OP3 O N N 119 DT P P N N 120 DT OP1 O N N 121 DT OP2 O N N 122 DT "O5'" O N N 123 DT "C5'" C N N 124 DT "C4'" C N R 125 DT "O4'" O N N 126 DT "C3'" C N S 127 DT "O3'" O N N 128 DT "C2'" C N N 129 DT "C1'" C N R 130 DT N1 N N N 131 DT C2 C N N 132 DT O2 O N N 133 DT N3 N N N 134 DT C4 C N N 135 DT O4 O N N 136 DT C5 C N N 137 DT C7 C N N 138 DT C6 C N N 139 DT HOP3 H N N 140 DT HOP2 H N N 141 DT "H5'" H N N 142 DT "H5''" H N N 143 DT "H4'" H N N 144 DT "H3'" H N N 145 DT "HO3'" H N N 146 DT "H2'" H N N 147 DT "H2''" H N N 148 DT "H1'" H N N 149 DT H3 H N N 150 DT H71 H N N 151 DT H72 H N N 152 DT H73 H N N 153 DT H6 H N N 154 HOH O O N N 155 HOH H1 H N N 156 HOH H2 H N N 157 R1C RH RH N N 158 R1C N5 N N N 159 R1C N6 N N N 160 R1C C21 C Y N 161 R1C C22 C Y N 162 R1C C23 C Y N 163 R1C C24 C Y N 164 R1C C25 C Y N 165 R1C C26 C Y N 166 R1C C27 C Y N 167 R1C C28 C Y N 168 R1C C29 C Y N 169 R1C C30 C Y N 170 R1C C31 C Y N 171 R1C C32 C Y N 172 R1C C33 C Y N 173 R1C C34 C Y N 174 R1C C35 C Y N 175 R1C C36 C Y N 176 R1C C37 C Y N 177 R1C C38 C Y N 178 R1C N1 N Y N 179 R1C N2 N Y N 180 R1C N3 N Y N 181 R1C N4 N Y N 182 R1C C1 C Y N 183 R1C C2 C Y N 184 R1C C3 C Y N 185 R1C C4 C Y N 186 R1C C5 C Y N 187 R1C C6 C Y N 188 R1C C7 C Y N 189 R1C C8 C Y N 190 R1C C9 C Y N 191 R1C C10 C Y N 192 R1C C11 C Y N 193 R1C C12 C Y N 194 R1C C13 C Y N 195 R1C C14 C Y N 196 R1C C15 C Y N 197 R1C C16 C Y N 198 R1C C17 C Y N 199 R1C C18 C Y N 200 R1C C19 C Y N 201 R1C C20 C Y N 202 R1C H25 H N N 203 R1C H26 H N N 204 R1C H27 H N N 205 R1C H28 H N N 206 R1C H30 H N N 207 R1C H31 H N N 208 R1C H34 H N N 209 R1C H35 H N N 210 R1C H36 H N N 211 R1C H37 H N N 212 R1C H1 H N N 213 R1C H2 H N N 214 R1C H3 H N N 215 R1C H4 H N N 216 R1C H7 H N N 217 R1C H8 H N N 218 R1C H9 H N N 219 R1C H10 H N N 220 R1C H11 H N N 221 R1C H12 H N N 222 R1C H13 H N N 223 R1C H14 H N N 224 R1C H17 H N N 225 R1C H18 H N N 226 R1C H19 H N N 227 R1C H20 H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CAC AS O1 doub N N 1 CAC AS O2 sing N N 2 CAC AS C1 sing N N 3 CAC AS C2 sing N N 4 CAC C1 H11 sing N N 5 CAC C1 H12 sing N N 6 CAC C1 H13 sing N N 7 CAC C2 H21 sing N N 8 CAC C2 H22 sing N N 9 CAC C2 H23 sing N N 10 DA OP3 P sing N N 11 DA OP3 HOP3 sing N N 12 DA P OP1 doub N N 13 DA P OP2 sing N N 14 DA P "O5'" sing N N 15 DA OP2 HOP2 sing N N 16 DA "O5'" "C5'" sing N N 17 DA "C5'" "C4'" sing N N 18 DA "C5'" "H5'" sing N N 19 DA "C5'" "H5''" sing N N 20 DA "C4'" "O4'" sing N N 21 DA "C4'" "C3'" sing N N 22 DA "C4'" "H4'" sing N N 23 DA "O4'" "C1'" sing N N 24 DA "C3'" "O3'" sing N N 25 DA "C3'" "C2'" sing N N 26 DA "C3'" "H3'" sing N N 27 DA "O3'" "HO3'" sing N N 28 DA "C2'" "C1'" sing N N 29 DA "C2'" "H2'" sing N N 30 DA "C2'" "H2''" sing N N 31 DA "C1'" N9 sing N N 32 DA "C1'" "H1'" sing N N 33 DA N9 C8 sing Y N 34 DA N9 C4 sing Y N 35 DA C8 N7 doub Y N 36 DA C8 H8 sing N N 37 DA N7 C5 sing Y N 38 DA C5 C6 sing Y N 39 DA C5 C4 doub Y N 40 DA C6 N6 sing N N 41 DA C6 N1 doub Y N 42 DA N6 H61 sing N N 43 DA N6 H62 sing N N 44 DA N1 C2 sing Y N 45 DA C2 N3 doub Y N 46 DA C2 H2 sing N N 47 DA N3 C4 sing Y N 48 DC OP3 P sing N N 49 DC OP3 HOP3 sing N N 50 DC P OP1 doub N N 51 DC P OP2 sing N N 52 DC P "O5'" sing N N 53 DC OP2 HOP2 sing N N 54 DC "O5'" "C5'" sing N N 55 DC "C5'" "C4'" sing N N 56 DC "C5'" "H5'" sing N N 57 DC "C5'" "H5''" sing N N 58 DC "C4'" "O4'" sing N N 59 DC "C4'" "C3'" sing N N 60 DC "C4'" "H4'" sing N N 61 DC "O4'" "C1'" sing N N 62 DC "C3'" "O3'" sing N N 63 DC "C3'" "C2'" sing N N 64 DC "C3'" "H3'" sing N N 65 DC "O3'" "HO3'" sing N N 66 DC "C2'" "C1'" sing N N 67 DC "C2'" "H2'" sing N N 68 DC "C2'" "H2''" sing N N 69 DC "C1'" N1 sing N N 70 DC "C1'" "H1'" sing N N 71 DC N1 C2 sing N N 72 DC N1 C6 sing N N 73 DC C2 O2 doub N N 74 DC C2 N3 sing N N 75 DC N3 C4 doub N N 76 DC C4 N4 sing N N 77 DC C4 C5 sing N N 78 DC N4 H41 sing N N 79 DC N4 H42 sing N N 80 DC C5 C6 doub N N 81 DC C5 H5 sing N N 82 DC C6 H6 sing N N 83 DG OP3 P sing N N 84 DG OP3 HOP3 sing N N 85 DG P OP1 doub N N 86 DG P OP2 sing N N 87 DG P "O5'" sing N N 88 DG OP2 HOP2 sing N N 89 DG "O5'" "C5'" sing N N 90 DG "C5'" "C4'" sing N N 91 DG "C5'" "H5'" sing N N 92 DG "C5'" "H5''" sing N N 93 DG "C4'" "O4'" sing N N 94 DG "C4'" "C3'" sing N N 95 DG "C4'" "H4'" sing N N 96 DG "O4'" "C1'" sing N N 97 DG "C3'" "O3'" sing N N 98 DG "C3'" "C2'" sing N N 99 DG "C3'" "H3'" sing N N 100 DG "O3'" "HO3'" sing N N 101 DG "C2'" "C1'" sing N N 102 DG "C2'" "H2'" sing N N 103 DG "C2'" "H2''" sing N N 104 DG "C1'" N9 sing N N 105 DG "C1'" "H1'" sing N N 106 DG N9 C8 sing Y N 107 DG N9 C4 sing Y N 108 DG C8 N7 doub Y N 109 DG C8 H8 sing N N 110 DG N7 C5 sing Y N 111 DG C5 C6 sing N N 112 DG C5 C4 doub Y N 113 DG C6 O6 doub N N 114 DG C6 N1 sing N N 115 DG N1 C2 sing N N 116 DG N1 H1 sing N N 117 DG C2 N2 sing N N 118 DG C2 N3 doub N N 119 DG N2 H21 sing N N 120 DG N2 H22 sing N N 121 DG N3 C4 sing N N 122 DT OP3 P sing N N 123 DT OP3 HOP3 sing N N 124 DT P OP1 doub N N 125 DT P OP2 sing N N 126 DT P "O5'" sing N N 127 DT OP2 HOP2 sing N N 128 DT "O5'" "C5'" sing N N 129 DT "C5'" "C4'" sing N N 130 DT "C5'" "H5'" sing N N 131 DT "C5'" "H5''" sing N N 132 DT "C4'" "O4'" sing N N 133 DT "C4'" "C3'" sing N N 134 DT "C4'" "H4'" sing N N 135 DT "O4'" "C1'" sing N N 136 DT "C3'" "O3'" sing N N 137 DT "C3'" "C2'" sing N N 138 DT "C3'" "H3'" sing N N 139 DT "O3'" "HO3'" sing N N 140 DT "C2'" "C1'" sing N N 141 DT "C2'" "H2'" sing N N 142 DT "C2'" "H2''" sing N N 143 DT "C1'" N1 sing N N 144 DT "C1'" "H1'" sing N N 145 DT N1 C2 sing N N 146 DT N1 C6 sing N N 147 DT C2 O2 doub N N 148 DT C2 N3 sing N N 149 DT N3 C4 sing N N 150 DT N3 H3 sing N N 151 DT C4 O4 doub N N 152 DT C4 C5 sing N N 153 DT C5 C7 sing N N 154 DT C5 C6 doub N N 155 DT C7 H71 sing N N 156 DT C7 H72 sing N N 157 DT C7 H73 sing N N 158 DT C6 H6 sing N N 159 HOH O H1 sing N N 160 HOH O H2 sing N N 161 R1C C27 C26 doub Y N 162 R1C C27 C28 sing Y N 163 R1C C2 C3 doub Y N 164 R1C C2 C1 sing Y N 165 R1C C26 C25 sing Y N 166 R1C C28 C29 doub Y N 167 R1C C3 C4 sing Y N 168 R1C C12 C11 doub Y N 169 R1C C12 C13 sing Y N 170 R1C C1 N1 doub Y N 171 R1C C25 C24 doub Y N 172 R1C C29 C24 sing Y N 173 R1C C29 C30 sing Y N 174 R1C C11 N3 sing Y N 175 R1C C4 C5 doub Y N 176 R1C C13 C14 doub Y N 177 R1C C24 C23 sing Y N 178 R1C C30 C31 doub Y N 179 R1C N1 C5 sing Y N 180 R1C N1 RH sing N N 181 R1C C5 C6 sing Y N 182 R1C N6 C22 doub N N 183 R1C N6 RH sing N N 184 R1C N3 C15 doub Y N 185 R1C N3 RH sing N N 186 R1C C23 C22 sing Y N 187 R1C C23 C32 doub Y N 188 R1C C14 C15 sing Y N 189 R1C C31 C32 sing Y N 190 R1C C22 C21 sing Y N 191 R1C C32 C33 sing Y N 192 R1C C15 C16 sing Y N 193 R1C RH N2 sing N N 194 R1C RH N5 sing N N 195 R1C RH N4 sing N N 196 R1C C6 N2 doub Y N 197 R1C C6 C7 sing Y N 198 R1C C21 N5 doub N N 199 R1C C21 C38 sing Y N 200 R1C N2 C10 sing Y N 201 R1C C33 C38 doub Y N 202 R1C C33 C34 sing Y N 203 R1C C7 C8 doub Y N 204 R1C C38 C37 sing Y N 205 R1C C16 N4 doub Y N 206 R1C C16 C17 sing Y N 207 R1C C34 C35 doub Y N 208 R1C N4 C20 sing Y N 209 R1C C10 C9 doub Y N 210 R1C C8 C9 sing Y N 211 R1C C17 C18 doub Y N 212 R1C C37 C36 doub Y N 213 R1C C35 C36 sing Y N 214 R1C C20 C19 doub Y N 215 R1C C18 C19 sing Y N 216 R1C C25 H25 sing N N 217 R1C C26 H26 sing N N 218 R1C C27 H27 sing N N 219 R1C C28 H28 sing N N 220 R1C C30 H30 sing N N 221 R1C C31 H31 sing N N 222 R1C C34 H34 sing N N 223 R1C C35 H35 sing N N 224 R1C C36 H36 sing N N 225 R1C C37 H37 sing N N 226 R1C C1 H1 sing N N 227 R1C C2 H2 sing N N 228 R1C C3 H3 sing N N 229 R1C C4 H4 sing N N 230 R1C C7 H7 sing N N 231 R1C C8 H8 sing N N 232 R1C C9 H9 sing N N 233 R1C C10 H10 sing N N 234 R1C C11 H11 sing N N 235 R1C C12 H12 sing N N 236 R1C C13 H13 sing N N 237 R1C C14 H14 sing N N 238 R1C C17 H17 sing N N 239 R1C C18 H18 sing N N 240 R1C C19 H19 sing N N 241 R1C C20 H20 sing N N 242 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GSK 'b-form double helix' 3GSK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.121 -0.135 0.931 -9.858 -2.464 -2.847 1 B_DC1:DG12_A B 1 ? A 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.239 -0.139 -0.037 -0.287 1.145 -3.841 2 B_DG2:DC11_A B 2 ? A 11 ? 19 1 1 A DG 3 1_555 B DC 10 1_555 -0.397 -0.135 0.597 15.624 -7.185 -1.367 3 B_DG3:DC10_A B 3 ? A 10 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.061 -0.130 0.020 -8.577 7.212 1.518 4 B_DA5:DT8_A B 5 ? A 8 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.141 -0.054 0.142 -0.058 -8.277 3.224 5 B_DA6:DT7_A B 6 ? A 7 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.045 -0.020 0.017 -0.770 -8.023 1.128 6 B_DT7:DA6_A B 7 ? A 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.141 -0.148 0.155 5.844 9.441 1.741 7 B_DT8:DA5_A B 8 ? A 5 ? 20 1 1 A DC 10 1_555 B DG 3 1_555 0.367 -0.136 0.588 -18.841 -5.746 -0.556 8 B_DC10:DG3_A B 10 ? A 3 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.169 -0.132 0.093 -3.862 2.067 -0.490 9 B_DC11:DG2_A B 11 ? A 2 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.273 -0.118 0.421 6.209 -5.328 0.689 10 B_DG12:DC1_A B 12 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.794 2.201 3.405 12.068 -1.620 37.549 3.469 0.346 3.397 -2.439 -18.172 39.406 1 BB_DC1DG2:DC11DG12_AA B 1 ? A 12 ? B 2 ? A 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DG 3 1_555 B DC 10 1_555 -0.302 2.696 3.180 -6.136 5.670 34.289 3.570 -0.454 3.566 9.444 10.220 35.262 2 BB_DG2DG3:DC10DC11_AA B 2 ? A 11 ? B 3 ? A 10 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -1.311 1.189 3.342 -4.692 3.803 37.562 1.310 1.377 3.573 5.859 7.229 38.028 3 BB_DA5DA6:DT7DT8_AA B 5 ? A 8 ? B 6 ? A 7 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.004 -0.083 3.355 1.295 -0.728 29.635 -0.004 0.287 3.353 -1.423 -2.530 29.672 4 BB_DA6DT7:DA6DT7_AA B 6 ? A 7 ? B 7 ? A 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 1.328 1.025 3.377 2.213 5.609 36.107 0.809 -1.789 3.564 8.972 -3.541 36.590 5 BB_DT7DT8:DA5DA6_AA B 7 ? A 6 ? B 8 ? A 5 ? 1 A DC 10 1_555 B DG 3 1_555 A DC 11 1_555 B DG 2 1_555 0.413 2.681 3.282 4.663 6.524 34.510 3.365 0.067 3.733 10.816 -7.730 35.402 6 BB_DC10DC11:DG2DG3_AA B 10 ? A 3 ? B 11 ? A 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.946 2.464 3.225 -8.214 2.122 37.323 3.485 0.372 3.478 3.264 12.635 38.242 7 BB_DC11DG12:DC1DG2_AA B 11 ? A 2 ? B 12 ? A 1 ? # _atom_sites.entry_id 3GSK _atom_sites.fract_transf_matrix[1][1] 0.020688 _atom_sites.fract_transf_matrix[1][2] 0.011944 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023889 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014388 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C H N O P RH # loop_