data_3GSP # _entry.id 3GSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GSP pdb_00003gsp 10.2210/pdb3gsp/pdb WWPDB D_1000178991 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GSP _pdbx_database_status.recvd_initial_deposition_date 1997-12-02 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zegers, I.' 1 'Wyns, L.' 2 # _citation.id primary _citation.title 'Hydrolysis of a slow cyclic thiophosphate substrate of RNase T1 analyzed by time-resolved crystallography.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 5 _citation.page_first 280 _citation.page_last 283 _citation.year 1998 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9546218 _citation.pdbx_database_id_DOI 10.1038/nsb0498-280 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zegers, I.' 1 ? primary 'Loris, R.' 2 ? primary 'Dehollander, G.' 3 ? primary 'Fattah Haikal, A.' 4 ? primary 'Poortmans, F.' 5 ? primary 'Steyaert, J.' 6 ? primary 'Wyns, L.' 7 ? # _cell.entry_id 3GSP _cell.length_a 48.280 _cell.length_b 51.110 _cell.length_c 40.550 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GSP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RIBONUCLEASE T1' 11094.694 1 3.1.27.3 ? ? ;COMPLEX WITH GUANOSINE 2',3' CYCLIC PHOSPHOROTHIOATE AND 3'GMP ; 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 361.271 1 ? ? ? ? 4 non-polymer syn "GUANOSINE-3'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 5 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNASE T1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT ; _entity_poly.pdbx_seq_one_letter_code_can ;ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 ASP n 1 4 TYR n 1 5 THR n 1 6 CYS n 1 7 GLY n 1 8 SER n 1 9 ASN n 1 10 CYS n 1 11 TYR n 1 12 SER n 1 13 SER n 1 14 SER n 1 15 ASP n 1 16 VAL n 1 17 SER n 1 18 THR n 1 19 ALA n 1 20 GLN n 1 21 ALA n 1 22 ALA n 1 23 GLY n 1 24 TYR n 1 25 LYS n 1 26 LEU n 1 27 HIS n 1 28 GLU n 1 29 ASP n 1 30 GLY n 1 31 GLU n 1 32 THR n 1 33 VAL n 1 34 GLY n 1 35 SER n 1 36 ASN n 1 37 SER n 1 38 TYR n 1 39 PRO n 1 40 HIS n 1 41 LYS n 1 42 TYR n 1 43 ASN n 1 44 ASN n 1 45 TYR n 1 46 GLU n 1 47 GLY n 1 48 PHE n 1 49 ASP n 1 50 PHE n 1 51 SER n 1 52 VAL n 1 53 SER n 1 54 SER n 1 55 PRO n 1 56 TYR n 1 57 TYR n 1 58 GLU n 1 59 TRP n 1 60 PRO n 1 61 ILE n 1 62 LEU n 1 63 SER n 1 64 SER n 1 65 GLY n 1 66 ASP n 1 67 VAL n 1 68 TYR n 1 69 SER n 1 70 GLY n 1 71 GLY n 1 72 SER n 1 73 PRO n 1 74 GLY n 1 75 ALA n 1 76 ASP n 1 77 ARG n 1 78 VAL n 1 79 VAL n 1 80 PHE n 1 81 ASN n 1 82 GLU n 1 83 ASN n 1 84 ASN n 1 85 GLN n 1 86 LEU n 1 87 ALA n 1 88 GLY n 1 89 VAL n 1 90 ILE n 1 91 THR n 1 92 HIS n 1 93 THR n 1 94 GLY n 1 95 ALA n 1 96 SER n 1 97 GLY n 1 98 ASN n 1 99 ASN n 1 100 PHE n 1 101 VAL n 1 102 GLU n 1 103 CYS n 1 104 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aspergillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aspergillus oryzae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5062 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNT1_ASPOR _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00651 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKKTAIAIAVALAGFATVAQAACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEW PILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GSP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00651 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3GP non-polymer . "GUANOSINE-3'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SGP non-polymer . "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" ? 'C10 H12 N5 O6 P S' 361.271 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GSP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.86 _exptl_crystal.density_percent_sol 35.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20 MM NAAC PH 4.2 2 MM CACL2 55 % MPD' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3GSP _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 7964 _reflns.number_all ? _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 31.6 _reflns.B_iso_Wilson_estimate 18.3 _reflns.pdbx_redundancy 7.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 92.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.134 _reflns_shell.meanI_over_sigI_obs 15. _reflns_shell.pdbx_redundancy 6. _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GSP _refine.ls_number_reflns_obs 7866 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1000000. _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_obs 0.155 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.155 _refine.ls_R_factor_R_free 0.209 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 808 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 21.5 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1RGA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 781 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 954 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.07 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.942 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.97 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.536 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.9 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 838 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 92.7 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19X.PRO TOPH19X.PRO 'X-RAY DIFFRACTION' 2 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' # _struct.entry_id 3GSP _struct.title ;RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS + 3'-GMP, 4 DAYS ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GSP _struct_keywords.pdbx_keywords ENDORIBONUCLEASE _struct_keywords.text 'HYDROLASE, ENDORIBONUCLEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id A _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 13 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 29 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 13 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 29 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 2 A CYS 10 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 6 A CYS 103 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc1 metalc ? ? A ASP 15 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 15 A CA 107 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc2 metalc ? ? A ASP 15 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 15 A CA 107 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 107 A HOH 126 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 107 A HOH 149 1_555 ? ? ? ? ? ? ? 2.718 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 107 A HOH 157 1_555 ? ? ? ? ? ? ? 2.452 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 107 A HOH 162 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 107 A HOH 181 1_555 ? ? ? ? ? ? ? 2.186 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 A . ? TYR 38 A PRO 39 A ? PRO 39 A 1 -0.34 2 SER 54 A . ? SER 54 A PRO 55 A ? PRO 55 A 1 0.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 TYR A 4 ? CYS A 6 ? TYR A 4 CYS A 6 S1 2 ASN A 9 ? SER A 12 ? ASN A 9 SER A 12 S2 1 PRO A 39 ? TYR A 42 ? PRO A 39 TYR A 42 S2 2 PRO A 55 ? LEU A 62 ? PRO A 55 LEU A 62 S2 3 ASP A 76 ? ASN A 81 ? ASP A 76 ASN A 81 S2 4 GLN A 85 ? THR A 91 ? GLN A 85 THR A 91 S2 5 PHE A 100 ? CYS A 103 ? PHE A 100 CYS A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 N TYR A 4 ? N TYR A 4 O TYR A 11 ? O TYR A 11 S2 1 2 N HIS A 40 ? N HIS A 40 O GLU A 58 ? O GLU A 58 S2 2 3 N TRP A 59 ? N TRP A 59 O VAL A 78 ? O VAL A 78 S2 3 4 N ARG A 77 ? N ARG A 77 O ILE A 90 ? O ILE A 90 S2 4 5 O THR A 91 ? O THR A 91 N VAL A 101 ? N VAL A 101 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAT Unknown ? ? ? ? 5 'ACTIVE SITE.' BI1 Unknown ? ? ? ? 5 SITE. CAL Unknown ? ? ? ? 1 SITE. AC1 Software A CA 107 ? 6 'BINDING SITE FOR RESIDUE CA A 107' AC2 Software A SGP 105 ? 14 'BINDING SITE FOR RESIDUE SGP A 105' AC3 Software A 3GP 106 ? 14 'BINDING SITE FOR RESIDUE 3GP A 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 5 TYR A 38 ? TYR A 38 . ? 1_555 ? 2 CAT 5 HIS A 40 ? HIS A 40 . ? 1_555 ? 3 CAT 5 GLU A 58 ? GLU A 58 . ? 1_555 ? 4 CAT 5 ARG A 77 ? ARG A 77 . ? 1_555 ? 5 CAT 5 HIS A 92 ? HIS A 92 . ? 1_555 ? 6 BI1 5 TYR A 42 ? TYR A 42 . ? 1_555 ? 7 BI1 5 ASN A 43 ? ASN A 43 . ? 1_555 ? 8 BI1 5 ASN A 44 ? ASN A 44 . ? 1_555 ? 9 BI1 5 TYR A 45 ? TYR A 45 . ? 1_555 ? 10 BI1 5 GLU A 46 ? GLU A 46 . ? 1_555 ? 11 CAL 1 ASP A 15 ? ASP A 15 . ? 1_555 ? 12 AC1 6 ASP A 15 ? ASP A 15 . ? 1_555 ? 13 AC1 6 HOH E . ? HOH A 126 . ? 1_555 ? 14 AC1 6 HOH E . ? HOH A 149 . ? 1_555 ? 15 AC1 6 HOH E . ? HOH A 157 . ? 1_555 ? 16 AC1 6 HOH E . ? HOH A 162 . ? 1_555 ? 17 AC1 6 HOH E . ? HOH A 181 . ? 1_555 ? 18 AC2 14 TYR A 38 ? TYR A 38 . ? 1_555 ? 19 AC2 14 LYS A 41 ? LYS A 41 . ? 1_555 ? 20 AC2 14 TYR A 42 ? TYR A 42 . ? 1_555 ? 21 AC2 14 ASN A 43 ? ASN A 43 . ? 1_555 ? 22 AC2 14 ASN A 44 ? ASN A 44 . ? 1_555 ? 23 AC2 14 TYR A 45 ? TYR A 45 . ? 1_555 ? 24 AC2 14 GLU A 46 ? GLU A 46 . ? 1_555 ? 25 AC2 14 ASP A 49 ? ASP A 49 . ? 4_566 ? 26 AC2 14 GLU A 58 ? GLU A 58 . ? 1_555 ? 27 AC2 14 ARG A 77 ? ARG A 77 . ? 1_555 ? 28 AC2 14 HIS A 92 ? HIS A 92 . ? 1_555 ? 29 AC2 14 ASN A 98 ? ASN A 98 . ? 1_555 ? 30 AC2 14 PHE A 100 ? PHE A 100 . ? 1_555 ? 31 AC2 14 3GP D . ? 3GP A 106 . ? 1_555 ? 32 AC3 14 ASN A 36 ? ASN A 36 . ? 1_555 ? 33 AC3 14 TYR A 38 ? TYR A 38 . ? 1_555 ? 34 AC3 14 HIS A 40 ? HIS A 40 . ? 1_555 ? 35 AC3 14 LYS A 41 ? LYS A 41 . ? 1_555 ? 36 AC3 14 TYR A 42 ? TYR A 42 . ? 1_555 ? 37 AC3 14 ASN A 43 ? ASN A 43 . ? 1_555 ? 38 AC3 14 ASN A 44 ? ASN A 44 . ? 1_555 ? 39 AC3 14 TYR A 45 ? TYR A 45 . ? 1_555 ? 40 AC3 14 GLU A 46 ? GLU A 46 . ? 1_555 ? 41 AC3 14 GLU A 58 ? GLU A 58 . ? 1_555 ? 42 AC3 14 HIS A 92 ? HIS A 92 . ? 1_555 ? 43 AC3 14 ASN A 98 ? ASN A 98 . ? 1_555 ? 44 AC3 14 PHE A 100 ? PHE A 100 . ? 1_555 ? 45 AC3 14 SGP C . ? SGP A 105 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GSP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GSP _atom_sites.fract_transf_matrix[1][1] 0.020713 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024661 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 THR 104 104 104 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 107 107 CA CA A . C 3 SGP 1 105 105 SGP SGP A . D 4 3GP 1 106 106 3GP 3GP A . E 5 HOH 1 108 108 HOH HOH A . E 5 HOH 2 109 109 HOH HOH A . E 5 HOH 3 110 110 HOH HOH A . E 5 HOH 4 111 111 HOH HOH A . E 5 HOH 5 112 112 HOH HOH A . E 5 HOH 6 113 113 HOH HOH A . E 5 HOH 7 114 114 HOH HOH A . E 5 HOH 8 115 115 HOH HOH A . E 5 HOH 9 116 116 HOH HOH A . E 5 HOH 10 117 117 HOH HOH A . E 5 HOH 11 118 118 HOH HOH A . E 5 HOH 12 119 119 HOH HOH A . E 5 HOH 13 120 120 HOH HOH A . E 5 HOH 14 121 121 HOH HOH A . E 5 HOH 15 122 122 HOH HOH A . E 5 HOH 16 123 123 HOH HOH A . E 5 HOH 17 124 124 HOH HOH A . E 5 HOH 18 125 125 HOH HOH A . E 5 HOH 19 126 126 HOH HOH A . E 5 HOH 20 127 127 HOH HOH A . E 5 HOH 21 128 128 HOH HOH A . E 5 HOH 22 129 129 HOH HOH A . E 5 HOH 23 130 130 HOH HOH A . E 5 HOH 24 131 131 HOH HOH A . E 5 HOH 25 132 132 HOH HOH A . E 5 HOH 26 133 133 HOH HOH A . E 5 HOH 27 134 134 HOH HOH A . E 5 HOH 28 135 135 HOH HOH A . E 5 HOH 29 136 136 HOH HOH A . E 5 HOH 30 137 137 HOH HOH A . E 5 HOH 31 138 138 HOH HOH A . E 5 HOH 32 139 139 HOH HOH A . E 5 HOH 33 140 140 HOH HOH A . E 5 HOH 34 141 141 HOH HOH A . E 5 HOH 35 142 142 HOH HOH A . E 5 HOH 36 143 143 HOH HOH A . E 5 HOH 37 144 144 HOH HOH A . E 5 HOH 38 145 145 HOH HOH A . E 5 HOH 39 146 146 HOH HOH A . E 5 HOH 40 147 147 HOH HOH A . E 5 HOH 41 148 148 HOH HOH A . E 5 HOH 42 149 149 HOH HOH A . E 5 HOH 43 150 150 HOH HOH A . E 5 HOH 44 151 151 HOH HOH A . E 5 HOH 45 152 152 HOH HOH A . E 5 HOH 46 153 153 HOH HOH A . E 5 HOH 47 154 154 HOH HOH A . E 5 HOH 48 155 155 HOH HOH A . E 5 HOH 49 156 156 HOH HOH A . E 5 HOH 50 157 157 HOH HOH A . E 5 HOH 51 158 158 HOH HOH A . E 5 HOH 52 159 159 HOH HOH A . E 5 HOH 53 160 160 HOH HOH A . E 5 HOH 54 161 161 HOH HOH A . E 5 HOH 55 162 162 HOH HOH A . E 5 HOH 56 163 163 HOH HOH A . E 5 HOH 57 164 164 HOH HOH A . E 5 HOH 58 165 165 HOH HOH A . E 5 HOH 59 166 166 HOH HOH A . E 5 HOH 60 167 167 HOH HOH A . E 5 HOH 61 168 168 HOH HOH A . E 5 HOH 62 169 169 HOH HOH A . E 5 HOH 63 170 170 HOH HOH A . E 5 HOH 64 171 171 HOH HOH A . E 5 HOH 65 172 172 HOH HOH A . E 5 HOH 66 173 173 HOH HOH A . E 5 HOH 67 174 174 HOH HOH A . E 5 HOH 68 175 175 HOH HOH A . E 5 HOH 69 176 176 HOH HOH A . E 5 HOH 70 177 177 HOH HOH A . E 5 HOH 71 178 178 HOH HOH A . E 5 HOH 72 179 179 HOH HOH A . E 5 HOH 73 180 180 HOH HOH A . E 5 HOH 74 181 181 HOH HOH A . E 5 HOH 75 182 182 HOH HOH A . E 5 HOH 76 183 183 HOH HOH A . E 5 HOH 77 184 184 HOH HOH A . E 5 HOH 78 185 185 HOH HOH A . E 5 HOH 79 186 186 HOH HOH A . E 5 HOH 80 187 187 HOH HOH A . E 5 HOH 81 188 188 HOH HOH A . E 5 HOH 82 189 189 HOH HOH A . E 5 HOH 83 190 190 HOH HOH A . E 5 HOH 84 191 191 HOH HOH A . E 5 HOH 85 192 192 HOH HOH A . E 5 HOH 86 193 193 HOH HOH A . E 5 HOH 87 194 194 HOH HOH A . E 5 HOH 88 195 195 HOH HOH A . E 5 HOH 89 196 196 HOH HOH A . E 5 HOH 90 197 197 HOH HOH A . E 5 HOH 91 198 198 HOH HOH A . E 5 HOH 92 199 199 HOH HOH A . E 5 HOH 93 200 200 HOH HOH A . E 5 HOH 94 201 201 HOH HOH A . E 5 HOH 95 202 202 HOH HOH A . E 5 HOH 96 203 203 HOH HOH A . E 5 HOH 97 204 204 HOH HOH A . E 5 HOH 98 205 205 HOH HOH A . E 5 HOH 99 206 206 HOH HOH A . E 5 HOH 100 207 207 HOH HOH A . E 5 HOH 101 208 208 HOH HOH A . E 5 HOH 102 209 209 HOH HOH A . E 5 HOH 103 210 210 HOH HOH A . E 5 HOH 104 211 211 HOH HOH A . E 5 HOH 105 212 212 HOH HOH A . E 5 HOH 106 213 213 HOH HOH A . E 5 HOH 107 214 214 HOH HOH A . E 5 HOH 108 215 215 HOH HOH A . E 5 HOH 109 216 216 HOH HOH A . E 5 HOH 110 217 217 HOH HOH A . E 5 HOH 111 218 218 HOH HOH A . E 5 HOH 112 219 219 HOH HOH A . E 5 HOH 113 220 220 HOH HOH A . E 5 HOH 114 221 221 HOH HOH A . E 5 HOH 115 222 222 HOH HOH A . E 5 HOH 116 223 223 HOH HOH A . E 5 HOH 117 224 224 HOH HOH A . E 5 HOH 118 225 225 HOH HOH A . E 5 HOH 119 226 226 HOH HOH A . E 5 HOH 120 227 227 HOH HOH A . E 5 HOH 121 228 228 HOH HOH A . E 5 HOH 122 229 229 HOH HOH A . E 5 HOH 123 230 230 HOH HOH A . E 5 HOH 124 231 231 HOH HOH A . E 5 HOH 125 232 232 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 50.7 ? 2 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 126 ? 1_555 86.5 ? 3 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 126 ? 1_555 137.1 ? 4 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 149 ? 1_555 79.9 ? 5 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 149 ? 1_555 82.9 ? 6 O ? E HOH . ? A HOH 126 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 149 ? 1_555 90.7 ? 7 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 157 ? 1_555 118.5 ? 8 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 157 ? 1_555 67.9 ? 9 O ? E HOH . ? A HOH 126 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 157 ? 1_555 154.8 ? 10 O ? E HOH . ? A HOH 149 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 157 ? 1_555 90.8 ? 11 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 162 ? 1_555 148.2 ? 12 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 162 ? 1_555 142.3 ? 13 O ? E HOH . ? A HOH 126 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 162 ? 1_555 73.9 ? 14 O ? E HOH . ? A HOH 149 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 162 ? 1_555 124.1 ? 15 O ? E HOH . ? A HOH 157 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 162 ? 1_555 84.5 ? 16 OD2 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 78.5 ? 17 OD1 ? A ASP 15 ? A ASP 15 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 78.1 ? 18 O ? E HOH . ? A HOH 126 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 94.7 ? 19 O ? E HOH . ? A HOH 149 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 157.3 ? 20 O ? E HOH . ? A HOH 157 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 93.5 ? 21 O ? E HOH . ? A HOH 162 ? 1_555 CA ? B CA . ? A CA 107 ? 1_555 O ? E HOH . ? A HOH 181 ? 1_555 78.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-12 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' 3.851 ? 3 X-PLOR refinement 3.851 ? 4 X-PLOR phasing 3.851 ? 5 # _pdbx_entry_details.entry_id 3GSP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;SGP IS THE SUBSTRATE AND 3GP THE PRODUCT OF A HYDROLYSIS REACTION TAKING PLACE IN THE CRYSTALS. THEIR OCCUPANCIES WERE RESCALED TO GIVE A SUM OF 1.0 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 37 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 50.43 _pdbx_validate_torsion.psi 77.77 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" SGP 4 "GUANOSINE-3'-MONOPHOSPHATE" 3GP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RGA _pdbx_initial_refinement_model.details 'PDB ENTRY 1RGA' #