HEADER OXIDOREDUCTASE 27-MAR-09 3GSY TITLE STRUCTURE OF BERBERINE BRIDGE ENZYME IN COMPLEX WITH DEHYDROSCOULERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULINE OXIDASE; BERBERINE BRIDGE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BBE, TETRAHYDROPROTOBERBERINE SYNTHASE; COMPND 5 EC: 1.21.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHSCHOLZIA CALIFORNICA; SOURCE 3 ORGANISM_COMMON: CALIFORNIA POPPY; SOURCE 4 ORGANISM_TAXID: 3467; SOURCE 5 GENE: BBE1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS COMPLEX WITH DEHYDROSCOULERINE, BICOVALENT FLAVINYLATION, N- KEYWDS 2 GLYCOSYLATION, P-CRESOL METHYL HYDROXYLASE SUPERFAMILY, ALKALOID KEYWDS 3 METABOLISM, CYTOPLASMIC VESICLE, FAD, FLAVOPROTEIN, GLYCOPROTEIN, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,P.MACHEROUX,K.GRUBER REVDAT 5 06-SEP-23 3GSY 1 HETSYN REVDAT 4 29-JUL-20 3GSY 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3GSY 1 VERSN REVDAT 2 06-OCT-09 3GSY 1 JRNL REVDAT 1 30-JUN-09 3GSY 0 JRNL AUTH A.WINKLER,M.PUHL,H.WEBER,T.M.KUTCHAN,K.GRUBER,P.MACHEROUX JRNL TITL BERBERINE BRIDGE ENZYME CATALYZES THE SIX ELECTRON OXIDATION JRNL TITL 2 OF (S)-RETICULINE TO DEHYDROSCOULERINE. JRNL REF PHYTOCHEMISTRY V. 70 1092 2009 JRNL REFN ISSN 0031-9422 JRNL PMID 19570558 JRNL DOI 10.1016/J.PHYTOCHEM.2009.06.005 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 76019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3680 - 4.8750 0.99 2982 133 0.1690 0.1830 REMARK 3 2 4.8750 - 3.8700 1.00 2802 160 0.1310 0.1360 REMARK 3 3 3.8700 - 3.3810 1.00 2766 148 0.1430 0.1710 REMARK 3 4 3.3810 - 3.0720 1.00 2729 141 0.1530 0.1840 REMARK 3 5 3.0720 - 2.8520 1.00 2684 164 0.1620 0.1890 REMARK 3 6 2.8520 - 2.6840 1.00 2716 149 0.1650 0.2010 REMARK 3 7 2.6840 - 2.5490 1.00 2670 149 0.1680 0.1820 REMARK 3 8 2.5490 - 2.4380 1.00 2683 142 0.1630 0.2020 REMARK 3 9 2.4380 - 2.3450 1.00 2699 135 0.1570 0.1800 REMARK 3 10 2.3450 - 2.2640 1.00 2674 145 0.1510 0.1820 REMARK 3 11 2.2640 - 2.1930 1.00 2669 137 0.1540 0.1960 REMARK 3 12 2.1930 - 2.1300 1.00 2675 135 0.1570 0.1770 REMARK 3 13 2.1300 - 2.0740 1.00 2621 154 0.1580 0.1800 REMARK 3 14 2.0740 - 2.0240 1.00 2653 136 0.1570 0.1840 REMARK 3 15 2.0240 - 1.9780 1.00 2678 137 0.1560 0.2190 REMARK 3 16 1.9780 - 1.9360 1.00 2644 153 0.1570 0.1750 REMARK 3 17 1.9360 - 1.8970 1.00 2653 123 0.1620 0.1750 REMARK 3 18 1.8970 - 1.8610 1.00 2618 150 0.1570 0.1780 REMARK 3 19 1.8610 - 1.8280 1.00 2672 139 0.1540 0.1620 REMARK 3 20 1.8280 - 1.7970 1.00 2642 136 0.1590 0.1900 REMARK 3 21 1.7970 - 1.7680 1.00 2613 132 0.1650 0.1870 REMARK 3 22 1.7680 - 1.7410 1.00 2646 138 0.1690 0.2070 REMARK 3 23 1.7410 - 1.7150 1.00 2643 139 0.1690 0.2250 REMARK 3 24 1.7150 - 1.6910 1.00 2618 145 0.1760 0.2270 REMARK 3 25 1.6910 - 1.6680 1.00 2653 143 0.1860 0.2310 REMARK 3 26 1.6680 - 1.6460 1.00 2606 125 0.1970 0.2570 REMARK 3 27 1.6460 - 1.6260 0.94 2489 133 0.2130 0.2220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 50.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.80100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4275 REMARK 3 ANGLE : 1.095 5832 REMARK 3 CHIRALITY : 0.070 637 REMARK 3 PLANARITY : 0.005 729 REMARK 3 DIHEDRAL : 18.092 1553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 26:114) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5679 -2.4512 -33.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.3082 REMARK 3 T33: 0.1425 T12: 0.0474 REMARK 3 T13: -0.0045 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.0337 L22: 0.9624 REMARK 3 L33: 0.8172 L12: -0.0574 REMARK 3 L13: -0.0588 L23: 0.3915 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: 0.3713 S13: -0.1396 REMARK 3 S21: -0.2669 S22: -0.0356 S23: -0.0972 REMARK 3 S31: 0.1170 S32: 0.2087 S33: -0.0497 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 115:244) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0247 7.8603 -14.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1083 REMARK 3 T33: 0.1085 T12: -0.0073 REMARK 3 T13: 0.0060 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.8482 L22: 0.6409 REMARK 3 L33: 0.9842 L12: 0.0471 REMARK 3 L13: 0.2536 L23: 0.1551 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: 0.0742 S13: 0.0277 REMARK 3 S21: 0.0264 S22: 0.0235 S23: -0.0413 REMARK 3 S31: -0.0559 S32: 0.1251 S33: -0.0925 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 245:349) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6721 -7.1313 4.5006 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.1216 REMARK 3 T33: 0.1477 T12: -0.0162 REMARK 3 T13: -0.0258 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.0838 L22: 0.4195 REMARK 3 L33: 0.7350 L12: 0.6159 REMARK 3 L13: 0.0092 L23: -0.3186 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: -0.2512 S13: -0.1240 REMARK 3 S21: 0.0346 S22: -0.0570 S23: 0.0341 REMARK 3 S31: 0.1482 S32: 0.0173 S33: -0.0445 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 350:374) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9664 -5.7331 -8.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1924 REMARK 3 T33: 0.1722 T12: -0.0080 REMARK 3 T13: -0.0154 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.2898 L22: 0.5994 REMARK 3 L33: 0.9336 L12: 0.5337 REMARK 3 L13: 0.3758 L23: 0.3616 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: 0.0097 S13: -0.1348 REMARK 3 S21: 0.0061 S22: 0.0721 S23: -0.0295 REMARK 3 S31: 0.0718 S32: 0.1664 S33: -0.1644 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 375:460) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9225 -3.3862 -10.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1233 REMARK 3 T33: 0.1242 T12: 0.0009 REMARK 3 T13: -0.0155 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1219 L22: 0.6265 REMARK 3 L33: 0.7714 L12: 0.3759 REMARK 3 L13: -0.2474 L23: -0.1825 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: 0.1377 S13: -0.0422 REMARK 3 S21: 0.0527 S22: 0.0546 S23: 0.0508 REMARK 3 S31: 0.1108 S32: -0.0730 S33: -0.0875 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 461:520) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6267 12.2284 -27.3067 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1803 REMARK 3 T33: 0.1569 T12: 0.0685 REMARK 3 T13: 0.0154 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 0.7014 L22: 0.1233 REMARK 3 L33: 1.1629 L12: -0.1316 REMARK 3 L13: 0.1320 L23: -0.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: 0.2292 S13: 0.1743 REMARK 3 S21: -0.0956 S22: 0.0082 S23: 0.1367 REMARK 3 S31: -0.2189 S32: -0.3023 S33: -0.1323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48100 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3D2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 30% PEG-4000, 0.1 M REMARK 280 TRIS/HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.63000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.47000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.81500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.47000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.44500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.47000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.81500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 185.44500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 ASN A 25 REMARK 465 ASN A 521 REMARK 465 PHE A 522 REMARK 465 ASP A 523 REMARK 465 TYR A 524 REMARK 465 LEU A 525 REMARK 465 GLU A 526 REMARK 465 LYS A 527 REMARK 465 THR A 528 REMARK 465 LEU A 529 REMARK 465 GLY A 530 REMARK 465 SER A 531 REMARK 465 ASP A 532 REMARK 465 GLY A 533 REMARK 465 GLY A 534 REMARK 465 GLU A 535 REMARK 465 VAL A 536 REMARK 465 VAL A 537 REMARK 465 ILE A 538 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 979 O HOH A 979 7555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -81.04 -105.55 REMARK 500 TYR A 111 18.41 -148.44 REMARK 500 GLU A 287 -117.30 49.45 REMARK 500 PHE A 313 56.34 -147.51 REMARK 500 PHE A 392 -135.09 -96.36 REMARK 500 ARG A 409 -120.94 -118.40 REMARK 500 HIS A 459 49.57 -106.21 REMARK 500 HIS A 459 47.38 -104.77 REMARK 500 LEU A 491 -126.74 42.15 REMARK 500 ASP A 505 58.31 -143.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 542 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 HOH A 5 O 86.2 REMARK 620 3 ASP A 45 OD1 95.1 98.4 REMARK 620 4 ASP A 47 OD1 101.2 172.3 83.2 REMARK 620 5 HOH A 543 O 170.6 90.1 94.0 82.2 REMARK 620 6 HOH A 574 O 80.3 93.4 167.0 85.8 91.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D2D RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME IN COMPLEX WITH (S)-RETICULINE REMARK 900 RELATED ID: 3D2H RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME, MONOCLINIC CRYSTAL FORM REMARK 900 RELATED ID: 3D2J RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME FROM ESCHSCHOLZIA CALIFORNICA, REMARK 900 TETRAGONAL CRYSTAL FORM REMARK 900 RELATED ID: 3FW9 RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME IN COMPLEX WITH (S)-SCOULERINE REMARK 900 RELATED ID: 3FW7 RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME, H104A VARIANT REMARK 900 RELATED ID: 3FW8 RELATED DB: PDB REMARK 900 STRUCTURE OF BERBERINE BRIDGE ENZYME, C166A VARIANT DBREF 3GSY A 24 538 UNP P30986 RETO_ESCCA 21 535 SEQADV 3GSY GLU A 20 UNP P30986 EXPRESSION TAG SEQADV 3GSY ALA A 21 UNP P30986 EXPRESSION TAG SEQADV 3GSY GLU A 22 UNP P30986 EXPRESSION TAG SEQADV 3GSY ALA A 23 UNP P30986 EXPRESSION TAG SEQRES 1 A 519 GLU ALA GLU ALA GLY ASN ASP LEU LEU SER CYS LEU THR SEQRES 2 A 519 PHE ASN GLY VAL ARG ASN HIS THR VAL PHE SER ALA ASP SEQRES 3 A 519 SER ASP SER ASP PHE ASN ARG PHE LEU HIS LEU SER ILE SEQRES 4 A 519 GLN ASN PRO LEU PHE GLN ASN SER LEU ILE SER LYS PRO SEQRES 5 A 519 SER ALA ILE ILE LEU PRO GLY SER LYS GLU GLU LEU SER SEQRES 6 A 519 ASN THR ILE ARG CYS ILE ARG LYS GLY SER TRP THR ILE SEQRES 7 A 519 ARG LEU ARG SER GLY GLY HIS SER TYR GLU GLY LEU SER SEQRES 8 A 519 TYR THR SER ASP THR PRO PHE ILE LEU ILE ASP LEU MET SEQRES 9 A 519 ASN LEU ASN ARG VAL SER ILE ASP LEU GLU SER GLU THR SEQRES 10 A 519 ALA TRP VAL GLU SER GLY SER THR LEU GLY GLU LEU TYR SEQRES 11 A 519 TYR ALA ILE THR GLU SER SER SER LYS LEU GLY PHE THR SEQRES 12 A 519 ALA GLY TRP CYS PRO THR VAL GLY THR GLY GLY HIS ILE SEQRES 13 A 519 SER GLY GLY GLY PHE GLY MET MET SER ARG LYS TYR GLY SEQRES 14 A 519 LEU ALA ALA ASP ASN VAL VAL ASP ALA ILE LEU ILE ASP SEQRES 15 A 519 ALA ASN GLY ALA ILE LEU ASP ARG GLN ALA MET GLY GLU SEQRES 16 A 519 ASP VAL PHE TRP ALA ILE ARG GLY GLY GLY GLY GLY VAL SEQRES 17 A 519 TRP GLY ALA ILE TYR ALA TRP LYS ILE LYS LEU LEU PRO SEQRES 18 A 519 VAL PRO GLU LYS VAL THR VAL PHE ARG VAL THR LYS ASN SEQRES 19 A 519 VAL ALA ILE ASP GLU ALA THR SER LEU LEU HIS LYS TRP SEQRES 20 A 519 GLN PHE VAL ALA GLU GLU LEU GLU GLU ASP PHE THR LEU SEQRES 21 A 519 SER VAL LEU GLY GLY ALA ASP GLU LYS GLN VAL TRP LEU SEQRES 22 A 519 THR MET LEU GLY PHE HIS PHE GLY LEU LYS THR VAL ALA SEQRES 23 A 519 LYS SER THR PHE ASP LEU LEU PHE PRO GLU LEU GLY LEU SEQRES 24 A 519 VAL GLU GLU ASP TYR LEU GLU MET SER TRP GLY GLU SER SEQRES 25 A 519 PHE ALA TYR LEU ALA GLY LEU GLU THR VAL SER GLN LEU SEQRES 26 A 519 ASN ASN ARG PHE LEU LYS PHE ASP GLU ARG ALA PHE LYS SEQRES 27 A 519 THR LYS VAL ASP LEU THR LYS GLU PRO LEU PRO SER LYS SEQRES 28 A 519 ALA PHE TYR GLY LEU LEU GLU ARG LEU SER LYS GLU PRO SEQRES 29 A 519 ASN GLY PHE ILE ALA LEU ASN GLY PHE GLY GLY GLN MET SEQRES 30 A 519 SER LYS ILE SER SER ASP PHE THR PRO PHE PRO HIS ARG SEQRES 31 A 519 SER GLY THR ARG LEU MET VAL GLU TYR ILE VAL ALA TRP SEQRES 32 A 519 ASN GLN SER GLU GLN LYS LYS LYS THR GLU PHE LEU ASP SEQRES 33 A 519 TRP LEU GLU LYS VAL TYR GLU PHE MET LYS PRO PHE VAL SEQRES 34 A 519 SER LYS ASN PRO ARG LEU GLY TYR VAL ASN HIS ILE ASP SEQRES 35 A 519 LEU ASP LEU GLY GLY ILE ASP TRP GLY ASN LYS THR VAL SEQRES 36 A 519 VAL ASN ASN ALA ILE GLU ILE SER ARG SER TRP GLY GLU SEQRES 37 A 519 SER TYR PHE LEU SER ASN TYR GLU ARG LEU ILE ARG ALA SEQRES 38 A 519 LYS THR LEU ILE ASP PRO ASN ASN VAL PHE ASN HIS PRO SEQRES 39 A 519 GLN SER ILE PRO PRO MET ALA ASN PHE ASP TYR LEU GLU SEQRES 40 A 519 LYS THR LEU GLY SER ASP GLY GLY GLU VAL VAL ILE MODRES 3GSY ASN A 471 ASN GLYCOSYLATION SITE MODRES 3GSY ASN A 38 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FAD A 1 53 HET DEH A 2 24 HET NAG A 541 14 HET MG A 542 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM DEH 2,9-DIHYDROXY-3,10-DIMETHOXY-5,6-DIHYDROISOQUINO[3,2- HETNAM 2 DEH A]ISOQUINOLINIUM HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 DEH C19 H18 N O4 1+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *680(H2 O) HELIX 1 1 ASP A 26 ASN A 34 1 9 HELIX 2 2 SER A 48 SER A 57 1 10 HELIX 3 3 ASN A 60 GLN A 64 5 5 HELIX 4 4 SER A 79 GLY A 93 1 15 HELIX 5 5 THR A 144 SER A 156 1 13 HELIX 6 6 GLY A 170 GLY A 177 1 8 HELIX 7 7 MET A 183 GLY A 188 1 6 HELIX 8 8 LEU A 189 ASP A 192 5 4 HELIX 9 9 ASP A 208 GLY A 213 1 6 HELIX 10 10 GLY A 213 ARG A 221 1 9 HELIX 11 11 ALA A 255 LEU A 273 1 19 HELIX 12 12 LEU A 301 PHE A 313 1 13 HELIX 13 13 PRO A 314 GLY A 317 5 4 HELIX 14 14 VAL A 319 TYR A 323 5 5 HELIX 15 15 SER A 327 ALA A 336 1 10 HELIX 16 16 THR A 340 ASN A 346 5 7 HELIX 17 17 PRO A 368 GLU A 382 1 15 HELIX 18 18 GLY A 393 LYS A 398 5 6 HELIX 19 19 ASN A 423 LYS A 428 5 6 HELIX 20 20 LYS A 429 LYS A 445 1 17 HELIX 21 21 PRO A 446 VAL A 448 5 3 HELIX 22 22 TYR A 456 ILE A 460 5 5 HELIX 23 23 ASP A 461 GLY A 465 5 5 HELIX 24 24 ASN A 471 ASN A 477 1 7 HELIX 25 25 ASN A 477 LEU A 491 1 15 HELIX 26 26 ASN A 493 ASP A 505 1 13 SHEET 1 A 4 HIS A 39 VAL A 41 0 SHEET 2 A 4 ALA A 73 ILE A 75 -1 O ILE A 74 N THR A 40 SHEET 3 A 4 PHE A 117 ASP A 121 1 O LEU A 119 N ILE A 75 SHEET 4 A 4 THR A 96 ARG A 100 1 N ARG A 98 O ILE A 120 SHEET 1 B 5 VAL A 128 ASP A 131 0 SHEET 2 B 5 THR A 136 GLU A 140 -1 O THR A 136 N ASP A 131 SHEET 3 B 5 ALA A 230 LYS A 237 -1 O TRP A 234 N VAL A 139 SHEET 4 B 5 VAL A 194 ILE A 200 -1 N ILE A 198 O TYR A 232 SHEET 5 B 5 ILE A 206 LEU A 207 -1 O LEU A 207 N LEU A 199 SHEET 1 C 2 LEU A 159 GLY A 160 0 SHEET 2 C 2 LEU A 239 PRO A 240 -1 O LEU A 239 N GLY A 160 SHEET 1 D 7 LEU A 324 MET A 326 0 SHEET 2 D 7 VAL A 245 VAL A 254 -1 N VAL A 245 O MET A 326 SHEET 3 D 7 GLN A 289 HIS A 298 -1 O MET A 294 N VAL A 250 SHEET 4 D 7 PHE A 277 ASP A 286 -1 N LEU A 282 O THR A 293 SHEET 5 D 7 GLY A 385 GLY A 391 -1 O LEU A 389 N VAL A 281 SHEET 6 D 7 LEU A 414 TRP A 422 -1 O ILE A 419 N PHE A 386 SHEET 7 D 7 ALA A 355 LEU A 362 -1 N LYS A 359 O TYR A 418 SSBOND 1 CYS A 30 CYS A 89 1555 1555 2.04 LINK C8M FAD A 1 ND1 HIS A 104 1555 1555 1.57 LINK C6 FAD A 1 SG CYS A 166 1555 1555 1.78 LINK ND2 ASN A 38 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 471 C1 NAG A 541 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O HOH A 4 MG MG A 542 1555 1555 2.49 LINK O HOH A 5 MG MG A 542 1555 1555 2.14 LINK OD1 ASP A 45 MG MG A 542 1555 1555 2.43 LINK OD1 ASP A 47 MG MG A 542 1555 1555 2.09 LINK MG MG A 542 O HOH A 543 1555 1555 2.10 LINK MG MG A 542 O HOH A 574 1555 1555 2.07 CISPEP 1 ASN A 451 PRO A 452 0 1.96 CRYST1 68.940 68.940 247.260 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004044 0.00000