HEADER HYDROLASE 27-MAR-09 3GTN TITLE CRYSTAL STRUCTURE OF XYNC FROM BACILLUS SUBTILIS 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCURONOXYLANASE XYNC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUCURONOXYLAN XYLANOHYDROLASE, ENDOXYLANASE XYNC; COMPND 5 EC: 3.2.1.136; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: SUBTILIS 168; SOURCE 5 GENE: BSU18150, XYNC, YNFF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS XYLANASE, GLYCOSYL HYDROLASE FAMILY 5, GH5, GH 5, XYNC, BACILLUS KEYWDS 2 SUBTILIS, GLUCURONOXYLAN, GLYCOSYL HYDROLASE, CARBOHYDRATE KEYWDS 3 METABOLISM, GLYCOSIDASE, HYDROLASE, POLYSACCHARIDE DEGRADATION, KEYWDS 4 SECRETED, XYLAN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR F.J.ST JOHN,J.C.HURLBERT,E.POZHARSKI REVDAT 5 21-FEB-24 3GTN 1 SEQADV REVDAT 4 01-NOV-17 3GTN 1 REMARK REVDAT 3 09-JUN-10 3GTN 1 JRNL REVDAT 2 05-MAY-09 3GTN 1 JRNL REVDAT 1 28-APR-09 3GTN 0 JRNL AUTH F.J.ST JOHN,D.K.GODWIN,J.F.PRESTON,E.POZHARSKI,J.C.HURLBERT JRNL TITL CRYSTALLIZATION AND CRYSTALLOGRAPHIC ANALYSIS OF BACILLUS JRNL TITL 2 SUBTILIS XYLANASE C. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 499 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19407387 JRNL DOI 10.1107/S1744309109013098 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 24990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6487 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8835 ; 1.656 ; 1.902 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 787 ; 7.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 339 ;39.343 ;24.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 997 ;20.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;24.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 921 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5130 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3929 ; 0.529 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6336 ; 0.988 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2558 ; 1.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2499 ; 2.331 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 85 1 REMARK 3 1 B 3 B 85 1 REMARK 3 2 A 86 A 105 3 REMARK 3 2 B 86 B 105 3 REMARK 3 3 A 106 A 390 1 REMARK 3 3 B 106 B 390 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3015 ; 0.080 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 75 ; 0.060 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 3015 ; 0.140 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 75 ; 0.170 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3GTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.23700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM TARTRATE DIBASIC REMARK 280 DIHYDRATE, 20% PEG 3350, PH 7.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.05400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 393 N HIS B 395 2.04 REMARK 500 O ASP B 189 N GLN B 191 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 37 OG SER B 209 2546 1.98 REMARK 500 OE2 GLU A 37 OG SER A 209 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 211 CZ PHE A 211 CE2 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 -9.60 -58.12 REMARK 500 LYS A 13 -128.72 -107.55 REMARK 500 ALA A 70 -70.61 -61.66 REMARK 500 LYS A 71 -61.41 -17.32 REMARK 500 SER A 89 -35.19 -27.76 REMARK 500 ASN A 98 82.81 21.50 REMARK 500 TYR A 143 52.03 -155.64 REMARK 500 HIS A 145 -45.05 -27.86 REMARK 500 TRP A 147 -126.25 -141.98 REMARK 500 ALA A 163 -36.50 -33.65 REMARK 500 ILE A 166 108.90 -23.13 REMARK 500 GLN A 177 20.19 -144.39 REMARK 500 PRO A 190 -16.24 -49.17 REMARK 500 TYR A 204 96.79 -65.20 REMARK 500 TYR A 213 82.31 -154.86 REMARK 500 GLU A 229 122.34 -172.92 REMARK 500 TRP A 268 -152.72 -61.56 REMARK 500 TYR A 269 131.49 -38.51 REMARK 500 ARG A 272 138.29 176.11 REMARK 500 SER A 273 -18.15 -49.58 REMARK 500 ASN A 323 47.37 37.31 REMARK 500 SER A 357 -161.33 -125.55 REMARK 500 SER A 371 -75.83 -74.64 REMARK 500 HIS A 394 -2.59 -168.33 REMARK 500 HIS A 395 33.46 -76.45 REMARK 500 HIS A 396 7.32 52.62 REMARK 500 LYS B 13 -133.23 -104.51 REMARK 500 SER B 89 -34.86 -31.31 REMARK 500 ASN B 98 80.15 21.64 REMARK 500 TYR B 143 42.43 -151.12 REMARK 500 TRP B 147 -128.15 -139.74 REMARK 500 ALA B 163 -37.13 -34.22 REMARK 500 ILE B 166 109.56 -17.89 REMARK 500 GLN B 177 16.53 -145.05 REMARK 500 SER B 183 -12.17 -143.07 REMARK 500 PRO B 190 -5.16 -51.20 REMARK 500 TYR B 204 93.64 -57.49 REMARK 500 TYR B 213 76.88 -158.11 REMARK 500 GLU B 229 124.55 -177.15 REMARK 500 THR B 237 132.99 -39.60 REMARK 500 TRP B 268 -156.67 -60.70 REMARK 500 TYR B 269 135.21 -28.12 REMARK 500 ARG B 272 138.55 175.91 REMARK 500 ASN B 313 4.88 56.63 REMARK 500 ASN B 323 50.71 34.83 REMARK 500 SER B 357 -165.17 -120.94 REMARK 500 SER B 371 -78.81 -66.91 REMARK 500 ASN B 373 38.95 -97.48 REMARK 500 ALA B 377 145.17 -171.71 REMARK 500 GLN B 382 80.10 46.05 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3GTN A 2 391 UNP Q45070 XYNC1_BACSU 33 422 DBREF 3GTN B 2 391 UNP Q45070 XYNC1_BACSU 33 422 SEQADV 3GTN MET A 1 UNP Q45070 INITIATING METHIONINE SEQADV 3GTN LEU A 392 UNP Q45070 EXPRESSION TAG SEQADV 3GTN GLU A 393 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 394 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 395 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 396 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 397 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 398 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 399 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 400 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS A 401 UNP Q45070 EXPRESSION TAG SEQADV 3GTN MET B 1 UNP Q45070 INITIATING METHIONINE SEQADV 3GTN LEU B 392 UNP Q45070 EXPRESSION TAG SEQADV 3GTN GLU B 393 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 394 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 395 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 396 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 397 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 398 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 399 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 400 UNP Q45070 EXPRESSION TAG SEQADV 3GTN HIS B 401 UNP Q45070 EXPRESSION TAG SEQRES 1 A 401 MET ALA SER ASP VAL THR VAL ASN VAL SER ALA GLU LYS SEQRES 2 A 401 GLN VAL ILE ARG GLY PHE GLY GLY MET ASN HIS PRO ALA SEQRES 3 A 401 TRP ALA GLY ASP LEU THR ALA ALA GLN ARG GLU THR ALA SEQRES 4 A 401 PHE GLY ASN GLY GLN ASN GLN LEU GLY PHE SER ILE LEU SEQRES 5 A 401 ARG ILE HIS VAL ASP GLU ASN ARG ASN ASN TRP TYR LYS SEQRES 6 A 401 GLU VAL GLU THR ALA LYS SER ALA VAL LYS HIS GLY ALA SEQRES 7 A 401 ILE VAL PHE ALA SER PRO TRP ASN PRO PRO SER ASP MET SEQRES 8 A 401 VAL GLU THR PHE ASN ARG ASN GLY ASP THR SER ALA LYS SEQRES 9 A 401 ARG LEU LYS TYR ASN LYS TYR ALA ALA TYR ALA GLN HIS SEQRES 10 A 401 LEU ASN ASP PHE VAL THR PHE MET LYS ASN ASN GLY VAL SEQRES 11 A 401 ASN LEU TYR ALA ILE SER VAL GLN ASN GLU PRO ASP TYR SEQRES 12 A 401 ALA HIS GLU TRP THR TRP TRP THR PRO GLN GLU ILE LEU SEQRES 13 A 401 ARG PHE MET ARG GLU ASN ALA GLY SER ILE ASN ALA ARG SEQRES 14 A 401 VAL ILE ALA PRO GLU SER PHE GLN TYR LEU LYS ASN LEU SEQRES 15 A 401 SER ASP PRO ILE LEU ASN ASP PRO GLN ALA LEU ALA ASN SEQRES 16 A 401 MET ASP ILE LEU GLY THR HIS LEU TYR GLY THR GLN VAL SEQRES 17 A 401 SER GLN PHE PRO TYR PRO LEU PHE LYS GLN LYS GLY ALA SEQRES 18 A 401 GLY LYS ASP LEU TRP MET THR GLU VAL TYR TYR PRO ASN SEQRES 19 A 401 SER ASP THR ASN SER ALA ASP ARG TRP PRO GLU ALA LEU SEQRES 20 A 401 ASP VAL SER GLN HIS ILE HIS ASN ALA MET VAL GLU GLY SEQRES 21 A 401 ASP PHE GLN ALA TYR VAL TRP TRP TYR ILE ARG ARG SER SEQRES 22 A 401 TYR GLY PRO MET LYS GLU ASP GLY THR ILE SER LYS ARG SEQRES 23 A 401 GLY TYR ASN MET ALA HIS PHE SER LYS PHE VAL ARG PRO SEQRES 24 A 401 GLY TYR VAL ARG ILE ASP ALA THR LYS ASN PRO ASN ALA SEQRES 25 A 401 ASN VAL TYR VAL SER ALA TYR LYS GLY ASP ASN LYS VAL SEQRES 26 A 401 VAL ILE VAL ALA ILE ASN LYS SER ASN THR GLY VAL ASN SEQRES 27 A 401 GLN ASN PHE VAL LEU GLN ASN GLY SER ALA SER ASN VAL SEQRES 28 A 401 SER ARG TRP ILE THR SER SER SER SER ASN LEU GLN PRO SEQRES 29 A 401 GLY THR ASN LEU THR VAL SER GLY ASN HIS PHE TRP ALA SEQRES 30 A 401 HIS LEU PRO ALA GLN SER VAL THR THR PHE VAL VAL ASN SEQRES 31 A 401 ARG LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 401 MET ALA SER ASP VAL THR VAL ASN VAL SER ALA GLU LYS SEQRES 2 B 401 GLN VAL ILE ARG GLY PHE GLY GLY MET ASN HIS PRO ALA SEQRES 3 B 401 TRP ALA GLY ASP LEU THR ALA ALA GLN ARG GLU THR ALA SEQRES 4 B 401 PHE GLY ASN GLY GLN ASN GLN LEU GLY PHE SER ILE LEU SEQRES 5 B 401 ARG ILE HIS VAL ASP GLU ASN ARG ASN ASN TRP TYR LYS SEQRES 6 B 401 GLU VAL GLU THR ALA LYS SER ALA VAL LYS HIS GLY ALA SEQRES 7 B 401 ILE VAL PHE ALA SER PRO TRP ASN PRO PRO SER ASP MET SEQRES 8 B 401 VAL GLU THR PHE ASN ARG ASN GLY ASP THR SER ALA LYS SEQRES 9 B 401 ARG LEU LYS TYR ASN LYS TYR ALA ALA TYR ALA GLN HIS SEQRES 10 B 401 LEU ASN ASP PHE VAL THR PHE MET LYS ASN ASN GLY VAL SEQRES 11 B 401 ASN LEU TYR ALA ILE SER VAL GLN ASN GLU PRO ASP TYR SEQRES 12 B 401 ALA HIS GLU TRP THR TRP TRP THR PRO GLN GLU ILE LEU SEQRES 13 B 401 ARG PHE MET ARG GLU ASN ALA GLY SER ILE ASN ALA ARG SEQRES 14 B 401 VAL ILE ALA PRO GLU SER PHE GLN TYR LEU LYS ASN LEU SEQRES 15 B 401 SER ASP PRO ILE LEU ASN ASP PRO GLN ALA LEU ALA ASN SEQRES 16 B 401 MET ASP ILE LEU GLY THR HIS LEU TYR GLY THR GLN VAL SEQRES 17 B 401 SER GLN PHE PRO TYR PRO LEU PHE LYS GLN LYS GLY ALA SEQRES 18 B 401 GLY LYS ASP LEU TRP MET THR GLU VAL TYR TYR PRO ASN SEQRES 19 B 401 SER ASP THR ASN SER ALA ASP ARG TRP PRO GLU ALA LEU SEQRES 20 B 401 ASP VAL SER GLN HIS ILE HIS ASN ALA MET VAL GLU GLY SEQRES 21 B 401 ASP PHE GLN ALA TYR VAL TRP TRP TYR ILE ARG ARG SER SEQRES 22 B 401 TYR GLY PRO MET LYS GLU ASP GLY THR ILE SER LYS ARG SEQRES 23 B 401 GLY TYR ASN MET ALA HIS PHE SER LYS PHE VAL ARG PRO SEQRES 24 B 401 GLY TYR VAL ARG ILE ASP ALA THR LYS ASN PRO ASN ALA SEQRES 25 B 401 ASN VAL TYR VAL SER ALA TYR LYS GLY ASP ASN LYS VAL SEQRES 26 B 401 VAL ILE VAL ALA ILE ASN LYS SER ASN THR GLY VAL ASN SEQRES 27 B 401 GLN ASN PHE VAL LEU GLN ASN GLY SER ALA SER ASN VAL SEQRES 28 B 401 SER ARG TRP ILE THR SER SER SER SER ASN LEU GLN PRO SEQRES 29 B 401 GLY THR ASN LEU THR VAL SER GLY ASN HIS PHE TRP ALA SEQRES 30 B 401 HIS LEU PRO ALA GLN SER VAL THR THR PHE VAL VAL ASN SEQRES 31 B 401 ARG LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HELIX 1 1 HIS A 24 GLY A 29 1 6 HELIX 2 2 THR A 32 GLY A 41 1 10 HELIX 3 3 ASN A 62 LYS A 65 5 4 HELIX 4 4 GLU A 66 HIS A 76 1 11 HELIX 5 5 PRO A 88 ASP A 90 5 3 HELIX 6 6 LYS A 110 ASN A 128 1 19 HELIX 7 7 THR A 151 ASN A 162 1 12 HELIX 8 8 LEU A 179 LEU A 182 5 4 HELIX 9 9 SER A 183 ASN A 188 1 6 HELIX 10 10 ASP A 189 MET A 196 1 8 HELIX 11 11 GLN A 207 PHE A 211 5 5 HELIX 12 12 TYR A 213 GLY A 220 1 8 HELIX 13 13 ALA A 246 GLU A 259 1 14 HELIX 14 14 SER A 284 LYS A 295 1 12 HELIX 15 15 THR B 32 GLY B 41 1 10 HELIX 16 16 ASN B 62 LYS B 65 5 4 HELIX 17 17 GLU B 66 HIS B 76 1 11 HELIX 18 18 PRO B 88 ASP B 90 5 3 HELIX 19 19 LYS B 110 ASN B 127 1 18 HELIX 20 20 GLU B 140 ALA B 144 5 5 HELIX 21 21 THR B 151 ASN B 162 1 12 HELIX 22 22 LEU B 179 LEU B 182 5 4 HELIX 23 23 SER B 183 ASN B 188 1 6 HELIX 24 24 GLN B 191 MET B 196 1 6 HELIX 25 25 GLN B 207 PHE B 211 5 5 HELIX 26 26 TYR B 213 GLY B 220 1 8 HELIX 27 27 ALA B 246 GLY B 260 1 15 HELIX 28 28 SER B 284 LYS B 295 1 12 SHEET 1 A 3 SER A 360 PRO A 364 0 SHEET 2 A 3 ALA A 348 SER A 357 -1 N SER A 357 O SER A 360 SHEET 3 A 3 LEU A 368 THR A 369 -1 O LEU A 368 N VAL A 351 SHEET 1 B 9 SER A 360 PRO A 364 0 SHEET 2 B 9 ALA A 348 SER A 357 -1 N SER A 357 O SER A 360 SHEET 3 B 9 SER A 383 ARG A 391 -1 O ASN A 390 N SER A 349 SHEET 4 B 9 LYS A 324 ASN A 331 -1 N ALA A 329 O THR A 385 SHEET 5 B 9 VAL A 314 GLY A 321 -1 N SER A 317 O VAL A 328 SHEET 6 B 9 VAL A 302 ALA A 306 -1 N VAL A 302 O LYS A 320 SHEET 7 B 9 VAL A 5 VAL A 15 -1 N LYS A 13 O ARG A 303 SHEET 8 B 9 VAL A 337 GLN A 344 1 O VAL A 342 N VAL A 7 SHEET 9 B 9 HIS A 374 LEU A 379 -1 O PHE A 375 N PHE A 341 SHEET 1 C 9 GLY A 18 MET A 22 0 SHEET 2 C 9 ILE A 51 VAL A 56 1 O ARG A 53 N GLY A 21 SHEET 3 C 9 ILE A 79 PRO A 84 1 O ILE A 79 N LEU A 52 SHEET 4 C 9 ALA A 134 SER A 136 1 O SER A 136 N ALA A 82 SHEET 5 C 9 ARG A 169 SER A 175 1 O ARG A 169 N ILE A 135 SHEET 6 C 9 ILE A 198 HIS A 202 1 O HIS A 202 N SER A 175 SHEET 7 C 9 ASP A 224 VAL A 230 1 O ASP A 224 N LEU A 199 SHEET 8 C 9 ALA A 264 TYR A 269 1 O VAL A 266 N MET A 227 SHEET 9 C 9 GLY A 18 MET A 22 1 N GLY A 20 O TRP A 267 SHEET 1 D 2 VAL A 92 THR A 94 0 SHEET 2 D 2 LYS A 104 LEU A 106 -1 O ARG A 105 N GLU A 93 SHEET 1 E 3 SER B 360 PRO B 364 0 SHEET 2 E 3 ALA B 348 SER B 357 -1 N SER B 357 O SER B 360 SHEET 3 E 3 LEU B 368 THR B 369 -1 O LEU B 368 N VAL B 351 SHEET 1 F 9 SER B 360 PRO B 364 0 SHEET 2 F 9 ALA B 348 SER B 357 -1 N SER B 357 O SER B 360 SHEET 3 F 9 SER B 383 ARG B 391 -1 O ASN B 390 N SER B 349 SHEET 4 F 9 LYS B 324 ASN B 331 -1 N ALA B 329 O THR B 385 SHEET 5 F 9 VAL B 314 GLY B 321 -1 N GLY B 321 O LYS B 324 SHEET 6 F 9 VAL B 302 ALA B 306 -1 N VAL B 302 O LYS B 320 SHEET 7 F 9 VAL B 5 VAL B 15 -1 N LYS B 13 O ARG B 303 SHEET 8 F 9 VAL B 337 GLN B 344 1 O VAL B 342 N VAL B 5 SHEET 9 F 9 HIS B 374 LEU B 379 -1 O PHE B 375 N PHE B 341 SHEET 1 G 9 GLY B 18 ASN B 23 0 SHEET 2 G 9 ILE B 51 VAL B 56 1 O ARG B 53 N ASN B 23 SHEET 3 G 9 ILE B 79 PRO B 84 1 O ILE B 79 N LEU B 52 SHEET 4 G 9 ALA B 134 SER B 136 1 O SER B 136 N ALA B 82 SHEET 5 G 9 ARG B 169 SER B 175 1 O ARG B 169 N ILE B 135 SHEET 6 G 9 ILE B 198 HIS B 202 1 O HIS B 202 N SER B 175 SHEET 7 G 9 ASP B 224 VAL B 230 1 O ASP B 224 N LEU B 199 SHEET 8 G 9 ALA B 264 TYR B 269 1 O ALA B 264 N MET B 227 SHEET 9 G 9 GLY B 18 ASN B 23 1 N GLY B 20 O TRP B 267 SHEET 1 H 2 VAL B 92 THR B 94 0 SHEET 2 H 2 LYS B 104 LEU B 106 -1 O ARG B 105 N GLU B 93 CISPEP 1 ALA A 172 PRO A 173 0 -0.98 CISPEP 2 TYR A 232 PRO A 233 0 -0.54 CISPEP 3 TRP A 243 PRO A 244 0 3.77 CISPEP 4 ALA B 172 PRO B 173 0 3.82 CISPEP 5 TYR B 232 PRO B 233 0 -7.45 CISPEP 6 TRP B 243 PRO B 244 0 8.33 CRYST1 61.338 82.108 96.648 90.00 104.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016303 0.000000 0.004277 0.00000 SCALE2 0.000000 0.012179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010697 0.00000