HEADER OXIDOREDUCTASE 28-MAR-09 3GTT TITLE MOUSE SOD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS OXIDOREDUCTASE, MOUSE CU, ZN SUPEROXIDE DISMUTASE, ANTIOXIDANT, KEYWDS 2 METAL-BINDING, AMYOTROPHIC LATERAL SCLEROSIS, DISULFIDE BOND, KEYWDS 3 PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.SEETHARAMAN,A.B.TAYLOR,P.J.HART REVDAT 3 06-SEP-23 3GTT 1 REMARK LINK REVDAT 2 05-JAN-11 3GTT 1 JRNL REVDAT 1 08-SEP-10 3GTT 0 JRNL AUTH S.V.SEETHARAMAN,A.B.TAYLOR,S.HOLLOWAY,P.J.HART JRNL TITL STRUCTURES OF MOUSE SOD1 AND HUMAN/MOUSE SOD1 CHIMERAS. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 503 183 2010 JRNL REFN ISSN 0003-9861 JRNL PMID 20727846 JRNL DOI 10.1016/J.ABB.2010.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.5874 - 5.9993 0.93 3014 214 0.1703 0.1786 REMARK 3 2 5.9993 - 4.9736 0.97 3071 107 0.1481 0.1985 REMARK 3 3 4.9736 - 4.4144 0.93 2921 214 0.1167 0.1751 REMARK 3 4 4.4144 - 4.0439 0.97 3030 107 0.1127 0.1441 REMARK 3 5 4.0439 - 3.7730 0.93 2908 214 0.1239 0.1521 REMARK 3 6 3.7730 - 3.5627 0.97 3016 107 0.1324 0.1667 REMARK 3 7 3.5627 - 3.3925 0.93 2880 214 0.1458 0.1797 REMARK 3 8 3.3925 - 3.2509 0.97 3013 107 0.1452 0.1792 REMARK 3 9 3.2509 - 3.1302 0.93 2852 214 0.1573 0.2026 REMARK 3 10 3.1302 - 3.0257 0.97 2979 107 0.1671 0.2171 REMARK 3 11 3.0257 - 2.9339 0.93 2896 214 0.1757 0.2178 REMARK 3 12 2.9339 - 2.8523 0.96 2997 107 0.1954 0.2472 REMARK 3 13 2.8523 - 2.7791 0.97 2980 107 0.1987 0.2360 REMARK 3 14 2.7791 - 2.7128 0.93 2869 214 0.2014 0.2499 REMARK 3 15 2.7128 - 2.6525 0.97 2992 107 0.2027 0.2573 REMARK 3 16 2.6525 - 2.5972 0.93 2839 214 0.2061 0.2548 REMARK 3 17 2.5972 - 2.5462 0.97 2984 107 0.2149 0.2220 REMARK 3 18 2.5462 - 2.4990 0.93 2805 214 0.2154 0.2546 REMARK 3 19 2.4990 - 2.4552 0.97 3011 107 0.2219 0.2374 REMARK 3 20 2.4552 - 2.4142 0.93 2871 214 0.2275 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 33.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.86810 REMARK 3 B22 (A**2) : -6.88860 REMARK 3 B33 (A**2) : 6.45400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.1440 REMARK 3 OPERATOR: 1/2*H+1/2*K,3/2*H-1/2*K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6762 REMARK 3 ANGLE : 1.076 9114 REMARK 3 CHIRALITY : 0.068 990 REMARK 3 PLANARITY : 0.004 1248 REMARK 3 DIHEDRAL : 18.469 2436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL OPTICS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 30% PEG 1000, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.92050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.92050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.22700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.24750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.22700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.24750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.92050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.22700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.24750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.92050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.22700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.24750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 653 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO F 13 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 115 -169.66 -109.12 REMARK 500 SER C 25 -39.06 -39.26 REMARK 500 SER C 107 -35.13 -140.38 REMARK 500 PHE D 64 108.83 -58.94 REMARK 500 SER D 68 36.15 37.39 REMARK 500 SER D 98 99.82 -162.41 REMARK 500 ASP E 92 -50.19 -17.46 REMARK 500 LYS F 136 -55.28 -127.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 102.8 REMARK 620 3 HIS A 80 ND1 110.1 122.8 REMARK 620 4 ASP A 83 OD1 107.7 93.0 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 HIS B 71 ND1 99.7 REMARK 620 3 HIS B 80 ND1 108.3 125.9 REMARK 620 4 ASP B 83 OD1 109.3 99.1 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 ND1 REMARK 620 2 HIS C 71 ND1 103.2 REMARK 620 3 HIS C 80 ND1 114.4 127.2 REMARK 620 4 ASP C 83 OD1 99.9 94.4 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 63 ND1 REMARK 620 2 HIS D 71 ND1 92.4 REMARK 620 3 HIS D 80 ND1 106.9 123.0 REMARK 620 4 ASP D 83 OD1 110.9 102.6 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 63 ND1 REMARK 620 2 HIS E 71 ND1 102.4 REMARK 620 3 HIS E 80 ND1 115.2 118.5 REMARK 620 4 ASP E 83 OD1 103.6 100.1 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 110.2 REMARK 620 3 HIS F 80 ND1 103.9 127.3 REMARK 620 4 ASP F 83 OD1 104.9 94.5 114.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GTV RELATED DB: PDB REMARK 900 RELATED ID: 3GTW RELATED DB: PDB DBREF 3GTT A 1 153 UNP P08228 SODC_MOUSE 2 154 DBREF 3GTT B 1 153 UNP P08228 SODC_MOUSE 2 154 DBREF 3GTT C 1 153 UNP P08228 SODC_MOUSE 2 154 DBREF 3GTT D 1 153 UNP P08228 SODC_MOUSE 2 154 DBREF 3GTT E 1 153 UNP P08228 SODC_MOUSE 2 154 DBREF 3GTT F 1 153 UNP P08228 SODC_MOUSE 2 154 SEQRES 1 A 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 A 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 A 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 A 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 A 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 A 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 A 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 B 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 B 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 B 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 B 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 B 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 B 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 B 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 C 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 C 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 C 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 C 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 C 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 C 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 C 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 C 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 C 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 C 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 C 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 D 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 D 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 D 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 D 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 D 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 D 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 D 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 D 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 D 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 D 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 D 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 D 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 E 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 E 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 E 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 E 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 E 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 E 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 E 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 E 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 E 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 E 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 E 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 E 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 F 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 F 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 F 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA GLY LYS SEQRES 8 F 153 ASP GLY VAL ALA ASN VAL SER ILE GLU ASP ARG VAL ILE SEQRES 9 F 153 SER LEU SER GLY GLU HIS SER ILE ILE GLY ARG THR MET SEQRES 10 F 153 VAL VAL HIS GLU LYS GLN ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A 155 1 HET ZN B 155 1 HET ZN C 155 1 HET ZN D 155 1 HET ZN E 155 1 HET ZN F 155 1 HETNAM ZN ZINC ION FORMUL 7 ZN 6(ZN 2+) FORMUL 13 HOH *722(H2 O) HELIX 1 1 CYS A 57 GLY A 61 5 5 HELIX 2 2 ASN A 131 GLY A 138 1 8 HELIX 3 3 CYS B 57 GLY B 61 5 5 HELIX 4 4 GLU B 133 GLY B 138 1 6 HELIX 5 5 CYS C 57 GLY C 61 5 5 HELIX 6 6 GLU C 133 GLY C 138 1 6 HELIX 7 7 CYS D 57 GLY D 61 5 5 HELIX 8 8 CYS E 57 GLY E 61 5 5 HELIX 9 9 ASN E 131 GLY E 138 1 8 HELIX 10 10 CYS F 57 GLY F 61 5 5 HELIX 11 11 SER F 107 SER F 111 5 5 HELIX 12 12 GLU F 133 GLY F 138 1 6 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 VAL A 29 THR A 36 -1 N ILE A 35 O ALA A 95 SHEET 3 A 5 GLN A 15 GLN A 22 -1 N HIS A 19 O SER A 32 SHEET 4 A 5 MET A 2 LYS A 9 -1 N MET A 2 O GLN A 22 SHEET 5 A 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 B 4 ASP A 83 ALA A 89 0 SHEET 2 B 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 B 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 B 4 ARG A 143 VAL A 148 -1 O GLY A 147 N MET A 117 SHEET 1 C 5 ALA B 95 ASP B 101 0 SHEET 2 C 5 VAL B 29 THR B 36 -1 N LEU B 31 O ILE B 99 SHEET 3 C 5 GLN B 15 GLN B 22 -1 N HIS B 19 O SER B 32 SHEET 4 C 5 MET B 2 LYS B 9 -1 N LEU B 8 O GLY B 16 SHEET 5 C 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 D 4 ASP B 83 ALA B 89 0 SHEET 2 D 4 GLY B 41 HIS B 48 -1 N GLY B 41 O ALA B 89 SHEET 3 D 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 D 4 ARG B 143 VAL B 148 -1 O LEU B 144 N VAL B 119 SHEET 1 E 5 ALA C 95 ASP C 101 0 SHEET 2 E 5 VAL C 29 THR C 36 -1 N LEU C 31 O ILE C 99 SHEET 3 E 5 GLN C 15 GLN C 22 -1 N HIS C 19 O SER C 32 SHEET 4 E 5 MET C 2 LEU C 8 -1 N LEU C 8 O GLY C 16 SHEET 5 E 5 GLY C 150 ILE C 151 -1 O GLY C 150 N VAL C 5 SHEET 1 F 4 ASP C 83 ALA C 89 0 SHEET 2 F 4 GLY C 41 HIS C 48 -1 N GLY C 41 O ALA C 89 SHEET 3 F 4 THR C 116 HIS C 120 -1 O THR C 116 N HIS C 48 SHEET 4 F 4 ARG C 143 VAL C 148 -1 O ALA C 145 N VAL C 119 SHEET 1 G 5 ALA D 95 ASP D 101 0 SHEET 2 G 5 VAL D 29 THR D 36 -1 N LEU D 31 O ILE D 99 SHEET 3 G 5 GLN D 15 GLN D 22 -1 N HIS D 19 O SER D 32 SHEET 4 G 5 MET D 2 LEU D 8 -1 N ALA D 4 O PHE D 20 SHEET 5 G 5 GLY D 150 ILE D 151 -1 O GLY D 150 N VAL D 5 SHEET 1 H 4 ASP D 83 ALA D 89 0 SHEET 2 H 4 GLY D 41 HIS D 48 -1 N GLY D 41 O ALA D 89 SHEET 3 H 4 THR D 116 HIS D 120 -1 O THR D 116 N HIS D 48 SHEET 4 H 4 ARG D 143 VAL D 148 -1 O GLY D 147 N MET D 117 SHEET 1 I 5 ALA E 95 ASP E 101 0 SHEET 2 I 5 VAL E 29 THR E 36 -1 N ILE E 35 O ALA E 95 SHEET 3 I 5 GLN E 15 GLN E 22 -1 N GLN E 15 O THR E 36 SHEET 4 I 5 MET E 2 LEU E 8 -1 N CYS E 6 O ILE E 18 SHEET 5 I 5 GLY E 150 ILE E 151 -1 O GLY E 150 N VAL E 5 SHEET 1 J 4 ASP E 83 ALA E 89 0 SHEET 2 J 4 GLY E 41 HIS E 48 -1 N GLY E 41 O ALA E 89 SHEET 3 J 4 THR E 116 HIS E 120 -1 O THR E 116 N HIS E 48 SHEET 4 J 4 ARG E 143 VAL E 148 -1 O GLY E 147 N MET E 117 SHEET 1 K 5 ALA F 95 ASP F 101 0 SHEET 2 K 5 VAL F 29 THR F 36 -1 N LEU F 31 O ILE F 99 SHEET 3 K 5 GLN F 15 GLN F 22 -1 N GLU F 21 O VAL F 30 SHEET 4 K 5 MET F 2 LEU F 8 -1 N CYS F 6 O ILE F 18 SHEET 5 K 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 L 4 ASP F 83 ALA F 89 0 SHEET 2 L 4 GLY F 41 HIS F 48 -1 N PHE F 45 O GLY F 85 SHEET 3 L 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 L 4 ARG F 143 VAL F 148 -1 O LEU F 144 N VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.64 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.90 SSBOND 3 CYS C 57 CYS C 146 1555 1555 2.84 SSBOND 4 CYS D 57 CYS D 146 1555 1555 2.83 SSBOND 5 CYS E 57 CYS E 146 1555 1555 2.79 SSBOND 6 CYS F 57 CYS F 146 1555 1555 2.75 LINK ND1 HIS A 63 ZN ZN A 155 1555 1555 2.17 LINK ND1 HIS A 71 ZN ZN A 155 1555 1555 2.28 LINK ND1 HIS A 80 ZN ZN A 155 1555 1555 2.13 LINK OD1 ASP A 83 ZN ZN A 155 1555 1555 2.00 LINK ND1 HIS B 63 ZN ZN B 155 1555 1555 2.14 LINK ND1 HIS B 71 ZN ZN B 155 1555 1555 2.28 LINK ND1 HIS B 80 ZN ZN B 155 1555 1555 2.20 LINK OD1 ASP B 83 ZN ZN B 155 1555 1555 1.94 LINK ND1 HIS C 63 ZN ZN C 155 1555 1555 2.24 LINK ND1 HIS C 71 ZN ZN C 155 1555 1555 2.25 LINK ND1 HIS C 80 ZN ZN C 155 1555 1555 2.33 LINK OD1 ASP C 83 ZN ZN C 155 1555 1555 1.99 LINK ND1 HIS D 63 ZN ZN D 155 1555 1555 2.15 LINK ND1 HIS D 71 ZN ZN D 155 1555 1555 2.43 LINK ND1 HIS D 80 ZN ZN D 155 1555 1555 2.21 LINK OD1 ASP D 83 ZN ZN D 155 1555 1555 1.99 LINK ND1 HIS E 63 ZN ZN E 155 1555 1555 2.20 LINK ND1 HIS E 71 ZN ZN E 155 1555 1555 2.34 LINK ND1 HIS E 80 ZN ZN E 155 1555 1555 2.10 LINK OD1 ASP E 83 ZN ZN E 155 1555 1555 1.91 LINK ND1 HIS F 63 ZN ZN F 155 1555 1555 2.25 LINK ND1 HIS F 71 ZN ZN F 155 1555 1555 2.12 LINK ND1 HIS F 80 ZN ZN F 155 1555 1555 2.27 LINK OD1 ASP F 83 ZN ZN F 155 1555 1555 1.97 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 4 HIS B 63 HIS B 71 HIS B 80 ASP B 83 SITE 1 AC3 5 HIS C 63 HIS C 71 HIS C 80 ASP C 83 SITE 2 AC3 5 LYS C 136 SITE 1 AC4 4 HIS D 63 HIS D 71 HIS D 80 ASP D 83 SITE 1 AC5 4 HIS E 63 HIS E 71 HIS E 80 ASP E 83 SITE 1 AC6 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 CRYST1 112.454 194.495 149.841 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006674 0.00000