HEADER HYDROLASE 30-MAR-09 3GUK TITLE T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- TITLE 2 TOLUENE BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RR1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P1403 KEYWDS T4 LYSOZYME, APOLAR CAVITY, BURIED CHARGE, LIGAND BINDING, KEYWDS 2 ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,B.W.MATTHEWS REVDAT 6 06-SEP-23 3GUK 1 REMARK REVDAT 5 13-OCT-21 3GUK 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3GUK 1 REMARK REVDAT 3 13-JUL-11 3GUK 1 VERSN REVDAT 2 06-OCT-09 3GUK 1 JRNL REVDAT 1 25-AUG-09 3GUK 0 JRNL AUTH L.LIU,W.A.BAASE,M.M.MICHAEL,B.W.MATTHEWS JRNL TITL USE OF STABILIZING MUTATIONS TO ENGINEER A CHARGED GROUP JRNL TITL 2 WITHIN A LIGAND-BINDING HYDROPHOBIC CAVITY IN T4 LYSOZYME. JRNL REF BIOCHEMISTRY V. 48 8842 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19663503 JRNL DOI 10.1021/BI900685J REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63000 REMARK 3 B22 (A**2) : 1.63000 REMARK 3 B33 (A**2) : -3.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.103 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2664 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3580 ; 1.228 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 5.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;33.752 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;16.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.744 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2004 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1322 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1839 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 0.677 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2582 ; 1.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 1.957 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 998 ; 3.021 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 12 1 REMARK 3 1 B 1 B 12 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 100 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 100 ; 0.11 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 26 4 REMARK 3 1 B 13 B 26 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 123 ; 0.24 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 123 ; 0.55 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 27 A 37 1 REMARK 3 1 B 27 B 37 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 79 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 3 A (A**2): 79 ; 0.11 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 38 A 50 4 REMARK 3 1 B 38 B 50 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 96 ; 0.32 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 96 ; 0.60 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 51 B 602 1 REMARK 3 1 B 51 B 602 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 910 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 5 A (A**2): 910 ; 0.10 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6731 13.5343 -5.4472 REMARK 3 T TENSOR REMARK 3 T11: -0.1684 T22: 0.1658 REMARK 3 T33: -0.0993 T12: -0.0170 REMARK 3 T13: -0.0327 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 15.8865 L22: 7.6645 REMARK 3 L33: 24.0846 L12: 1.1955 REMARK 3 L13: 3.7273 L23: 8.1780 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.0377 S13: 0.6007 REMARK 3 S21: -0.0615 S22: -0.5136 S23: 0.2408 REMARK 3 S31: -0.4850 S32: -2.4481 S33: 0.5066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7076 11.8542 12.9465 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.6007 REMARK 3 T33: 0.0260 T12: -0.3036 REMARK 3 T13: 0.1876 T23: -0.2497 REMARK 3 L TENSOR REMARK 3 L11: 7.1570 L22: 12.3857 REMARK 3 L33: 8.3108 L12: 1.6080 REMARK 3 L13: -0.5250 L23: 7.7766 REMARK 3 S TENSOR REMARK 3 S11: 0.1712 S12: -0.3728 S13: -0.1996 REMARK 3 S21: 2.1393 S22: -1.5404 S23: 1.2355 REMARK 3 S31: 0.8936 S32: -2.2618 S33: 1.3691 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0272 3.9727 -2.1015 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: -0.0914 REMARK 3 T33: -0.1367 T12: -0.1596 REMARK 3 T13: -0.0084 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.7466 L22: 1.9810 REMARK 3 L33: 8.8578 L12: -0.4982 REMARK 3 L13: 0.9640 L23: 1.4455 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1706 S13: -0.1652 REMARK 3 S21: 0.2613 S22: -0.0311 S23: 0.1055 REMARK 3 S31: 1.2066 S32: -0.8988 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 166 REMARK 3 RESIDUE RANGE : A 602 A 734 REMARK 3 RESIDUE RANGE : B 165 B 166 REMARK 3 RESIDUE RANGE : B 603 B 732 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0833 14.9118 -6.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0120 REMARK 3 T33: -0.0032 T12: 0.0215 REMARK 3 T13: -0.0152 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.7621 L22: 0.4449 REMARK 3 L33: 1.0613 L12: 0.4515 REMARK 3 L13: -0.0586 L23: -0.2286 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0327 S13: -0.0149 REMARK 3 S21: 0.0498 S22: 0.0208 S23: 0.0325 REMARK 3 S31: 0.0471 S32: 0.0234 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3947 25.3452 -6.8899 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: -0.1694 REMARK 3 T33: -0.0931 T12: 0.0023 REMARK 3 T13: 0.0106 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.5406 L22: 11.3160 REMARK 3 L33: 21.7261 L12: -0.4741 REMARK 3 L13: 5.7603 L23: 1.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.4127 S12: -0.0480 S13: 0.0264 REMARK 3 S21: 0.1755 S22: 0.0978 S23: 0.3776 REMARK 3 S31: -2.0189 S32: -0.7094 S33: 0.3149 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2406 30.1606 -25.4364 REMARK 3 T TENSOR REMARK 3 T11: -0.0713 T22: -0.1580 REMARK 3 T33: -0.0828 T12: 0.0540 REMARK 3 T13: -0.0241 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 10.6584 L22: 5.5548 REMARK 3 L33: 6.6884 L12: 2.1775 REMARK 3 L13: -4.4995 L23: -2.5649 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.7616 S13: 0.6857 REMARK 3 S21: -0.2621 S22: 0.1522 S23: -0.0652 REMARK 3 S31: -0.0489 S32: -0.2400 S33: -0.1040 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8158 20.4857 -10.1574 REMARK 3 T TENSOR REMARK 3 T11: -0.1120 T22: -0.0339 REMARK 3 T33: -0.1456 T12: -0.1025 REMARK 3 T13: 0.0287 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.9724 L22: 2.4835 REMARK 3 L33: 6.5654 L12: -0.0599 REMARK 3 L13: 1.8235 L23: 0.7997 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: 0.3490 S13: 0.0483 REMARK 3 S21: -0.0930 S22: 0.0447 S23: -0.1560 REMARK 3 S31: -0.6009 S32: 0.7858 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3GUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.14M MAGNESIUM/CALCIUM REMARK 280 SULFATE, 0.1M PIPES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.75300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.12950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.37650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 163 REMARK 465 LEU A 164 REMARK 465 ASN B 163 REMARK 465 LEU B 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 76.74 -101.71 REMARK 500 ASN A 55 78.70 -119.23 REMARK 500 CYS A 142 53.74 -119.31 REMARK 500 ILE B 29 74.29 -104.25 REMARK 500 ASN B 55 77.35 -119.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GUI RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3GUJ RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 BENZENE BINDING REMARK 900 RELATED ID: 3GUL RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 ETHYLBENZENE BINDING REMARK 900 RELATED ID: 3GUM RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 P-XYLENE BINDING REMARK 900 RELATED ID: 3GUN RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 ANILINE BINDING REMARK 900 RELATED ID: 3GUO RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PHENOL BINDING REMARK 900 RELATED ID: 3GUP RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PYRIDINE BINDING DBREF 3GUK A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 3GUK B 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 3GUK CYS A 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUK ASP A 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUK ALA A 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUK GLU A 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUK VAL A 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUK VAL A 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUK CYS A 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUK ASP A 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQADV 3GUK CYS B 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUK ASP B 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUK ALA B 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUK GLU B 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUK VAL B 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUK VAL B 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUK CYS B 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUK ASP B 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQRES 1 A 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 A 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 A 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 A 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 A 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 A 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 164 THR TRP ASP ALA TYR LYS ASN LEU SEQRES 1 B 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 B 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 B 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 B 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 B 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 B 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 164 THR TRP ASP ALA TYR LYS ASN LEU MODRES 3GUK CME A 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3GUK CME B 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 97 10 HET CME B 97 10 HET MBN A 501 14 HET CA A 165 1 HET CL A 166 1 HET CL A 167 1 HET MBN B 501 14 HET ACT B 165 4 HET ACT B 166 4 HET CL B 167 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM MBN TOLUENE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 MBN 2(C7 H8) FORMUL 4 CA CA 2+ FORMUL 5 CL 3(CL 1-) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *134(H2 O) HELIX 1 1 ASN A 2 GLY A 12 1 11 HELIX 2 2 ASP A 38 GLY A 51 1 14 HELIX 3 3 THR A 59 ASN A 81 1 23 HELIX 4 4 LYS A 83 LEU A 91 1 9 HELIX 5 5 ASP A 92 GLY A 107 1 16 HELIX 6 6 GLY A 107 GLY A 113 1 7 HELIX 7 7 PHE A 114 GLN A 123 1 10 HELIX 8 8 ARG A 125 LYS A 135 1 11 HELIX 9 9 SER A 136 CYS A 142 1 7 HELIX 10 10 CYS A 142 GLY A 156 1 15 HELIX 11 11 TRP A 158 LYS A 162 5 5 HELIX 12 12 ASN B 2 GLY B 12 1 11 HELIX 13 13 ASP B 38 GLY B 51 1 14 HELIX 14 14 THR B 59 ASN B 81 1 23 HELIX 15 15 LYS B 83 LEU B 91 1 9 HELIX 16 16 ASP B 92 GLY B 107 1 16 HELIX 17 17 GLY B 107 GLY B 113 1 7 HELIX 18 18 PHE B 114 GLN B 123 1 10 HELIX 19 19 ARG B 125 LYS B 135 1 11 HELIX 20 20 SER B 136 CYS B 142 1 7 HELIX 21 21 CYS B 142 GLY B 156 1 15 HELIX 22 22 TRP B 158 LYS B 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 SHEET 1 B 3 ARG B 14 LYS B 19 0 SHEET 2 B 3 TYR B 25 GLY B 28 -1 O THR B 26 N TYR B 18 SHEET 3 B 3 HIS B 31 THR B 34 -1 O LEU B 33 N TYR B 25 SSBOND 1 CYS A 21 CYS A 142 1555 1555 2.03 SSBOND 2 CYS B 21 CYS B 142 1555 1555 2.06 LINK C ARG A 96 N CME A 97 1555 1555 1.34 LINK C CME A 97 N ALA A 98 1555 1555 1.34 LINK C ARG B 96 N CME B 97 1555 1555 1.34 LINK C CME B 97 N ALA B 98 1555 1555 1.34 CISPEP 1 CYS A 54 ASN A 55 0 -15.93 CISPEP 2 CYS B 54 ASN B 55 0 -16.61 SITE 1 AC1 11 ILE A 78 LEU A 84 VAL A 87 TYR A 88 SITE 2 AC1 11 ALA A 99 GLU A 102 VAL A 103 VAL A 111 SITE 3 AC1 11 LEU A 118 LEU A 121 HOH A 601 SITE 1 AC2 9 ILE B 78 LEU B 84 VAL B 87 TYR B 88 SITE 2 AC2 9 ALA B 99 GLU B 102 VAL B 103 VAL B 111 SITE 3 AC2 9 LEU B 121 SITE 1 AC3 4 TYR A 88 ARG A 96 TYR B 88 ARG B 96 SITE 1 AC4 6 ARG A 76 LEU A 79 ARG A 80 ASP B 92 SITE 2 AC4 6 ALA B 93 HOH B 665 SITE 1 AC5 4 ASP A 92 ALA A 93 LEU B 79 ARG B 80 SITE 1 AC6 3 CYS A 142 ASP A 144 ARG A 145 SITE 1 AC7 3 CYS B 142 ASP B 144 ARG B 145 CRYST1 49.486 49.486 129.506 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007722 0.00000