HEADER TOXIN 30-MAR-09 3GUQ TITLE CRYSTAL STRUCTURE OF NOVEL CARCINOGENIC FACTOR OF H. PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-166 (UNP RESIDUES 21-192); COMPND 5 SYNONYM: NOVEL CARCINOGENIC FACTOR, TNF-A INDUCING FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: HP0596, HP_0596; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28(A) KEYWDS TNFA INDUCING FACTOR, LONG ALPHA HELIX, NOVEL CARCINOGENIC FACTOR, KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TSURUMURA,H.TSUGE,H.UTSUNOMIYA,D.KISE,T.KUZUHARA,H.FUJIKI, AUTHOR 2 M.SUGANUMA REVDAT 3 20-MAR-24 3GUQ 1 SEQADV REVDAT 2 13-JUL-11 3GUQ 1 VERSN REVDAT 1 22-SEP-09 3GUQ 0 JRNL AUTH H.TSUGE,T.TSURUMURA,H.UTSUNOMIYA,D.KISE,T.KUZUHARA, JRNL AUTH 2 T.WATANABE,H.FUJIKI,M.SUGANUMA JRNL TITL STRUCTURAL BASIS FOR THE HELICOBACTER PYLORI-CARCINOGENIC JRNL TITL 2 TNF-ALPHA-INDUCING PROTEIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 388 193 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19643085 JRNL DOI 10.1016/J.BBRC.2009.07.121 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 6779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 70.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.28000 REMARK 3 B22 (A**2) : 2.28000 REMARK 3 B33 (A**2) : -3.41000 REMARK 3 B12 (A**2) : 1.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.432 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1161 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1071 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1563 ; 1.844 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2504 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 9.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1265 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 217 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 302 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1270 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 738 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 29 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.319 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 706 ; 0.725 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1149 ; 1.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 455 ; 2.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 414 ; 3.653 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8024 12.6038 5.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.3535 REMARK 3 T33: 0.2717 T12: -0.0221 REMARK 3 T13: 0.1428 T23: -0.0885 REMARK 3 L TENSOR REMARK 3 L11: 12.2185 L22: 14.5284 REMARK 3 L33: 7.9021 L12: 3.7666 REMARK 3 L13: 2.5042 L23: 1.7388 REMARK 3 S TENSOR REMARK 3 S11: -0.2848 S12: -0.7915 S13: 1.1640 REMARK 3 S21: 0.5892 S22: 0.1093 S23: 0.8007 REMARK 3 S31: 0.0765 S32: -1.0778 S33: 0.1755 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5035 4.9958 2.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.4565 T22: 0.1936 REMARK 3 T33: 0.1911 T12: -0.0027 REMARK 3 T13: 0.1979 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 4.0879 L22: 8.7282 REMARK 3 L33: 9.6626 L12: -3.8703 REMARK 3 L13: -4.9816 L23: 9.7507 REMARK 3 S TENSOR REMARK 3 S11: -0.2818 S12: 0.3209 S13: -0.2272 REMARK 3 S21: 0.5818 S22: -0.2035 S23: -0.1279 REMARK 3 S31: 0.9023 S32: -0.3944 S33: 0.4853 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3110 6.4571 5.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.4111 T22: 0.0777 REMARK 3 T33: 0.2821 T12: 0.0153 REMARK 3 T13: 0.0908 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 5.2923 L22: 45.9760 REMARK 3 L33: 9.4344 L12: -10.5852 REMARK 3 L13: -2.9478 L23: 17.4114 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.1429 S13: -0.0483 REMARK 3 S21: -0.1190 S22: 0.4714 S23: -2.0739 REMARK 3 S31: -0.2043 S32: 0.1861 S33: -0.5644 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7900 21.5117 5.5849 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.2686 REMARK 3 T33: 0.2397 T12: 0.0019 REMARK 3 T13: -0.0373 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.8474 L22: 20.3855 REMARK 3 L33: 2.7652 L12: 2.5225 REMARK 3 L13: -10.3850 L23: 4.4927 REMARK 3 S TENSOR REMARK 3 S11: -0.4547 S12: 0.2021 S13: -0.0126 REMARK 3 S21: -0.5095 S22: 0.1785 S23: 0.1315 REMARK 3 S31: 0.1685 S32: -0.4677 S33: 0.2762 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1396 38.1169 6.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.2600 REMARK 3 T33: 0.2684 T12: 0.0100 REMARK 3 T13: 0.0131 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 5.1686 L22: 5.2367 REMARK 3 L33: 4.7167 L12: -6.2851 REMARK 3 L13: 0.1375 L23: 0.2065 REMARK 3 S TENSOR REMARK 3 S11: -0.1565 S12: -0.2790 S13: 0.7699 REMARK 3 S21: 0.1810 S22: 0.3004 S23: 0.0583 REMARK 3 S31: -0.2259 S32: 0.1919 S33: -0.1439 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0320 22.0483 8.3693 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.3014 REMARK 3 T33: 0.2534 T12: 0.0910 REMARK 3 T13: -0.0592 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.3326 L22: 8.4464 REMARK 3 L33: 6.0386 L12: 2.0637 REMARK 3 L13: -2.3089 L23: -3.9102 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0888 S13: -0.0829 REMARK 3 S21: 0.1487 S22: -0.0698 S23: -0.6374 REMARK 3 S31: 0.3676 S32: 0.5931 S33: 0.0691 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6187 1.5677 0.5098 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.0371 REMARK 3 T33: 0.4165 T12: 0.0477 REMARK 3 T13: 0.0692 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 15.5029 L22: 16.3899 REMARK 3 L33: 38.4458 L12: -2.1477 REMARK 3 L13: 6.0942 L23: 12.2508 REMARK 3 S TENSOR REMARK 3 S11: 1.1716 S12: 1.1040 S13: -1.8063 REMARK 3 S21: 0.3200 S22: -0.3749 S23: 0.2556 REMARK 3 S31: 1.8057 S32: 0.0476 S33: -0.7967 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9292 8.6297 5.9566 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.1502 REMARK 3 T33: 0.1555 T12: -0.0430 REMARK 3 T13: 0.1148 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 12.6437 L22: 11.8192 REMARK 3 L33: 16.7056 L12: 5.1159 REMARK 3 L13: 8.4488 L23: 7.6955 REMARK 3 S TENSOR REMARK 3 S11: 0.3491 S12: -0.6361 S13: -0.5029 REMARK 3 S21: 0.3183 S22: -0.6769 S23: 0.1734 REMARK 3 S31: 0.4780 S32: -0.6928 S33: 0.3278 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1077 25.2864 16.1597 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.3372 REMARK 3 T33: 0.2282 T12: 0.0825 REMARK 3 T13: -0.1844 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 9.7551 L22: 11.0878 REMARK 3 L33: 6.8459 L12: 5.8697 REMARK 3 L13: -6.4732 L23: -1.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.6237 S12: -0.5802 S13: 0.1173 REMARK 3 S21: 1.0867 S22: -0.3320 S23: -0.7301 REMARK 3 S31: 0.1773 S32: 0.6377 S33: -0.2917 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3315 31.4829 15.4838 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.3434 REMARK 3 T33: 0.2403 T12: 0.0553 REMARK 3 T13: -0.0603 T23: -0.0989 REMARK 3 L TENSOR REMARK 3 L11: 3.7597 L22: 11.3798 REMARK 3 L33: 3.1944 L12: 6.0409 REMARK 3 L13: -2.1354 L23: 0.4626 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.4137 S13: 0.4674 REMARK 3 S21: 0.8916 S22: -0.1202 S23: 0.1117 REMARK 3 S31: 0.0715 S32: 0.1213 S33: 0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 5% MPD, 0.1M HEPES (PH REMARK 280 7.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.10733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.05367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.05367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.10733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 PRO A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 GLN A 12 REMARK 465 ARG A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 PHE A 16 REMARK 465 LEU A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 161 REMARK 465 ASN A 162 REMARK 465 TYR A 163 REMARK 465 GLY A 164 REMARK 465 ASP A 165 REMARK 465 VAL A 166 REMARK 465 LYS A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 ILE A 170 REMARK 465 ALA A 171 REMARK 465 MET A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 160 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 152 O HOH A 199 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 142 CB - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 20 -158.88 48.90 REMARK 500 ARG A 28 -23.71 72.40 REMARK 500 GLU A 30 -90.77 -54.46 REMARK 500 TYR A 31 97.63 44.31 REMARK 500 ASN A 79 130.38 -36.22 REMARK 500 SER A 140 29.20 83.98 REMARK 500 ASP A 142 152.46 -23.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 20 PRO A 21 -36.16 REMARK 500 GLU A 30 TYR A 31 -147.88 REMARK 500 GLY A 44 LYS A 45 -144.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 STRUCTURE WAS DETERMINED DELTIPA, WHICH IS N-TERMINAL DELETION REMARK 999 MUTANT(2-LQACTC-7). DBREF 3GUQ A 7 172 UNP O25318 O25318_HELPY 21 192 SEQADV 3GUQ A UNP O25318 LEU 22 DELETION SEQADV 3GUQ A UNP O25318 GLN 23 DELETION SEQADV 3GUQ A UNP O25318 ALA 24 DELETION SEQADV 3GUQ A UNP O25318 CYS 25 DELETION SEQADV 3GUQ A UNP O25318 THR 26 DELETION SEQADV 3GUQ A UNP O25318 CYS 27 DELETION SEQRES 1 A 166 MET PRO ASN THR SER GLN ARG ASN SER PHE LEU GLN ASP SEQRES 2 A 166 VAL PRO TYR TRP MET LEU GLN ASN ARG SER GLU TYR ILE SEQRES 3 A 166 THR GLN GLY VAL ASP SER SER HIS ILE VAL ASP GLY LYS SEQRES 4 A 166 LYS THR GLU GLU ILE GLU LYS ILE ALA THR LYS ARG ALA SEQRES 5 A 166 THR ILE ARG VAL ALA GLN ASN ILE VAL HIS LYS LEU LYS SEQRES 6 A 166 GLU ALA TYR LEU SER LYS THR ASN ARG ILE LYS GLN LYS SEQRES 7 A 166 ILE THR ASN GLU MET PHE ILE GLN MET THR GLN PRO ILE SEQRES 8 A 166 TYR ASP SER LEU MET ASN VAL ASP ARG LEU GLY ILE TYR SEQRES 9 A 166 ILE ASN PRO ASN ASN GLU GLU VAL PHE ALA LEU VAL ARG SEQRES 10 A 166 ALA ARG GLY PHE ASP LYS ASP ALA LEU SER GLU GLY LEU SEQRES 11 A 166 HIS LYS MET SER LEU ASP ASN GLN ALA VAL SER ILE LEU SEQRES 12 A 166 VAL ALA LYS VAL GLU GLU ILE PHE LYS ASP SER VAL ASN SEQRES 13 A 166 TYR GLY ASP VAL LYS VAL PRO ILE ALA MET FORMUL 2 HOH *34(H2 O) HELIX 1 1 PRO A 21 LEU A 25 5 5 HELIX 2 2 LYS A 46 SER A 76 1 31 HELIX 3 3 THR A 86 MET A 93 1 8 HELIX 4 4 MET A 93 SER A 100 1 8 HELIX 5 5 ASP A 128 MET A 139 1 12 HELIX 6 6 ASP A 142 ASP A 159 1 18 SHEET 1 A 3 GLN A 34 HIS A 40 0 SHEET 2 A 3 GLU A 117 PHE A 127 -1 O VAL A 118 N SER A 39 SHEET 3 A 3 LEU A 101 ASN A 112 -1 N ASN A 112 O GLU A 117 CRYST1 69.518 69.518 69.161 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014385 0.008305 0.000000 0.00000 SCALE2 0.000000 0.016610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014459 0.00000