HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-MAR-09 3GUR TITLE CRYSTAL STRUCTURE OF MU CLASS GLUTATHIONE S-TRANSFERASE (GSTM2-2) IN TITLE 2 COMPLEX WITH GLUTATHIONE AND 6-(7-NITRO-2,1,3-BENZOXADIAZOL-4- TITLE 3 YLTHIO)HEXANOL (NBDHEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE MU 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GSTM2-2, GST CLASS-MU 2; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGST-1 KEYWDS GSTM2-2-INHIBITOR COMPLEX, GLUTATHIONE-NBDHEX COVALENT COMPLEX KEYWDS 2 (SIGMA-COMPLEX), TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.FEDERICI,C.LO STERZO,A.DI MATTEO,F.SCALONI,G.FEDERICI,A.M.CACCURI REVDAT 4 01-NOV-23 3GUR 1 REMARK REVDAT 3 01-NOV-17 3GUR 1 REMARK REVDAT 2 14-DEC-11 3GUR 1 HET HETNAM HETATM HEADER REVDAT 2 2 1 VERSN REVDAT 1 27-OCT-09 3GUR 0 JRNL AUTH L.FEDERICI,C.LO STERZO,S.PEZZOLA,A.DI MATTEO,F.SCALONI, JRNL AUTH 2 G.FEDERICI,A.M.CACCURI JRNL TITL STRUCTURAL BASIS FOR THE BINDING OF THE ANTICANCER COMPOUND JRNL TITL 2 6-(7-NITRO-2,1,3-BENZOXADIAZOL-4-YLTHIO)HEXANOL TO HUMAN JRNL TITL 3 GLUTATHIONE S-TRANSFERASES JRNL REF CANCER RES. V. 69 8025 2009 JRNL REFN ISSN 0008-5472 JRNL PMID 19808963 JRNL DOI 10.1158/0008-5472.CAN-09-1314 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 30437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7505 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10123 ; 1.454 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 863 ; 7.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 371 ;35.980 ;24.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1330 ;16.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1045 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5707 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3503 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5064 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4504 ; 0.557 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6995 ; 0.920 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3534 ; 1.218 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3128 ; 1.970 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 109.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 200MM NACL, 100MM MES , REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.68100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.00800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 109.68100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.00800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 LYS D 91 CG CD CE NZ REMARK 470 LYS D 121 CG CD CE NZ REMARK 470 LYS D 143 CG CD CE NZ REMARK 470 ARG D 205 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 48 CD GLU D 48 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -79.23 -55.63 REMARK 500 GLN A 71 117.95 76.44 REMARK 500 LEU A 85 51.45 -107.44 REMARK 500 GLN B 71 114.43 69.60 REMARK 500 GLN C 71 107.96 74.35 REMARK 500 LEU C 85 51.18 -99.86 REMARK 500 ASP D 39 -47.26 -132.17 REMARK 500 LYS D 49 -53.47 -23.40 REMARK 500 GLN D 71 114.83 77.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 37 PRO D 38 43.36 REMARK 500 PRO D 38 ASP D 39 -144.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYG A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYG C 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GUS RELATED DB: PDB DBREF 3GUR A 1 217 UNP P28161 GSTM2_HUMAN 2 218 DBREF 3GUR B 1 217 UNP P28161 GSTM2_HUMAN 2 218 DBREF 3GUR C 1 217 UNP P28161 GSTM2_HUMAN 2 218 DBREF 3GUR D 1 217 UNP P28161 GSTM2_HUMAN 2 218 SEQRES 1 A 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA SEQRES 2 A 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 A 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP SEQRES 4 A 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 A 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 A 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR SEQRES 7 A 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS SEQRES 8 A 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET SEQRES 9 A 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO SEQRES 10 A 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU SEQRES 11 A 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS SEQRES 12 A 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP SEQRES 13 A 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE SEQRES 14 A 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 A 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA SEQRES 16 A 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE SEQRES 17 A 217 THR LYS MET ALA VAL TRP GLY ASN LYS SEQRES 1 B 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA SEQRES 2 B 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 B 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP SEQRES 4 B 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 B 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 B 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR SEQRES 7 B 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS SEQRES 8 B 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET SEQRES 9 B 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO SEQRES 10 B 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU SEQRES 11 B 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS SEQRES 12 B 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP SEQRES 13 B 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE SEQRES 14 B 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 B 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA SEQRES 16 B 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE SEQRES 17 B 217 THR LYS MET ALA VAL TRP GLY ASN LYS SEQRES 1 C 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA SEQRES 2 C 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 C 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP SEQRES 4 C 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 C 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 C 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR SEQRES 7 C 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS SEQRES 8 C 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET SEQRES 9 C 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO SEQRES 10 C 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU SEQRES 11 C 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS SEQRES 12 C 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP SEQRES 13 C 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE SEQRES 14 C 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 C 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA SEQRES 16 C 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE SEQRES 17 C 217 THR LYS MET ALA VAL TRP GLY ASN LYS SEQRES 1 D 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA SEQRES 2 D 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 D 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP SEQRES 4 D 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 D 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 D 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR SEQRES 7 D 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS SEQRES 8 D 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET SEQRES 9 D 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO SEQRES 10 D 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU SEQRES 11 D 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS SEQRES 12 D 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP SEQRES 13 D 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE SEQRES 14 D 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 D 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA SEQRES 16 D 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE SEQRES 17 D 217 THR LYS MET ALA VAL TRP GLY ASN LYS HET BYG A 218 40 HET GSH B 218 20 HET BYG C 218 40 HET EDO C 219 4 HET GSH D 218 20 HETNAM BYG L-GAMMA-GLUTAMYL-S-{(4R)-4-[(6-HYDROXYHEXYL)SULFANYL]- HETNAM 2 BYG 7-NITRO-4,5-DIHYDRO-2,1,3-BENZOXADIAZOL-4-YL}-L- HETNAM 3 BYG CYSTEINYLGLYCINE HETNAM GSH GLUTATHIONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 BYG 2(C22 H32 N6 O10 S2) FORMUL 6 GSH 2(C10 H17 N3 O6 S) FORMUL 8 EDO C2 H6 O2 FORMUL 10 HOH *167(H2 O) HELIX 1 1 ARG A 10 LEU A 12 5 3 HELIX 2 2 ALA A 13 THR A 23 1 11 HELIX 3 3 ARG A 42 ASN A 47 1 6 HELIX 4 4 GLN A 71 HIS A 83 1 13 HELIX 5 5 SER A 89 TYR A 115 1 27 HELIX 6 6 ASP A 118 GLY A 142 1 25 HELIX 7 7 THR A 153 GLU A 170 1 18 HELIX 8 8 PHE A 177 GLY A 189 1 13 HELIX 9 9 LEU A 190 SER A 199 1 10 HELIX 10 10 ARG B 10 LEU B 12 5 3 HELIX 11 11 ALA B 13 THR B 23 1 11 HELIX 12 12 ARG B 42 ASN B 47 1 6 HELIX 13 13 GLN B 71 HIS B 83 1 13 HELIX 14 14 SER B 89 ASP B 116 1 28 HELIX 15 15 ASP B 118 GLY B 142 1 25 HELIX 16 16 PHE B 154 GLU B 170 1 17 HELIX 17 17 PHE B 177 LEU B 190 1 14 HELIX 18 18 LEU B 190 LYS B 198 1 9 HELIX 19 19 ARG C 10 LEU C 12 5 3 HELIX 20 20 ALA C 13 THR C 23 1 11 HELIX 21 21 ARG C 42 ASN C 47 1 6 HELIX 22 22 GLN C 71 HIS C 83 1 13 HELIX 23 23 SER C 89 ASP C 116 1 28 HELIX 24 24 ASP C 118 GLY C 142 1 25 HELIX 25 25 THR C 153 GLU C 170 1 18 HELIX 26 26 PHE C 177 LEU C 190 1 14 HELIX 27 27 LEU C 190 SER C 199 1 10 HELIX 28 28 ARG D 10 LEU D 12 5 3 HELIX 29 29 ALA D 13 THR D 23 1 11 HELIX 30 30 ARG D 42 ASN D 47 1 6 HELIX 31 31 GLU D 48 LEU D 52 5 5 HELIX 32 32 GLN D 71 HIS D 83 1 13 HELIX 33 33 SER D 89 ASP D 116 1 28 HELIX 34 34 ASP D 118 GLY D 142 1 25 HELIX 35 35 THR D 153 GLU D 170 1 18 HELIX 36 36 PHE D 177 LEU D 190 1 14 HELIX 37 37 LEU D 190 SER D 199 1 10 SHEET 1 A 4 TYR A 27 TYR A 32 0 SHEET 2 A 4 MET A 2 TRP A 7 1 N MET A 2 O GLU A 28 SHEET 3 A 4 TYR A 61 ASP A 64 -1 O TYR A 61 N GLY A 5 SHEET 4 A 4 HIS A 67 THR A 70 -1 O ILE A 69 N LEU A 62 SHEET 1 B 4 TYR B 27 TYR B 32 0 SHEET 2 B 4 MET B 2 TRP B 7 1 N MET B 2 O GLU B 28 SHEET 3 B 4 TYR B 61 ASP B 64 -1 O TYR B 61 N GLY B 5 SHEET 4 B 4 HIS B 67 THR B 70 -1 O ILE B 69 N LEU B 62 SHEET 1 C 4 TYR C 27 TYR C 32 0 SHEET 2 C 4 MET C 2 TRP C 7 1 N MET C 2 O GLU C 28 SHEET 3 C 4 TYR C 61 ASP C 64 -1 O TYR C 61 N GLY C 5 SHEET 4 C 4 HIS C 67 THR C 70 -1 O HIS C 67 N ASP C 64 SHEET 1 D 4 TYR D 27 TYR D 32 0 SHEET 2 D 4 MET D 2 TRP D 7 1 N MET D 2 O GLU D 28 SHEET 3 D 4 TYR D 61 ASP D 64 -1 O TYR D 61 N GLY D 5 SHEET 4 D 4 HIS D 67 THR D 70 -1 O ILE D 69 N LEU D 62 CISPEP 1 ALA A 37 PRO A 38 0 28.68 CISPEP 2 LEU A 59 PRO A 60 0 3.91 CISPEP 3 ARG A 205 PRO A 206 0 -3.02 CISPEP 4 ASN A 216 LYS A 217 0 -5.85 CISPEP 5 ALA B 37 PRO B 38 0 27.63 CISPEP 6 LEU B 59 PRO B 60 0 3.39 CISPEP 7 ARG B 205 PRO B 206 0 -4.24 CISPEP 8 ALA C 37 PRO C 38 0 15.36 CISPEP 9 LEU C 59 PRO C 60 0 4.46 CISPEP 10 ARG C 205 PRO C 206 0 -8.11 CISPEP 11 LEU D 59 PRO D 60 0 8.44 CISPEP 12 ARG D 205 PRO D 206 0 -6.12 SITE 1 AC1 20 TYR A 6 TRP A 7 GLY A 11 LEU A 12 SITE 2 AC1 20 TRP A 45 LYS A 49 ASN A 58 LEU A 59 SITE 3 AC1 20 PRO A 60 GLN A 71 SER A 72 ARG A 107 SITE 4 AC1 20 ALA A 111 TYR A 115 ARG A 165 PHE A 208 SITE 5 AC1 20 THR A 209 HOH A 220 HOH A 226 ASP B 105 SITE 1 AC2 13 ASP A 105 TYR B 6 TRP B 7 LEU B 12 SITE 2 AC2 13 ARG B 42 TRP B 45 LYS B 49 ASN B 58 SITE 3 AC2 13 LEU B 59 PRO B 60 GLN B 71 SER B 72 SITE 4 AC2 13 HOH B 220 SITE 1 AC3 19 TYR C 6 TRP C 7 GLY C 11 LEU C 12 SITE 2 AC3 19 MET C 34 ARG C 42 TRP C 45 LYS C 49 SITE 3 AC3 19 ASN C 58 LEU C 59 PRO C 60 GLN C 71 SITE 4 AC3 19 SER C 72 ARG C 107 ALA C 111 ARG C 165 SITE 5 AC3 19 PHE C 208 THR C 209 ASP D 105 SITE 1 AC4 5 ILE C 9 THR C 33 MET C 34 THR C 209 SITE 2 AC4 5 LYS C 210 SITE 1 AC5 11 ASP C 105 TYR D 6 TRP D 7 TRP D 45 SITE 2 AC5 11 ASN D 58 LEU D 59 PRO D 60 GLN D 71 SITE 3 AC5 11 SER D 72 HOH D 219 HOH D 226 CRYST1 56.750 78.016 219.362 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004559 0.00000