HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-MAR-09 3GUR
TITLE CRYSTAL STRUCTURE OF MU CLASS GLUTATHIONE S-TRANSFERASE (GSTM2-2) IN
TITLE 2 COMPLEX WITH GLUTATHIONE AND 6-(7-NITRO-2,1,3-BENZOXADIAZOL-4-
TITLE 3 YLTHIO)HEXANOL (NBDHEX)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE MU 2;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 SYNONYM: GSTM2-2, GST CLASS-MU 2;
COMPND 5 EC: 2.5.1.18;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGST-1
KEYWDS GSTM2-2-INHIBITOR COMPLEX, GLUTATHIONE-NBDHEX COVALENT COMPLEX
KEYWDS 2 (SIGMA-COMPLEX), TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR L.FEDERICI,C.LO STERZO,A.DI MATTEO,F.SCALONI,G.FEDERICI,A.M.CACCURI
REVDAT 4 01-NOV-23 3GUR 1 REMARK
REVDAT 3 01-NOV-17 3GUR 1 REMARK
REVDAT 2 14-DEC-11 3GUR 1 HET HETNAM HETATM HEADER
REVDAT 2 2 1 VERSN
REVDAT 1 27-OCT-09 3GUR 0
JRNL AUTH L.FEDERICI,C.LO STERZO,S.PEZZOLA,A.DI MATTEO,F.SCALONI,
JRNL AUTH 2 G.FEDERICI,A.M.CACCURI
JRNL TITL STRUCTURAL BASIS FOR THE BINDING OF THE ANTICANCER COMPOUND
JRNL TITL 2 6-(7-NITRO-2,1,3-BENZOXADIAZOL-4-YLTHIO)HEXANOL TO HUMAN
JRNL TITL 3 GLUTATHIONE S-TRANSFERASES
JRNL REF CANCER RES. V. 69 8025 2009
JRNL REFN ISSN 0008-5472
JRNL PMID 19808963
JRNL DOI 10.1158/0008-5472.CAN-09-1314
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0005
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.43
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9
REMARK 3 NUMBER OF REFLECTIONS : 30437
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.216
REMARK 3 R VALUE (WORKING SET) : 0.213
REMARK 3 FREE R VALUE : 0.273
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1606
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1939
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.73
REMARK 3 BIN R VALUE (WORKING SET) : 0.2500
REMARK 3 BIN FREE R VALUE SET COUNT : 110
REMARK 3 BIN FREE R VALUE : 0.3680
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 7181
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 124
REMARK 3 SOLVENT ATOMS : 167
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 42.10
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.74000
REMARK 3 B22 (A**2) : -1.16000
REMARK 3 B33 (A**2) : 1.89000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 2.070
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.875
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7505 ; 0.009 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10123 ; 1.454 ; 1.986
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 863 ; 7.350 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 371 ;35.980 ;24.124
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1330 ;16.017 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.461 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1045 ; 0.109 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5707 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3503 ; 0.198 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5064 ; 0.306 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.144 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.136 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.136 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4504 ; 0.557 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6995 ; 0.920 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3534 ; 1.218 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3128 ; 1.970 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3GUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09.
REMARK 100 THE DEPOSITION ID IS D_1000052331.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32108
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 109.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2
REMARK 200 DATA REDUNDANCY : 4.800
REMARK 200 R MERGE (I) : 0.08600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3200
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59
REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.10000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.010
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 1HNC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 200MM NACL, 100MM MES ,
REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.37500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.68100
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.00800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 109.68100
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.37500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.00800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18630 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LYS B 217
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 121 CG CD CE NZ
REMARK 470 LYS B 121 CG CD CE NZ
REMARK 470 LYS B 143 CG CD CE NZ
REMARK 470 LYS C 121 CG CD CE NZ
REMARK 470 LYS D 91 CG CD CE NZ
REMARK 470 LYS D 121 CG CD CE NZ
REMARK 470 LYS D 143 CG CD CE NZ
REMARK 470 ARG D 205 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU D 48 CD GLU D 48 OE2 -0.071
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 10 -79.23 -55.63
REMARK 500 GLN A 71 117.95 76.44
REMARK 500 LEU A 85 51.45 -107.44
REMARK 500 GLN B 71 114.43 69.60
REMARK 500 GLN C 71 107.96 74.35
REMARK 500 LEU C 85 51.18 -99.86
REMARK 500 ASP D 39 -47.26 -132.17
REMARK 500 LYS D 49 -53.47 -23.40
REMARK 500 GLN D 71 114.83 77.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ALA D 37 PRO D 38 43.36
REMARK 500 PRO D 38 ASP D 39 -144.76
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYG A 218
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 218
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYG C 218
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 219
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 218
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3GUS RELATED DB: PDB
DBREF 3GUR A 1 217 UNP P28161 GSTM2_HUMAN 2 218
DBREF 3GUR B 1 217 UNP P28161 GSTM2_HUMAN 2 218
DBREF 3GUR C 1 217 UNP P28161 GSTM2_HUMAN 2 218
DBREF 3GUR D 1 217 UNP P28161 GSTM2_HUMAN 2 218
SEQRES 1 A 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA
SEQRES 2 A 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER
SEQRES 3 A 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP
SEQRES 4 A 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU
SEQRES 5 A 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY
SEQRES 6 A 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR
SEQRES 7 A 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS
SEQRES 8 A 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET
SEQRES 9 A 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO
SEQRES 10 A 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU
SEQRES 11 A 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS
SEQRES 12 A 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP
SEQRES 13 A 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE
SEQRES 14 A 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP
SEQRES 15 A 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA
SEQRES 16 A 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE
SEQRES 17 A 217 THR LYS MET ALA VAL TRP GLY ASN LYS
SEQRES 1 B 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA
SEQRES 2 B 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER
SEQRES 3 B 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP
SEQRES 4 B 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU
SEQRES 5 B 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY
SEQRES 6 B 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR
SEQRES 7 B 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS
SEQRES 8 B 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET
SEQRES 9 B 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO
SEQRES 10 B 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU
SEQRES 11 B 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS
SEQRES 12 B 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP
SEQRES 13 B 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE
SEQRES 14 B 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP
SEQRES 15 B 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA
SEQRES 16 B 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE
SEQRES 17 B 217 THR LYS MET ALA VAL TRP GLY ASN LYS
SEQRES 1 C 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA
SEQRES 2 C 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER
SEQRES 3 C 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP
SEQRES 4 C 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU
SEQRES 5 C 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY
SEQRES 6 C 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR
SEQRES 7 C 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS
SEQRES 8 C 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET
SEQRES 9 C 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO
SEQRES 10 C 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU
SEQRES 11 C 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS
SEQRES 12 C 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP
SEQRES 13 C 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE
SEQRES 14 C 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP
SEQRES 15 C 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA
SEQRES 16 C 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE
SEQRES 17 C 217 THR LYS MET ALA VAL TRP GLY ASN LYS
SEQRES 1 D 217 PRO MET THR LEU GLY TYR TRP ASN ILE ARG GLY LEU ALA
SEQRES 2 D 217 HIS SER ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER
SEQRES 3 D 217 TYR GLU GLU LYS LYS TYR THR MET GLY ASP ALA PRO ASP
SEQRES 4 D 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU
SEQRES 5 D 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY
SEQRES 6 D 217 THR HIS LYS ILE THR GLN SER ASN ALA ILE LEU ARG TYR
SEQRES 7 D 217 ILE ALA ARG LYS HIS ASN LEU CYS GLY GLU SER GLU LYS
SEQRES 8 D 217 GLU GLN ILE ARG GLU ASP ILE LEU GLU ASN GLN PHE MET
SEQRES 9 D 217 ASP SER ARG MET GLN LEU ALA LYS LEU CYS TYR ASP PRO
SEQRES 10 D 217 ASP PHE GLU LYS LEU LYS PRO GLU TYR LEU GLN ALA LEU
SEQRES 11 D 217 PRO GLU MET LEU LYS LEU TYR SER GLN PHE LEU GLY LYS
SEQRES 12 D 217 GLN PRO TRP PHE LEU GLY ASP LYS ILE THR PHE VAL ASP
SEQRES 13 D 217 PHE ILE ALA TYR ASP VAL LEU GLU ARG ASN GLN VAL PHE
SEQRES 14 D 217 GLU PRO SER CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP
SEQRES 15 D 217 PHE ILE SER ARG PHE GLU GLY LEU GLU LYS ILE SER ALA
SEQRES 16 D 217 TYR MET LYS SER SER ARG PHE LEU PRO ARG PRO VAL PHE
SEQRES 17 D 217 THR LYS MET ALA VAL TRP GLY ASN LYS
HET BYG A 218 40
HET GSH B 218 20
HET BYG C 218 40
HET EDO C 219 4
HET GSH D 218 20
HETNAM BYG L-GAMMA-GLUTAMYL-S-{(4R)-4-[(6-HYDROXYHEXYL)SULFANYL]-
HETNAM 2 BYG 7-NITRO-4,5-DIHYDRO-2,1,3-BENZOXADIAZOL-4-YL}-L-
HETNAM 3 BYG CYSTEINYLGLYCINE
HETNAM GSH GLUTATHIONE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 5 BYG 2(C22 H32 N6 O10 S2)
FORMUL 6 GSH 2(C10 H17 N3 O6 S)
FORMUL 8 EDO C2 H6 O2
FORMUL 10 HOH *167(H2 O)
HELIX 1 1 ARG A 10 LEU A 12 5 3
HELIX 2 2 ALA A 13 THR A 23 1 11
HELIX 3 3 ARG A 42 ASN A 47 1 6
HELIX 4 4 GLN A 71 HIS A 83 1 13
HELIX 5 5 SER A 89 TYR A 115 1 27
HELIX 6 6 ASP A 118 GLY A 142 1 25
HELIX 7 7 THR A 153 GLU A 170 1 18
HELIX 8 8 PHE A 177 GLY A 189 1 13
HELIX 9 9 LEU A 190 SER A 199 1 10
HELIX 10 10 ARG B 10 LEU B 12 5 3
HELIX 11 11 ALA B 13 THR B 23 1 11
HELIX 12 12 ARG B 42 ASN B 47 1 6
HELIX 13 13 GLN B 71 HIS B 83 1 13
HELIX 14 14 SER B 89 ASP B 116 1 28
HELIX 15 15 ASP B 118 GLY B 142 1 25
HELIX 16 16 PHE B 154 GLU B 170 1 17
HELIX 17 17 PHE B 177 LEU B 190 1 14
HELIX 18 18 LEU B 190 LYS B 198 1 9
HELIX 19 19 ARG C 10 LEU C 12 5 3
HELIX 20 20 ALA C 13 THR C 23 1 11
HELIX 21 21 ARG C 42 ASN C 47 1 6
HELIX 22 22 GLN C 71 HIS C 83 1 13
HELIX 23 23 SER C 89 ASP C 116 1 28
HELIX 24 24 ASP C 118 GLY C 142 1 25
HELIX 25 25 THR C 153 GLU C 170 1 18
HELIX 26 26 PHE C 177 LEU C 190 1 14
HELIX 27 27 LEU C 190 SER C 199 1 10
HELIX 28 28 ARG D 10 LEU D 12 5 3
HELIX 29 29 ALA D 13 THR D 23 1 11
HELIX 30 30 ARG D 42 ASN D 47 1 6
HELIX 31 31 GLU D 48 LEU D 52 5 5
HELIX 32 32 GLN D 71 HIS D 83 1 13
HELIX 33 33 SER D 89 ASP D 116 1 28
HELIX 34 34 ASP D 118 GLY D 142 1 25
HELIX 35 35 THR D 153 GLU D 170 1 18
HELIX 36 36 PHE D 177 LEU D 190 1 14
HELIX 37 37 LEU D 190 SER D 199 1 10
SHEET 1 A 4 TYR A 27 TYR A 32 0
SHEET 2 A 4 MET A 2 TRP A 7 1 N MET A 2 O GLU A 28
SHEET 3 A 4 TYR A 61 ASP A 64 -1 O TYR A 61 N GLY A 5
SHEET 4 A 4 HIS A 67 THR A 70 -1 O ILE A 69 N LEU A 62
SHEET 1 B 4 TYR B 27 TYR B 32 0
SHEET 2 B 4 MET B 2 TRP B 7 1 N MET B 2 O GLU B 28
SHEET 3 B 4 TYR B 61 ASP B 64 -1 O TYR B 61 N GLY B 5
SHEET 4 B 4 HIS B 67 THR B 70 -1 O ILE B 69 N LEU B 62
SHEET 1 C 4 TYR C 27 TYR C 32 0
SHEET 2 C 4 MET C 2 TRP C 7 1 N MET C 2 O GLU C 28
SHEET 3 C 4 TYR C 61 ASP C 64 -1 O TYR C 61 N GLY C 5
SHEET 4 C 4 HIS C 67 THR C 70 -1 O HIS C 67 N ASP C 64
SHEET 1 D 4 TYR D 27 TYR D 32 0
SHEET 2 D 4 MET D 2 TRP D 7 1 N MET D 2 O GLU D 28
SHEET 3 D 4 TYR D 61 ASP D 64 -1 O TYR D 61 N GLY D 5
SHEET 4 D 4 HIS D 67 THR D 70 -1 O ILE D 69 N LEU D 62
CISPEP 1 ALA A 37 PRO A 38 0 28.68
CISPEP 2 LEU A 59 PRO A 60 0 3.91
CISPEP 3 ARG A 205 PRO A 206 0 -3.02
CISPEP 4 ASN A 216 LYS A 217 0 -5.85
CISPEP 5 ALA B 37 PRO B 38 0 27.63
CISPEP 6 LEU B 59 PRO B 60 0 3.39
CISPEP 7 ARG B 205 PRO B 206 0 -4.24
CISPEP 8 ALA C 37 PRO C 38 0 15.36
CISPEP 9 LEU C 59 PRO C 60 0 4.46
CISPEP 10 ARG C 205 PRO C 206 0 -8.11
CISPEP 11 LEU D 59 PRO D 60 0 8.44
CISPEP 12 ARG D 205 PRO D 206 0 -6.12
SITE 1 AC1 20 TYR A 6 TRP A 7 GLY A 11 LEU A 12
SITE 2 AC1 20 TRP A 45 LYS A 49 ASN A 58 LEU A 59
SITE 3 AC1 20 PRO A 60 GLN A 71 SER A 72 ARG A 107
SITE 4 AC1 20 ALA A 111 TYR A 115 ARG A 165 PHE A 208
SITE 5 AC1 20 THR A 209 HOH A 220 HOH A 226 ASP B 105
SITE 1 AC2 13 ASP A 105 TYR B 6 TRP B 7 LEU B 12
SITE 2 AC2 13 ARG B 42 TRP B 45 LYS B 49 ASN B 58
SITE 3 AC2 13 LEU B 59 PRO B 60 GLN B 71 SER B 72
SITE 4 AC2 13 HOH B 220
SITE 1 AC3 19 TYR C 6 TRP C 7 GLY C 11 LEU C 12
SITE 2 AC3 19 MET C 34 ARG C 42 TRP C 45 LYS C 49
SITE 3 AC3 19 ASN C 58 LEU C 59 PRO C 60 GLN C 71
SITE 4 AC3 19 SER C 72 ARG C 107 ALA C 111 ARG C 165
SITE 5 AC3 19 PHE C 208 THR C 209 ASP D 105
SITE 1 AC4 5 ILE C 9 THR C 33 MET C 34 THR C 209
SITE 2 AC4 5 LYS C 210
SITE 1 AC5 11 ASP C 105 TYR D 6 TRP D 7 TRP D 45
SITE 2 AC5 11 ASN D 58 LEU D 59 PRO D 60 GLN D 71
SITE 3 AC5 11 SER D 72 HOH D 219 HOH D 226
CRYST1 56.750 78.016 219.362 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017621 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012818 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004559 0.00000