HEADER HYDROLASE 30-MAR-09 3GUU TITLE X-RAY STRUCTURE OF CANDIDA ANTARCTICA LIPASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 34362; SOURCE 4 OTHER_DETAILS: COMMERIAL ENZYME ROCHE CHIRAZYME L-5 KEYWDS CANDIDA, LIPASE, PROTEIN STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.-M.BRANDT,X.-G.LI,Y.NYMALM-REJSTROM,T.AIRENNE,L.T.KANERVA, AUTHOR 2 T.A.SALMINEN REVDAT 2 01-NOV-23 3GUU 1 REMARK DBREF REVDAT 1 31-MAR-10 3GUU 0 JRNL AUTH A.-M.BRANDT,X.-G.LI,Y.NYMALM-REJSTROM,T.AIRENNE,L.T.KANERVA, JRNL AUTH 2 T.A.SALMINEN JRNL TITL THE CRYSTAL STRUCTURE OF LIPASE A FROM CANDIDA ANTARCTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5208 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6789 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 8 ; 0.120 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9286 ; 1.713 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16 ; 3.689 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 6.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;32.190 ;25.018 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;15.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1035 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5250 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3377 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 17 ; 0.375 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4686 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 5 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 541 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4444 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7018 ; 1.339 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2689 ; 2.366 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2268 ; 3.487 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 12 A 441 5 REMARK 3 1 B 12 B 441 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1711 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1524 ; 0.33 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1711 ; 0.84 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1524 ; 1.16 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : INTEGRATE REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : 0.43400 REMARK 200 FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 12% GLYCEROL, REMARK 280 100MM TRIS-HCL PH 8.5 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.05000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 225.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.05000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 225.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.10000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 150.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ARG A -19 REMARK 465 VAL A -18 REMARK 465 SER A -17 REMARK 465 LEU A -16 REMARK 465 ARG A -15 REMARK 465 SER A -14 REMARK 465 ILE A -13 REMARK 465 THR A -12 REMARK 465 SER A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 ALA A -7 REMARK 465 ALA A -6 REMARK 465 THR A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 VAL A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 MET B -20 REMARK 465 ARG B -19 REMARK 465 VAL B -18 REMARK 465 SER B -17 REMARK 465 LEU B -16 REMARK 465 ARG B -15 REMARK 465 SER B -14 REMARK 465 ILE B -13 REMARK 465 THR B -12 REMARK 465 SER B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 ALA B -8 REMARK 465 ALA B -7 REMARK 465 ALA B -6 REMARK 465 THR B -5 REMARK 465 ALA B -4 REMARK 465 ALA B -3 REMARK 465 VAL B -2 REMARK 465 LEU B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 8 REMARK 465 ARG B 9 REMARK 465 ARG B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 441 O REMARK 470 PRO B 441 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 588 O HOH B 676 1.60 REMARK 500 O HOH A 608 O HOH A 665 1.75 REMARK 500 O HOH A 625 O HOH A 650 1.96 REMARK 500 CG1 ILE B 127 O HOH B 631 2.05 REMARK 500 O HOH B 607 O HOH B 667 2.08 REMARK 500 OE1 GLU A 365 O HOH A 453 2.13 REMARK 500 O HOH A 668 O HOH B 621 2.15 REMARK 500 OE1 GLN B 65 O HOH B 673 2.15 REMARK 500 ND1 HIS A 245 O3 GOL A 443 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 247 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 326 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A 367 CA - CB - CG ANGL. DEV. = -22.6 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU B 367 CA - CB - CG ANGL. DEV. = -22.1 DEGREES REMARK 500 LEU B 367 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 45.70 -95.86 REMARK 500 VAL A 120 -165.21 -115.54 REMARK 500 LEU A 121 -123.10 68.17 REMARK 500 ILE A 150 4.41 85.32 REMARK 500 SER A 184 -127.42 64.77 REMARK 500 ALA A 201 59.97 -140.79 REMARK 500 CYS A 273 -167.84 -110.33 REMARK 500 GLU A 308 49.56 -91.32 REMARK 500 ILE A 404 -63.62 -108.05 REMARK 500 TYR B 22 54.63 -96.82 REMARK 500 THR B 61 -157.65 -131.20 REMARK 500 VAL B 120 -159.36 -107.23 REMARK 500 LEU B 121 -126.99 69.79 REMARK 500 ILE B 150 -0.32 80.73 REMARK 500 SER B 184 -122.58 61.21 REMARK 500 CYS B 273 -161.53 -124.27 REMARK 500 GLU B 308 54.63 -95.42 REMARK 500 ILE B 404 -66.25 -124.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 443 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 443 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO UNP REFERENCE SEQUENCE DATABASE FOR THIS PROTEIN REMARK 999 AT THE TIME OF PROCESSING. REMARK 999 THIS SEQUENCE IS REFERRED IN CAN.J.BOT. VOL 73 (1995), PP. REMARK 999 S869-S875; HOEGH, S. ET. DBREF 3GUU A -20 441 PDB 3GUU 3GUU -20 441 DBREF 3GUU B -20 441 PDB 3GUU 3GUU -20 441 SEQRES 1 A 462 MET ARG VAL SER LEU ARG SER ILE THR SER LEU LEU ALA SEQRES 2 A 462 ALA ALA THR ALA ALA VAL LEU ALA ALA PRO ALA ALA GLU SEQRES 3 A 462 THR LEU ASP ARG ARG ALA ALA LEU PRO ASN PRO TYR ASP SEQRES 4 A 462 ASP PRO PHE TYR THR THR PRO SER ASN ILE GLY THR PHE SEQRES 5 A 462 ALA LYS GLY GLN VAL ILE GLN SER ARG LYS VAL PRO THR SEQRES 6 A 462 ASP ILE GLY ASN ALA ASN ASN ALA ALA SER PHE GLN LEU SEQRES 7 A 462 GLN TYR ARG THR THR ASN THR GLN ASN GLU ALA VAL ALA SEQRES 8 A 462 ASP VAL ALA THR VAL TRP ILE PRO ALA LYS PRO ALA SER SEQRES 9 A 462 PRO PRO LYS ILE PHE SER TYR GLN VAL TYR GLU ASP ALA SEQRES 10 A 462 THR ALA LEU ASP CYS ALA PRO SER TYR SER TYR LEU THR SEQRES 11 A 462 GLY LEU ASP GLN PRO ASN LYS VAL THR ALA VAL LEU ASP SEQRES 12 A 462 THR PRO ILE ILE ILE GLY TRP ALA LEU GLN GLN GLY TYR SEQRES 13 A 462 TYR VAL VAL SER SER ASP HIS GLU GLY PHE LYS ALA ALA SEQRES 14 A 462 PHE ILE ALA GLY TYR GLU GLU GLY MET ALA ILE LEU ASP SEQRES 15 A 462 GLY ILE ARG ALA LEU LYS ASN TYR GLN ASN LEU PRO SER SEQRES 16 A 462 ASP SER LYS VAL ALA LEU GLU GLY TYR SER GLY GLY ALA SEQRES 17 A 462 HIS ALA THR VAL TRP ALA THR SER LEU ALA GLU SER TYR SEQRES 18 A 462 ALA PRO GLU LEU ASN ILE VAL GLY ALA SER HIS GLY GLY SEQRES 19 A 462 THR PRO VAL SER ALA LYS ASP THR PHE THR PHE LEU ASN SEQRES 20 A 462 GLY GLY PRO PHE ALA GLY PHE ALA LEU ALA GLY VAL SER SEQRES 21 A 462 GLY LEU SER LEU ALA HIS PRO ASP MET GLU SER PHE ILE SEQRES 22 A 462 GLU ALA ARG LEU ASN ALA LYS GLY GLN ARG THR LEU LYS SEQRES 23 A 462 GLN ILE ARG GLY ARG GLY PHE CYS LEU PRO GLN VAL VAL SEQRES 24 A 462 LEU THR TYR PRO PHE LEU ASN VAL PHE SER LEU VAL ASN SEQRES 25 A 462 ASP THR ASN LEU LEU ASN GLU ALA PRO ILE ALA SER ILE SEQRES 26 A 462 LEU LYS GLN GLU THR VAL VAL GLN ALA GLU ALA SER TYR SEQRES 27 A 462 THR VAL SER VAL PRO LYS PHE PRO ARG PHE ILE TRP HIS SEQRES 28 A 462 ALA ILE PRO ASP GLU ILE VAL PRO TYR GLN PRO ALA ALA SEQRES 29 A 462 THR TYR VAL LYS GLU GLN CYS ALA LYS GLY ALA ASN ILE SEQRES 30 A 462 ASN PHE SER PRO TYR PRO ILE ALA GLU HIS LEU THR ALA SEQRES 31 A 462 GLU ILE PHE GLY LEU VAL PRO SER LEU TRP PHE ILE LYS SEQRES 32 A 462 GLN ALA PHE ASP GLY THR THR PRO LYS VAL ILE CYS GLY SEQRES 33 A 462 THR PRO ILE PRO ALA ILE ALA GLY ILE THR THR PRO SER SEQRES 34 A 462 ALA ASP GLN VAL LEU GLY SER ASP LEU ALA ASN GLN LEU SEQRES 35 A 462 ARG SER LEU ASP GLY LYS GLN SER ALA PHE GLY LYS PRO SEQRES 36 A 462 PHE GLY PRO ILE THR PRO PRO SEQRES 1 B 462 MET ARG VAL SER LEU ARG SER ILE THR SER LEU LEU ALA SEQRES 2 B 462 ALA ALA THR ALA ALA VAL LEU ALA ALA PRO ALA ALA GLU SEQRES 3 B 462 THR LEU ASP ARG ARG ALA ALA LEU PRO ASN PRO TYR ASP SEQRES 4 B 462 ASP PRO PHE TYR THR THR PRO SER ASN ILE GLY THR PHE SEQRES 5 B 462 ALA LYS GLY GLN VAL ILE GLN SER ARG LYS VAL PRO THR SEQRES 6 B 462 ASP ILE GLY ASN ALA ASN ASN ALA ALA SER PHE GLN LEU SEQRES 7 B 462 GLN TYR ARG THR THR ASN THR GLN ASN GLU ALA VAL ALA SEQRES 8 B 462 ASP VAL ALA THR VAL TRP ILE PRO ALA LYS PRO ALA SER SEQRES 9 B 462 PRO PRO LYS ILE PHE SER TYR GLN VAL TYR GLU ASP ALA SEQRES 10 B 462 THR ALA LEU ASP CYS ALA PRO SER TYR SER TYR LEU THR SEQRES 11 B 462 GLY LEU ASP GLN PRO ASN LYS VAL THR ALA VAL LEU ASP SEQRES 12 B 462 THR PRO ILE ILE ILE GLY TRP ALA LEU GLN GLN GLY TYR SEQRES 13 B 462 TYR VAL VAL SER SER ASP HIS GLU GLY PHE LYS ALA ALA SEQRES 14 B 462 PHE ILE ALA GLY TYR GLU GLU GLY MET ALA ILE LEU ASP SEQRES 15 B 462 GLY ILE ARG ALA LEU LYS ASN TYR GLN ASN LEU PRO SER SEQRES 16 B 462 ASP SER LYS VAL ALA LEU GLU GLY TYR SER GLY GLY ALA SEQRES 17 B 462 HIS ALA THR VAL TRP ALA THR SER LEU ALA GLU SER TYR SEQRES 18 B 462 ALA PRO GLU LEU ASN ILE VAL GLY ALA SER HIS GLY GLY SEQRES 19 B 462 THR PRO VAL SER ALA LYS ASP THR PHE THR PHE LEU ASN SEQRES 20 B 462 GLY GLY PRO PHE ALA GLY PHE ALA LEU ALA GLY VAL SER SEQRES 21 B 462 GLY LEU SER LEU ALA HIS PRO ASP MET GLU SER PHE ILE SEQRES 22 B 462 GLU ALA ARG LEU ASN ALA LYS GLY GLN ARG THR LEU LYS SEQRES 23 B 462 GLN ILE ARG GLY ARG GLY PHE CYS LEU PRO GLN VAL VAL SEQRES 24 B 462 LEU THR TYR PRO PHE LEU ASN VAL PHE SER LEU VAL ASN SEQRES 25 B 462 ASP THR ASN LEU LEU ASN GLU ALA PRO ILE ALA SER ILE SEQRES 26 B 462 LEU LYS GLN GLU THR VAL VAL GLN ALA GLU ALA SER TYR SEQRES 27 B 462 THR VAL SER VAL PRO LYS PHE PRO ARG PHE ILE TRP HIS SEQRES 28 B 462 ALA ILE PRO ASP GLU ILE VAL PRO TYR GLN PRO ALA ALA SEQRES 29 B 462 THR TYR VAL LYS GLU GLN CYS ALA LYS GLY ALA ASN ILE SEQRES 30 B 462 ASN PHE SER PRO TYR PRO ILE ALA GLU HIS LEU THR ALA SEQRES 31 B 462 GLU ILE PHE GLY LEU VAL PRO SER LEU TRP PHE ILE LYS SEQRES 32 B 462 GLN ALA PHE ASP GLY THR THR PRO LYS VAL ILE CYS GLY SEQRES 33 B 462 THR PRO ILE PRO ALA ILE ALA GLY ILE THR THR PRO SER SEQRES 34 B 462 ALA ASP GLN VAL LEU GLY SER ASP LEU ALA ASN GLN LEU SEQRES 35 B 462 ARG SER LEU ASP GLY LYS GLN SER ALA PHE GLY LYS PRO SEQRES 36 B 462 PHE GLY PRO ILE THR PRO PRO HET 1PE A 442 16 HET GOL A 443 6 HET 1PE B 442 16 HET SO4 B 443 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1PE 2(C10 H22 O6) FORMUL 4 GOL C3 H8 O3 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *499(H2 O) HELIX 1 1 ASN A 15 THR A 23 5 9 HELIX 2 2 ASN A 27 PHE A 31 5 5 HELIX 3 3 THR A 44 ASN A 50 1 7 HELIX 4 4 ALA A 98 CYS A 101 5 4 HELIX 5 5 ALA A 102 LEU A 108 1 7 HELIX 6 6 ASN A 115 VAL A 120 5 6 HELIX 7 7 LEU A 121 GLN A 133 1 13 HELIX 8 8 ALA A 151 GLN A 170 1 20 HELIX 9 9 SER A 184 ALA A 201 1 18 HELIX 10 10 SER A 217 ASN A 226 1 10 HELIX 11 11 PHE A 230 HIS A 245 1 16 HELIX 12 12 HIS A 245 ALA A 254 1 10 HELIX 13 13 ASN A 257 ARG A 268 1 12 HELIX 14 14 CYS A 273 TYR A 281 1 9 HELIX 15 15 ASN A 285 VAL A 290 5 6 HELIX 16 16 ASN A 294 GLU A 298 5 5 HELIX 17 17 PRO A 300 GLU A 308 1 9 HELIX 18 18 PRO A 338 LYS A 352 1 15 HELIX 19 19 GLU A 365 GLY A 373 1 9 HELIX 20 20 GLY A 373 GLY A 387 1 15 HELIX 21 21 SER A 408 GLY A 414 1 7 HELIX 22 22 GLY A 414 LEU A 424 1 11 HELIX 23 23 ASN B 15 THR B 23 5 9 HELIX 24 24 ASN B 27 PHE B 31 5 5 HELIX 25 25 THR B 44 ASN B 51 1 8 HELIX 26 26 ALA B 98 CYS B 101 5 4 HELIX 27 27 ALA B 102 LEU B 108 1 7 HELIX 28 28 ASN B 115 VAL B 120 5 6 HELIX 29 29 ASP B 122 GLN B 133 1 12 HELIX 30 30 ALA B 151 GLN B 170 1 20 HELIX 31 31 SER B 184 ALA B 201 1 18 HELIX 32 32 SER B 217 ASN B 226 1 10 HELIX 33 33 PHE B 230 HIS B 245 1 16 HELIX 34 34 HIS B 245 ALA B 254 1 10 HELIX 35 35 ASN B 257 GLY B 269 1 13 HELIX 36 36 CYS B 273 TYR B 281 1 9 HELIX 37 37 ASN B 285 VAL B 290 5 6 HELIX 38 38 ASN B 294 GLU B 298 5 5 HELIX 39 39 PRO B 300 LYS B 306 1 7 HELIX 40 40 PRO B 338 LYS B 352 1 15 HELIX 41 41 GLU B 365 GLY B 373 1 9 HELIX 42 42 GLY B 373 GLY B 387 1 15 HELIX 43 43 SER B 408 GLY B 414 1 7 HELIX 44 44 GLY B 414 SER B 423 1 10 SHEET 1 A 9 VAL A 36 LYS A 41 0 SHEET 2 A 9 ALA A 53 THR A 62 -1 O GLN A 58 N GLN A 38 SHEET 3 A 9 ALA A 68 ILE A 77 -1 O VAL A 69 N THR A 61 SHEET 4 A 9 TYR A 136 SER A 140 -1 O SER A 139 N THR A 74 SHEET 5 A 9 LYS A 86 GLN A 91 1 N PHE A 88 O TYR A 136 SHEET 6 A 9 LYS A 177 TYR A 183 1 O ALA A 179 N SER A 89 SHEET 7 A 9 ASN A 205 GLY A 212 1 O VAL A 207 N VAL A 178 SHEET 8 A 9 PRO A 325 ALA A 331 1 O PHE A 327 N ALA A 209 SHEET 9 A 9 ASN A 355 TYR A 361 1 O ASN A 357 N ARG A 326 SHEET 1 B 9 VAL B 36 LYS B 41 0 SHEET 2 B 9 ALA B 53 THR B 62 -1 O GLN B 58 N ILE B 37 SHEET 3 B 9 ALA B 68 ILE B 77 -1 O VAL B 69 N THR B 61 SHEET 4 B 9 TYR B 136 SER B 140 -1 O SER B 139 N THR B 74 SHEET 5 B 9 LYS B 86 GLN B 91 1 N PHE B 88 O TYR B 136 SHEET 6 B 9 LYS B 177 TYR B 183 1 O LYS B 177 N ILE B 87 SHEET 7 B 9 ASN B 205 GLY B 212 1 O VAL B 207 N VAL B 178 SHEET 8 B 9 PRO B 325 ALA B 331 1 O PHE B 327 N HIS B 211 SHEET 9 B 9 ASN B 355 TYR B 361 1 O SER B 359 N ILE B 328 SSBOND 1 CYS A 101 CYS A 273 1555 1555 1.96 SSBOND 2 CYS A 350 CYS A 394 1555 1555 2.07 SSBOND 3 CYS B 101 CYS B 273 1555 1555 2.05 SSBOND 4 CYS B 350 CYS B 394 1555 1555 2.10 CISPEP 1 SER A 83 PRO A 84 0 -2.19 CISPEP 2 ALA A 299 PRO A 300 0 4.35 CISPEP 3 SER B 83 PRO B 84 0 -1.77 CISPEP 4 ALA B 299 PRO B 300 0 1.46 SITE 1 AC1 11 ASP A 95 PHE A 149 SER A 184 GLY A 185 SITE 2 AC1 11 ALA A 218 THR A 221 PHE A 222 PHE A 233 SITE 3 AC1 11 LEU A 241 LEU A 296 PHE A 431 SITE 1 AC2 7 GLN A 65 HIS A 245 PRO A 246 ASP A 247 SITE 2 AC2 7 MET A 248 PRO A 300 ILE A 304 SITE 1 AC3 9 ASP B 95 SER B 184 GLY B 185 ALA B 218 SITE 2 AC3 9 THR B 221 PHE B 222 PHE B 233 VAL B 238 SITE 3 AC3 9 LEU B 296 SITE 1 AC4 4 HIS B 245 PRO B 246 ASP B 247 MET B 248 CRYST1 92.100 92.100 300.400 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003329 0.00000