HEADER HYDROLASE 30-MAR-09 3GUX TITLE CRYSTAL STRUCTURE OF A PUTATIVE ZN-DEPENDENT EXOPEPTIDASE (BVU_1317) TITLE 2 FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZN-DEPENDENT EXOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEUCINE AMINOPEPTIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 ATCC: 8482; SOURCE 5 GENE: BVU_1317, YP_001298628.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS AMINOPEPTIDASE, PHOSPHORYLASE/HYDROLASE-LIKE FOLD, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3GUX 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GUX 1 REMARK LINK REVDAT 4 25-OCT-17 3GUX 1 REMARK REVDAT 3 13-JUL-11 3GUX 1 VERSN REVDAT 2 23-MAR-11 3GUX 1 HEADER TITLE KEYWDS REVDAT 1 07-APR-09 3GUX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ZN-DEPENDENT EXOPEPTIDASE JRNL TITL 2 (YP_001298628.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 55877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 2.80000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4028 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2649 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.745 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6449 ; 1.280 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 4.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;36.160 ;24.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;11.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 2.127 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1031 ; 0.636 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4000 ; 3.214 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 4.983 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1471 ; 6.563 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5087 36.6073 120.8205 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.4036 REMARK 3 T33: 0.1292 T12: -0.1873 REMARK 3 T13: 0.0414 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 2.6659 L22: 4.3897 REMARK 3 L33: 9.4995 L12: 1.4514 REMARK 3 L13: 2.4402 L23: 5.3881 REMARK 3 S TENSOR REMARK 3 S11: -0.3614 S12: -0.0662 S13: 0.1977 REMARK 3 S21: -0.9383 S22: 0.5427 S23: -0.1814 REMARK 3 S31: -1.4282 S32: 1.0091 S33: -0.1813 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6189 20.2426 85.3024 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0749 REMARK 3 T33: 0.1057 T12: 0.0684 REMARK 3 T13: -0.0062 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1845 L22: 1.6226 REMARK 3 L33: 3.2353 L12: -0.1714 REMARK 3 L13: 0.1090 L23: -0.7239 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: -0.1648 S13: -0.0048 REMARK 3 S21: 0.2258 S22: 0.2561 S23: 0.0324 REMARK 3 S31: -0.3384 S32: -0.3259 S33: -0.0974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.ACETATE ION AND ETHYLENE GLYCOL MOLECULE FROM CRYSTALLIZATION REMARK 3 AND CROPROTECTION CONDITIONS ARE MODELED IN THE STRUCTURE. 5.A REMARK 3 RAMACHANDRAN OUTLIER IS OBSERVED ON RESIDUE 196 OF CHAIN A IN A REMARK 3 REGION OF POOR ELECTRON DENSITY. REMARK 4 REMARK 4 3GUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97916 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4ACETATE, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 7.1, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 140.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RESULTS FROM SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 28 REMARK 465 ASP A 29 REMARK 465 ARG A 30 REMARK 465 THR A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 VAL A 34 REMARK 465 ASP A 35 REMARK 465 LYS A 36 REMARK 465 TYR A 130 REMARK 465 ALA A 131 REMARK 465 ASP A 132 REMARK 465 ASN A 133 REMARK 465 ASP A 134 REMARK 465 PRO A 135 REMARK 465 ASP A 136 REMARK 465 PRO A 137 REMARK 465 LYS A 138 REMARK 465 ASN A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 THR A 142 REMARK 465 PRO A 143 REMARK 465 ILE A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 VAL A 147 REMARK 465 ASN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 184 REMARK 465 ILE A 185 REMARK 465 PRO A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 TYR A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 LYS A 192 REMARK 465 TYR A 193 REMARK 465 LYS A 194 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 ASN A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 PHE A 300 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 PHE A 303 REMARK 465 TRP A 304 REMARK 465 HIS A 305 REMARK 465 THR A 306 REMARK 465 VAL A 307 REMARK 465 ASN A 308 REMARK 465 ASP A 309 REMARK 465 THR A 310 REMARK 465 MSE A 311 REMARK 465 GLU A 312 REMARK 465 GLY B 0 REMARK 465 GLY B 22 REMARK 465 ASN B 23 REMARK 465 SER B 24 REMARK 465 LYS B 25 REMARK 465 SER B 26 REMARK 465 ARG B 27 REMARK 465 ASN B 28 REMARK 465 ASP B 29 REMARK 465 ARG B 30 REMARK 465 THR B 31 REMARK 465 GLU B 32 REMARK 465 THR B 33 REMARK 465 VAL B 34 REMARK 465 ASP B 35 REMARK 465 LYS B 36 REMARK 465 TYR B 130 REMARK 465 ALA B 131 REMARK 465 ASP B 132 REMARK 465 ASN B 133 REMARK 465 ASP B 134 REMARK 465 PRO B 135 REMARK 465 ASP B 136 REMARK 465 PRO B 137 REMARK 465 LYS B 138 REMARK 465 ASN B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 THR B 142 REMARK 465 PRO B 143 REMARK 465 ILE B 144 REMARK 465 LEU B 145 REMARK 465 GLY B 146 REMARK 465 VAL B 147 REMARK 465 ASN B 148 REMARK 465 ASP B 149 REMARK 465 ILE B 185 REMARK 465 PRO B 186 REMARK 465 GLU B 187 REMARK 465 PHE B 188 REMARK 465 TYR B 189 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 LYS B 192 REMARK 465 TYR B 193 REMARK 465 LYS B 194 REMARK 465 GLN B 195 REMARK 465 ASP B 196 REMARK 465 ALA B 293 REMARK 465 GLY B 294 REMARK 465 ASN B 295 REMARK 465 PRO B 296 REMARK 465 GLN B 297 REMARK 465 SER B 298 REMARK 465 SER B 299 REMARK 465 PHE B 300 REMARK 465 GLY B 301 REMARK 465 SER B 302 REMARK 465 PHE B 303 REMARK 465 TRP B 304 REMARK 465 HIS B 305 REMARK 465 THR B 306 REMARK 465 VAL B 307 REMARK 465 ASN B 308 REMARK 465 ASP B 309 REMARK 465 THR B 310 REMARK 465 MSE B 311 REMARK 465 GLU B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 LYS A 40 CD CE NZ REMARK 470 GLN A 67 CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 82 CE NZ REMARK 470 LYS A 86 CD CE NZ REMARK 470 TYR A 88 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 GLN A 195 OE1 NE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 212 CD OE1 NE2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 LYS A 228 CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 ARG A 282 NE CZ NH1 NH2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 ASN A 313 CG OD1 ND2 REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 GLU B 37 OE1 OE2 REMARK 470 LYS B 40 NZ REMARK 470 ARG B 128 CD NE CZ NH1 NH2 REMARK 470 LYS B 166 NZ REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 212 CD OE1 NE2 REMARK 470 ARG B 282 CD NE CZ NH1 NH2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 LYS B 334 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 327 CG MSE B 327 SE -0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 282 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 196 1.75 -52.67 REMARK 500 PRO A 209 170.72 -59.72 REMARK 500 MSE A 224 67.22 61.63 REMARK 500 ALA A 242 46.98 -149.11 REMARK 500 LYS A 279 -60.69 -98.70 REMARK 500 ASN B 213 59.57 33.36 REMARK 500 MSE B 224 70.26 59.32 REMARK 500 ALA B 242 45.56 -146.48 REMARK 500 ALA B 242 47.39 -146.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390181 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 22-334 OF THE FULL LENGTH PROTEIN. DBREF 3GUX A 22 334 UNP A6KZZ2 A6KZZ2_BACV8 22 334 DBREF 3GUX B 22 334 UNP A6KZZ2 A6KZZ2_BACV8 22 334 SEQADV 3GUX GLY A 0 UNP A6KZZ2 EXPRESSION TAG SEQADV 3GUX GLY B 0 UNP A6KZZ2 EXPRESSION TAG SEQRES 1 A 314 GLY GLY ASN SER LYS SER ARG ASN ASP ARG THR GLU THR SEQRES 2 A 314 VAL ASP LYS GLU VAL ILE LYS ALA PRO GLU PHE ASP ALA SEQRES 3 A 314 ASP SER ALA TYR GLN TYR ILE GLN VAL GLN ALA ASP PHE SEQRES 4 A 314 GLY PRO ARG VAL PRO ASN THR GLN ALA HIS LYS GLU CYS SEQRES 5 A 314 GLY GLU TYR LEU ALA GLY GLN LEU GLU LYS PHE GLY ALA SEQRES 6 A 314 LYS VAL TYR ASN GLN TYR ALA ASP LEU ILE ALA TYR ASP SEQRES 7 A 314 GLY THR ILE LEU LYS SER ARG ASN ILE ILE GLY ALA TYR SEQRES 8 A 314 LYS PRO GLU SER LYS LYS ARG ILE LEU LEU CYS ALA HIS SEQRES 9 A 314 TRP ASP SER ARG PRO TYR ALA ASP ASN ASP PRO ASP PRO SEQRES 10 A 314 LYS ASN HIS HIS THR PRO ILE LEU GLY VAL ASN ASP GLY SEQRES 11 A 314 ALA SER GLY VAL GLY VAL LEU LEU GLU ILE ALA ARG GLN SEQRES 12 A 314 ILE GLN LYS GLU GLN PRO ALA LEU GLY ILE ASP ILE VAL SEQRES 13 A 314 PHE PHE ASP SER GLU ASP TYR GLY ILE PRO GLU PHE TYR SEQRES 14 A 314 ASP GLY LYS TYR LYS GLN ASP THR TRP CYS LEU GLY SER SEQRES 15 A 314 GLN TYR TRP ALA ARG THR PRO HIS VAL GLN ASN TYR ASN SEQRES 16 A 314 ALA ARG TYR GLY ILE LEU LEU ASP MSE VAL GLY GLY LYS SEQRES 17 A 314 ASP ALA THR PHE TYR TYR GLU GLY TYR SER ALA ARG THR SEQRES 18 A 314 ALA ARG SER GLU MSE LYS LYS ILE TRP LYS LYS ALA HIS SEQRES 19 A 314 GLU LEU GLY TYR GLY LYS TYR PHE VAL LYS GLU ASP GLY SEQRES 20 A 314 GLY GLU THR VAL ASP ASP HIS ILE TYR VAL ASN LYS LEU SEQRES 21 A 314 ALA ARG ILE PRO CYS VAL ASP ILE ILE ASN TYR ASP ALA SEQRES 22 A 314 GLY ASN PRO GLN SER SER PHE GLY SER PHE TRP HIS THR SEQRES 23 A 314 VAL ASN ASP THR MSE GLU ASN ILE ASP ARG ASN THR LEU SEQRES 24 A 314 LYS ALA VAL GLY GLN THR VAL MSE ASP VAL ILE TYR ASN SEQRES 25 A 314 GLU LYS SEQRES 1 B 314 GLY GLY ASN SER LYS SER ARG ASN ASP ARG THR GLU THR SEQRES 2 B 314 VAL ASP LYS GLU VAL ILE LYS ALA PRO GLU PHE ASP ALA SEQRES 3 B 314 ASP SER ALA TYR GLN TYR ILE GLN VAL GLN ALA ASP PHE SEQRES 4 B 314 GLY PRO ARG VAL PRO ASN THR GLN ALA HIS LYS GLU CYS SEQRES 5 B 314 GLY GLU TYR LEU ALA GLY GLN LEU GLU LYS PHE GLY ALA SEQRES 6 B 314 LYS VAL TYR ASN GLN TYR ALA ASP LEU ILE ALA TYR ASP SEQRES 7 B 314 GLY THR ILE LEU LYS SER ARG ASN ILE ILE GLY ALA TYR SEQRES 8 B 314 LYS PRO GLU SER LYS LYS ARG ILE LEU LEU CYS ALA HIS SEQRES 9 B 314 TRP ASP SER ARG PRO TYR ALA ASP ASN ASP PRO ASP PRO SEQRES 10 B 314 LYS ASN HIS HIS THR PRO ILE LEU GLY VAL ASN ASP GLY SEQRES 11 B 314 ALA SER GLY VAL GLY VAL LEU LEU GLU ILE ALA ARG GLN SEQRES 12 B 314 ILE GLN LYS GLU GLN PRO ALA LEU GLY ILE ASP ILE VAL SEQRES 13 B 314 PHE PHE ASP SER GLU ASP TYR GLY ILE PRO GLU PHE TYR SEQRES 14 B 314 ASP GLY LYS TYR LYS GLN ASP THR TRP CYS LEU GLY SER SEQRES 15 B 314 GLN TYR TRP ALA ARG THR PRO HIS VAL GLN ASN TYR ASN SEQRES 16 B 314 ALA ARG TYR GLY ILE LEU LEU ASP MSE VAL GLY GLY LYS SEQRES 17 B 314 ASP ALA THR PHE TYR TYR GLU GLY TYR SER ALA ARG THR SEQRES 18 B 314 ALA ARG SER GLU MSE LYS LYS ILE TRP LYS LYS ALA HIS SEQRES 19 B 314 GLU LEU GLY TYR GLY LYS TYR PHE VAL LYS GLU ASP GLY SEQRES 20 B 314 GLY GLU THR VAL ASP ASP HIS ILE TYR VAL ASN LYS LEU SEQRES 21 B 314 ALA ARG ILE PRO CYS VAL ASP ILE ILE ASN TYR ASP ALA SEQRES 22 B 314 GLY ASN PRO GLN SER SER PHE GLY SER PHE TRP HIS THR SEQRES 23 B 314 VAL ASN ASP THR MSE GLU ASN ILE ASP ARG ASN THR LEU SEQRES 24 B 314 LYS ALA VAL GLY GLN THR VAL MSE ASP VAL ILE TYR ASN SEQRES 25 B 314 GLU LYS MODRES 3GUX MSE A 224 MET SELENOMETHIONINE MODRES 3GUX MSE A 246 MET SELENOMETHIONINE MODRES 3GUX MSE A 327 MET SELENOMETHIONINE MODRES 3GUX MSE B 224 MET SELENOMETHIONINE MODRES 3GUX MSE B 246 MET SELENOMETHIONINE MODRES 3GUX MSE B 327 MET SELENOMETHIONINE HET MSE A 224 8 HET MSE A 246 8 HET MSE A 327 8 HET MSE B 224 8 HET MSE B 246 8 HET MSE B 327 8 HET ACT A 335 4 HET EDO A 336 4 HET ACT B 335 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *282(H2 O) HELIX 1 1 ASP A 45 ASP A 58 1 14 HELIX 2 2 THR A 66 PHE A 83 1 18 HELIX 3 3 GLY A 150 GLU A 167 1 18 HELIX 4 4 CYS A 199 THR A 208 1 10 HELIX 5 5 TYR A 237 ALA A 242 1 6 HELIX 6 6 ALA A 242 GLY A 257 1 16 HELIX 7 7 ASP A 272 ALA A 281 1 10 HELIX 8 8 ASP A 315 ASN A 332 1 18 HELIX 9 9 ASP B 45 PHE B 59 1 15 HELIX 10 10 THR B 66 PHE B 83 1 18 HELIX 11 11 GLY B 150 GLU B 167 1 18 HELIX 12 12 CYS B 199 THR B 208 1 10 HELIX 13 13 GLU B 235 ALA B 242 1 8 HELIX 14 14 ALA B 242 GLY B 257 1 16 HELIX 15 15 ASP B 272 ARG B 282 1 11 HELIX 16 16 ASP B 315 ASN B 332 1 18 SHEET 1 A 6 LYS A 86 ILE A 95 0 SHEET 2 A 6 ILE A 101 TYR A 111 -1 O ASN A 106 N GLN A 90 SHEET 3 A 6 GLY A 172 PHE A 178 -1 O ILE A 175 N GLY A 109 SHEET 4 A 6 ARG A 118 HIS A 124 1 N LEU A 121 O ASP A 174 SHEET 5 A 6 TYR A 218 ASP A 223 1 O LEU A 222 N CYS A 122 SHEET 6 A 6 CYS A 285 ILE A 289 1 O VAL A 286 N LEU A 221 SHEET 1 B 2 PHE A 232 TYR A 234 0 SHEET 2 B 2 PHE A 262 ASP A 266 1 O GLU A 265 N TYR A 234 SHEET 1 C 6 LYS B 86 ILE B 95 0 SHEET 2 C 6 ILE B 101 TYR B 111 -1 O ILE B 108 N TYR B 88 SHEET 3 C 6 GLY B 172 PHE B 178 -1 O PHE B 177 N ILE B 107 SHEET 4 C 6 ARG B 118 HIS B 124 1 N LEU B 121 O ASP B 174 SHEET 5 C 6 GLY B 219 ASP B 223 1 O ILE B 220 N CYS B 122 SHEET 6 C 6 CYS B 285 ILE B 289 1 O ILE B 288 N LEU B 221 SHEET 1 D 2 PHE B 232 TYR B 234 0 SHEET 2 D 2 PHE B 262 ASP B 266 1 O GLU B 265 N TYR B 234 LINK C ASP A 223 N MSE A 224 1555 1555 1.34 LINK C MSE A 224 N VAL A 225 1555 1555 1.34 LINK C GLU A 245 N MSE A 246 1555 1555 1.32 LINK C MSE A 246 N LYS A 247 1555 1555 1.34 LINK C VAL A 326 N MSE A 327 1555 1555 1.32 LINK C MSE A 327 N ASP A 328 1555 1555 1.33 LINK C ASP B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N VAL B 225 1555 1555 1.33 LINK C GLU B 245 N MSE B 246 1555 1555 1.32 LINK C MSE B 246 N LYS B 247 1555 1555 1.32 LINK C VAL B 326 N MSE B 327 1555 1555 1.32 LINK C MSE B 327 N ASP B 328 1555 1555 1.33 SITE 1 AC1 7 ASN A 65 THR A 66 HIS A 69 LYS A 70 SITE 2 AC1 7 LYS A 103 HOH A 340 HOH A 482 SITE 1 AC2 5 ASP A 47 HIS A 254 ASN A 317 LYS A 320 SITE 2 AC2 5 HOH A 456 SITE 1 AC3 7 ASN B 65 THR B 66 HIS B 69 LYS B 70 SITE 2 AC3 7 HOH B 368 HOH B 440 HOH B 475 CRYST1 42.620 49.060 281.360 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003554 0.00000