HEADER ISOMERASE 31-MAR-09 3GVG TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TPIA, TPI, RV1438, MT1482, MTCY493.16C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS TRIOSEPHOSPHATE ISOMERASE, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 GLUCONEOGENESIS, GLYCOLYSIS, ISOMERASE, PENTOSE SHUNT, STRUCTURAL KEYWDS 3 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 4 SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3GVG 1 REMARK SEQADV REVDAT 3 22-APR-15 3GVG 1 JRNL REVDAT 2 13-JUL-11 3GVG 1 VERSN REVDAT 1 14-APR-09 3GVG 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 78636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3934 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5370 ; 1.700 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6229 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.095 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;11.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4508 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2560 ; 1.053 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1068 ; 0.328 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4087 ; 1.768 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 2.705 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1271 ; 4.348 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 74.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YYA, MODIFIED WITH THE CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ A3: 200MM (NH4)2H CITRATE, 20% REMARK 280 PEG 3350, MYTUD.00317.A AT 30MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.56000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.56000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLN A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 LEU A 260 REMARK 465 PRO A 261 REMARK 465 MET B -21 REMARK 465 ALA B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 THR B -11 REMARK 465 LEU B -10 REMARK 465 GLU B -9 REMARK 465 ALA B -8 REMARK 465 GLN B -7 REMARK 465 THR B -6 REMARK 465 GLN B -5 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 465 LEU B 260 REMARK 465 PRO B 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 389 O HOH B 633 2.03 REMARK 500 O HOH B 308 O HOH B 572 2.03 REMARK 500 CG2 THR A 55 O HOH A 384 2.08 REMARK 500 O HOH A 333 O HOH A 581 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 242 CB SER A 242 OG -0.083 REMARK 500 GLU B 150 CD GLU B 150 OE2 0.072 REMARK 500 SER B 242 CB SER B 242 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 64 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 110 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 110 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -152.72 58.56 REMARK 500 LEU A 15 122.45 88.07 REMARK 500 ALA A 203 -100.01 -129.94 REMARK 500 LYS B 12 -148.90 53.13 REMARK 500 LEU B 15 119.44 90.75 REMARK 500 ALA B 203 -96.23 -122.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTUD.00317.A RELATED DB: TARGETDB DBREF 3GVG A 2 261 UNP P66940 TPIS_MYCTU 2 261 DBREF 3GVG B 2 261 UNP P66940 TPIS_MYCTU 2 261 SEQADV 3GVG MET A -21 UNP P66940 EXPRESSION TAG SEQADV 3GVG ALA A -20 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -19 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -18 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -17 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -16 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -15 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS A -14 UNP P66940 EXPRESSION TAG SEQADV 3GVG MET A -13 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY A -12 UNP P66940 EXPRESSION TAG SEQADV 3GVG THR A -11 UNP P66940 EXPRESSION TAG SEQADV 3GVG LEU A -10 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLU A -9 UNP P66940 EXPRESSION TAG SEQADV 3GVG ALA A -8 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLN A -7 UNP P66940 EXPRESSION TAG SEQADV 3GVG THR A -6 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLN A -5 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY A -4 UNP P66940 EXPRESSION TAG SEQADV 3GVG PRO A -3 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY A -2 UNP P66940 EXPRESSION TAG SEQADV 3GVG SER A -1 UNP P66940 EXPRESSION TAG SEQADV 3GVG MET A 0 UNP P66940 EXPRESSION TAG SEQADV 3GVG VAL A 1 UNP P66940 EXPRESSION TAG SEQADV 3GVG MET B -21 UNP P66940 EXPRESSION TAG SEQADV 3GVG ALA B -20 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -19 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -18 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -17 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -16 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -15 UNP P66940 EXPRESSION TAG SEQADV 3GVG HIS B -14 UNP P66940 EXPRESSION TAG SEQADV 3GVG MET B -13 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY B -12 UNP P66940 EXPRESSION TAG SEQADV 3GVG THR B -11 UNP P66940 EXPRESSION TAG SEQADV 3GVG LEU B -10 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLU B -9 UNP P66940 EXPRESSION TAG SEQADV 3GVG ALA B -8 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLN B -7 UNP P66940 EXPRESSION TAG SEQADV 3GVG THR B -6 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLN B -5 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY B -4 UNP P66940 EXPRESSION TAG SEQADV 3GVG PRO B -3 UNP P66940 EXPRESSION TAG SEQADV 3GVG GLY B -2 UNP P66940 EXPRESSION TAG SEQADV 3GVG SER B -1 UNP P66940 EXPRESSION TAG SEQADV 3GVG MET B 0 UNP P66940 EXPRESSION TAG SEQADV 3GVG VAL B 1 UNP P66940 EXPRESSION TAG SEQRES 1 A 283 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 283 ALA GLN THR GLN GLY PRO GLY SER MET VAL SER ARG LYS SEQRES 3 A 283 PRO LEU ILE ALA GLY ASN TRP LYS MET ASN LEU ASN HIS SEQRES 4 A 283 TYR GLU ALA ILE ALA LEU VAL GLN LYS ILE ALA PHE SER SEQRES 5 A 283 LEU PRO ASP LYS TYR TYR ASP ARG VAL ASP VAL ALA VAL SEQRES 6 A 283 ILE PRO PRO PHE THR ASP LEU ARG SER VAL GLN THR LEU SEQRES 7 A 283 VAL ASP GLY ASP LYS LEU ARG LEU THR TYR GLY ALA GLN SEQRES 8 A 283 ASP LEU SER PRO HIS ASP SER GLY ALA TYR THR GLY ASP SEQRES 9 A 283 VAL SER GLY ALA PHE LEU ALA LYS LEU GLY CYS SER TYR SEQRES 10 A 283 VAL VAL VAL GLY HIS SER GLU ARG ARG THR TYR HIS ASN SEQRES 11 A 283 GLU ASP ASP ALA LEU VAL ALA ALA LYS ALA ALA THR ALA SEQRES 12 A 283 LEU LYS HIS GLY LEU THR PRO ILE VAL CYS ILE GLY GLU SEQRES 13 A 283 HIS LEU ASP VAL ARG GLU ALA GLY ASN HIS VAL ALA HIS SEQRES 14 A 283 ASN ILE GLU GLN LEU ARG GLY SER LEU ALA GLY LEU LEU SEQRES 15 A 283 ALA GLU GLN ILE GLY SER VAL VAL ILE ALA TYR GLU PRO SEQRES 16 A 283 VAL TRP ALA ILE GLY THR GLY ARG VAL ALA SER ALA ALA SEQRES 17 A 283 ASP ALA GLN GLU VAL CYS ALA ALA ILE ARG LYS GLU LEU SEQRES 18 A 283 ALA SER LEU ALA SER PRO ARG ILE ALA ASP THR VAL ARG SEQRES 19 A 283 VAL LEU TYR GLY GLY SER VAL ASN ALA LYS ASN VAL GLY SEQRES 20 A 283 ASP ILE VAL ALA GLN ASP ASP VAL ASP GLY GLY LEU VAL SEQRES 21 A 283 GLY GLY ALA SER LEU ASP GLY GLU HIS PHE ALA THR LEU SEQRES 22 A 283 ALA ALA ILE ALA ALA GLY GLY PRO LEU PRO SEQRES 1 B 283 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 283 ALA GLN THR GLN GLY PRO GLY SER MET VAL SER ARG LYS SEQRES 3 B 283 PRO LEU ILE ALA GLY ASN TRP LYS MET ASN LEU ASN HIS SEQRES 4 B 283 TYR GLU ALA ILE ALA LEU VAL GLN LYS ILE ALA PHE SER SEQRES 5 B 283 LEU PRO ASP LYS TYR TYR ASP ARG VAL ASP VAL ALA VAL SEQRES 6 B 283 ILE PRO PRO PHE THR ASP LEU ARG SER VAL GLN THR LEU SEQRES 7 B 283 VAL ASP GLY ASP LYS LEU ARG LEU THR TYR GLY ALA GLN SEQRES 8 B 283 ASP LEU SER PRO HIS ASP SER GLY ALA TYR THR GLY ASP SEQRES 9 B 283 VAL SER GLY ALA PHE LEU ALA LYS LEU GLY CYS SER TYR SEQRES 10 B 283 VAL VAL VAL GLY HIS SER GLU ARG ARG THR TYR HIS ASN SEQRES 11 B 283 GLU ASP ASP ALA LEU VAL ALA ALA LYS ALA ALA THR ALA SEQRES 12 B 283 LEU LYS HIS GLY LEU THR PRO ILE VAL CYS ILE GLY GLU SEQRES 13 B 283 HIS LEU ASP VAL ARG GLU ALA GLY ASN HIS VAL ALA HIS SEQRES 14 B 283 ASN ILE GLU GLN LEU ARG GLY SER LEU ALA GLY LEU LEU SEQRES 15 B 283 ALA GLU GLN ILE GLY SER VAL VAL ILE ALA TYR GLU PRO SEQRES 16 B 283 VAL TRP ALA ILE GLY THR GLY ARG VAL ALA SER ALA ALA SEQRES 17 B 283 ASP ALA GLN GLU VAL CYS ALA ALA ILE ARG LYS GLU LEU SEQRES 18 B 283 ALA SER LEU ALA SER PRO ARG ILE ALA ASP THR VAL ARG SEQRES 19 B 283 VAL LEU TYR GLY GLY SER VAL ASN ALA LYS ASN VAL GLY SEQRES 20 B 283 ASP ILE VAL ALA GLN ASP ASP VAL ASP GLY GLY LEU VAL SEQRES 21 B 283 GLY GLY ALA SER LEU ASP GLY GLU HIS PHE ALA THR LEU SEQRES 22 B 283 ALA ALA ILE ALA ALA GLY GLY PRO LEU PRO HET GOL A 300 6 HET GOL B 300 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *650(H2 O) HELIX 1 1 ASN A 16 LEU A 31 1 16 HELIX 2 2 PRO A 32 ARG A 38 5 7 HELIX 3 3 PRO A 46 THR A 48 5 3 HELIX 4 4 ASP A 49 ASP A 60 1 12 HELIX 5 5 SER A 84 LEU A 91 1 8 HELIX 6 6 HIS A 100 HIS A 107 1 8 HELIX 7 7 ASP A 110 HIS A 124 1 15 HELIX 8 8 HIS A 135 ALA A 141 1 7 HELIX 9 9 ASN A 143 LEU A 156 1 14 HELIX 10 10 LEU A 160 GLY A 165 1 6 HELIX 11 11 PRO A 173 ILE A 177 5 5 HELIX 12 12 SER A 184 ALA A 203 1 20 HELIX 13 13 SER A 204 ASP A 209 1 6 HELIX 14 14 ASN A 223 ALA A 229 1 7 HELIX 15 15 GLY A 239 LEU A 243 5 5 HELIX 16 16 ASP A 244 GLY A 257 1 14 HELIX 17 17 ASN B 16 LEU B 31 1 16 HELIX 18 18 PRO B 32 ARG B 38 5 7 HELIX 19 19 PRO B 46 THR B 48 5 3 HELIX 20 20 ASP B 49 ASP B 60 1 12 HELIX 21 21 SER B 84 LEU B 91 1 8 HELIX 22 22 HIS B 100 HIS B 107 1 8 HELIX 23 23 ASP B 110 HIS B 124 1 15 HELIX 24 24 HIS B 135 GLY B 142 1 8 HELIX 25 25 ASN B 143 LEU B 156 1 14 HELIX 26 26 LEU B 160 GLY B 165 1 6 HELIX 27 27 PRO B 173 ILE B 177 5 5 HELIX 28 28 SER B 184 ALA B 203 1 20 HELIX 29 29 SER B 204 ASP B 209 1 6 HELIX 30 30 ASN B 223 ALA B 229 1 7 HELIX 31 31 GLY B 239 LEU B 243 5 5 HELIX 32 32 ASP B 244 GLY B 257 1 14 SHEET 1 A 9 LEU A 6 ASN A 10 0 SHEET 2 A 9 ASP A 40 ILE A 44 1 O ASP A 40 N ILE A 7 SHEET 3 A 9 THR A 65 ALA A 68 1 O THR A 65 N VAL A 41 SHEET 4 A 9 TYR A 95 VAL A 98 1 O VAL A 97 N ALA A 68 SHEET 5 A 9 THR A 127 ILE A 132 1 O ILE A 129 N VAL A 96 SHEET 6 A 9 VAL A 168 TYR A 171 1 O VAL A 168 N VAL A 130 SHEET 7 A 9 VAL A 213 TYR A 215 1 O LEU A 214 N ILE A 169 SHEET 8 A 9 GLY A 235 VAL A 238 1 O GLY A 235 N TYR A 215 SHEET 9 A 9 LEU A 6 ASN A 10 1 N ALA A 8 O VAL A 238 SHEET 1 B 9 LEU B 6 ASN B 10 0 SHEET 2 B 9 ASP B 40 ILE B 44 1 O ALA B 42 N GLY B 9 SHEET 3 B 9 THR B 65 ALA B 68 1 O THR B 65 N VAL B 41 SHEET 4 B 9 TYR B 95 VAL B 98 1 O VAL B 97 N ALA B 68 SHEET 5 B 9 THR B 127 ILE B 132 1 O ILE B 129 N VAL B 98 SHEET 6 B 9 VAL B 168 TYR B 171 1 O VAL B 168 N VAL B 130 SHEET 7 B 9 VAL B 213 TYR B 215 1 O LEU B 214 N ILE B 169 SHEET 8 B 9 GLY B 235 VAL B 238 1 O GLY B 235 N TYR B 215 SHEET 9 B 9 LEU B 6 ASN B 10 1 N ALA B 8 O GLY B 236 SITE 1 AC1 8 ASN A 10 LYS A 12 HIS A 100 GLU A 172 SITE 2 AC1 8 GLY A 239 HOH A 389 HOH A 456 HOH A 581 SITE 1 AC2 9 ASN B 10 LYS B 12 HIS B 100 GLU B 172 SITE 2 AC2 9 ILE B 177 GLY B 216 GLY B 239 GOL B 301 SITE 3 AC2 9 HOH B 401 SITE 1 AC3 7 LYS B 12 GLY B 239 GLY B 240 HOH B 281 SITE 2 AC3 7 GOL B 300 HOH B 375 HOH B 407 CRYST1 133.120 55.760 76.420 90.00 104.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007512 0.000000 0.001875 0.00000 SCALE2 0.000000 0.017934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013487 0.00000