data_3GVN # _entry.id 3GVN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GVN pdb_00003gvn 10.2210/pdb3gvn/pdb NDB AR0105 ? ? RCSB RCSB052363 ? ? WWPDB D_1000052363 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2V6W 'tRNASer isoacceptor' unspecified PDB 1SER 'tRNASer isoacceptor complexed with corresponding Aminoacyl-tRNA-Synthetase' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GVN _pdbx_database_status.recvd_initial_deposition_date 2009-03-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eichert, A.' 1 'Furste, J.P.' 2 'Schreiber, A.' 3 'Perbandt, M.' 4 'Betzel, C.' 5 'Erdmann, V.A.' 6 'Forster, C.' 7 # _citation.id primary _citation.title 'The 1.2A crystal structure of an E. coli tRNASer)acceptor stem microhelix reveals two magnesium binding sites.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 386 _citation.page_first 368 _citation.page_last 373 _citation.year 2009 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19527687 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2009.06.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eichert, A.' 1 ? primary 'Furste, J.P.' 2 ? primary 'Schreiber, A.' 3 ? primary 'Perbandt, M.' 4 ? primary 'Betzel, C.' 5 ? primary 'Erdmann, V.A.' 6 ? primary 'Forster, C.' 7 ? # _cell.entry_id 3GVN _cell.length_a 35.793 _cell.length_b 39.126 _cell.length_c 31.367 _cell.angle_alpha 90.00 _cell.angle_beta 111.08 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GVN _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*UP*GP*AP*GP*G)-3'" 2316.443 1 ? ? ? ? 2 polymer syn "5'-R(*CP*CP*UP*CP*AP*CP*C)-3'" 2116.323 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'tRNASer acceptor stem microhelix (RS-1661)' 2 'tRNASer acceptor stem microhelix (RS-1661)' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUGAGG GGUGAGG A ? 2 polyribonucleotide no no CCUCACC CCUCACC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 A n 1 6 G n 1 7 G n 2 1 C n 2 2 C n 2 3 U n 2 4 C n 2 5 A n 2 6 C n 2 7 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in E.coli.' 2 1 sample ? ? ? ? ? 'This sequence occurs naturally in E.coli.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3GVN 3GVN 1 ? ? ? 2 PDB 3GVN 3GVN 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GVN A 1 ? 7 ? 3GVN 1 ? 7 ? 1 7 2 2 3GVN B 1 ? 7 ? 3GVN 66 ? 72 ? 66 72 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3GVN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;10% (v/v) MPD, 40mM sodium cacodylate, 20mM cobalt hexamine, 80mM sodium chloride, 20mM magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3GVN _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 120 _reflns.d_resolution_high 1.2 _reflns.number_obs 12806 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.22 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.154 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 8.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 8814 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GVN _refine.ls_number_reflns_obs 12806 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 120 _refine.ls_d_res_high 1.2 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.190 _refine.ls_R_factor_R_free 0.201 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 4550 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2v6w _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 293 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 392 _refine_hist.d_res_high 1.2 _refine_hist.d_res_low 120 # _struct.entry_id 3GVN _struct.title 'The 1.2 Angstroem crystal structure of an E.coli tRNASer acceptor stem microhelix reveals two magnesium binding sites' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GVN _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tRNASer/Seryl-tRNA-synthetase, tRNA acceptor stem microhelix, identity elements, RNA hydration, magnesium binding sites, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 8 A HOH 12 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 8 A HOH 14 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 8 A HOH 77 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 8 A HOH 94 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 8 A HOH 96 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 9 A HOH 15 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 9 A HOH 16 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 9 A HOH 21 1_555 ? ? ? ? ? ? ? 2.101 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 3 B A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 3 B A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 5 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 5 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 8 ? 5 'BINDING SITE FOR RESIDUE MG A 8' AC2 Software A MG 9 ? 7 'BINDING SITE FOR RESIDUE MG A 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH E . ? HOH A 12 . ? 1_555 ? 2 AC1 5 HOH E . ? HOH A 14 . ? 1_555 ? 3 AC1 5 HOH E . ? HOH A 77 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 94 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 96 . ? 1_555 ? 6 AC2 7 HOH E . ? HOH A 15 . ? 1_555 ? 7 AC2 7 HOH E . ? HOH A 16 . ? 1_555 ? 8 AC2 7 HOH E . ? HOH A 21 . ? 1_555 ? 9 AC2 7 HOH E . ? HOH A 40 . ? 4_545 ? 10 AC2 7 HOH F . ? HOH B 2 . ? 2_655 ? 11 AC2 7 HOH F . ? HOH B 46 . ? 2_655 ? 12 AC2 7 A B 5 ? A B 70 . ? 2_655 ? # _database_PDB_matrix.entry_id 3GVN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GVN _atom_sites.fract_transf_matrix[1][1] 0.027938 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010769 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034167 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GR A . n A 1 2 G 2 2 2 G GR A . n A 1 3 U 3 3 3 U UR A . n A 1 4 G 4 4 4 G GR A . n A 1 5 A 5 5 5 A AR A . n A 1 6 G 6 6 6 G GR A . n A 1 7 G 7 7 7 G GR A . n B 2 1 C 1 66 66 C CR B . n B 2 2 C 2 67 67 C CR B . n B 2 3 U 3 68 68 U UR B . n B 2 4 C 4 69 69 C CR B . n B 2 5 A 5 70 70 A AR B . n B 2 6 C 6 71 71 C CR B . n B 2 7 C 7 72 72 C CR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 8 1 MG MG A . D 3 MG 1 9 1 MG MG A . E 4 HOH 1 10 10 HOH HOH A . E 4 HOH 2 11 11 HOH HOH A . E 4 HOH 3 12 12 HOH HOH A . E 4 HOH 4 13 13 HOH HOH A . E 4 HOH 5 14 14 HOH HOH A . E 4 HOH 6 15 15 HOH HOH A . E 4 HOH 7 16 1 HOH HOH A . E 4 HOH 8 17 17 HOH HOH A . E 4 HOH 9 18 18 HOH HOH A . E 4 HOH 10 19 19 HOH HOH A . E 4 HOH 11 20 3 HOH HOH A . E 4 HOH 12 21 6 HOH HOH A . E 4 HOH 13 22 7 HOH HOH A . E 4 HOH 14 23 9 HOH HOH A . E 4 HOH 15 24 24 HOH HOH A . E 4 HOH 16 25 25 HOH HOH A . E 4 HOH 17 26 26 HOH HOH A . E 4 HOH 18 27 27 HOH HOH A . E 4 HOH 19 30 30 HOH HOH A . E 4 HOH 20 34 34 HOH HOH A . E 4 HOH 21 36 36 HOH HOH A . E 4 HOH 22 37 37 HOH HOH A . E 4 HOH 23 38 38 HOH HOH A . E 4 HOH 24 39 39 HOH HOH A . E 4 HOH 25 40 40 HOH HOH A . E 4 HOH 26 41 41 HOH HOH A . E 4 HOH 27 42 42 HOH HOH A . E 4 HOH 28 45 45 HOH HOH A . E 4 HOH 29 47 47 HOH HOH A . E 4 HOH 30 50 50 HOH HOH A . E 4 HOH 31 51 51 HOH HOH A . E 4 HOH 32 57 57 HOH HOH A . E 4 HOH 33 60 60 HOH HOH A . E 4 HOH 34 66 66 HOH HOH A . E 4 HOH 35 68 68 HOH HOH A . E 4 HOH 36 71 71 HOH HOH A . E 4 HOH 37 73 73 HOH HOH A . E 4 HOH 38 74 74 HOH HOH A . E 4 HOH 39 77 77 HOH HOH A . E 4 HOH 40 81 81 HOH HOH A . E 4 HOH 41 82 82 HOH HOH A . E 4 HOH 42 83 83 HOH HOH A . E 4 HOH 43 84 84 HOH HOH A . E 4 HOH 44 85 85 HOH HOH A . E 4 HOH 45 87 87 HOH HOH A . E 4 HOH 46 88 88 HOH HOH A . E 4 HOH 47 90 90 HOH HOH A . E 4 HOH 48 93 93 HOH HOH A . E 4 HOH 49 94 94 HOH HOH A . E 4 HOH 50 96 96 HOH HOH A . F 4 HOH 1 2 2 HOH HOH B . F 4 HOH 2 4 4 HOH HOH B . F 4 HOH 3 5 5 HOH HOH B . F 4 HOH 4 8 8 HOH HOH B . F 4 HOH 5 16 16 HOH HOH B . F 4 HOH 6 20 20 HOH HOH B . F 4 HOH 7 21 21 HOH HOH B . F 4 HOH 8 22 22 HOH HOH B . F 4 HOH 9 23 23 HOH HOH B . F 4 HOH 10 28 28 HOH HOH B . F 4 HOH 11 29 29 HOH HOH B . F 4 HOH 12 31 31 HOH HOH B . F 4 HOH 13 32 32 HOH HOH B . F 4 HOH 14 33 33 HOH HOH B . F 4 HOH 15 35 35 HOH HOH B . F 4 HOH 16 43 43 HOH HOH B . F 4 HOH 17 44 44 HOH HOH B . F 4 HOH 18 46 46 HOH HOH B . F 4 HOH 19 48 48 HOH HOH B . F 4 HOH 20 49 49 HOH HOH B . F 4 HOH 21 52 52 HOH HOH B . F 4 HOH 22 53 53 HOH HOH B . F 4 HOH 23 54 54 HOH HOH B . F 4 HOH 24 55 55 HOH HOH B . F 4 HOH 25 56 56 HOH HOH B . F 4 HOH 26 58 58 HOH HOH B . F 4 HOH 27 59 59 HOH HOH B . F 4 HOH 28 61 61 HOH HOH B . F 4 HOH 29 62 62 HOH HOH B . F 4 HOH 30 63 63 HOH HOH B . F 4 HOH 31 64 64 HOH HOH B . F 4 HOH 32 65 65 HOH HOH B . F 4 HOH 33 73 67 HOH HOH B . F 4 HOH 34 74 69 HOH HOH B . F 4 HOH 35 75 75 HOH HOH B . F 4 HOH 36 76 76 HOH HOH B . F 4 HOH 37 77 70 HOH HOH B . F 4 HOH 38 78 78 HOH HOH B . F 4 HOH 39 79 79 HOH HOH B . F 4 HOH 40 80 80 HOH HOH B . F 4 HOH 41 81 72 HOH HOH B . F 4 HOH 42 86 86 HOH HOH B . F 4 HOH 43 89 89 HOH HOH B . F 4 HOH 44 91 91 HOH HOH B . F 4 HOH 45 92 92 HOH HOH B . F 4 HOH 46 95 95 HOH HOH B . F 4 HOH 47 97 97 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 700 ? 1 MORE -3 ? 1 'SSA (A^2)' 2770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 12 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 92.3 ? 2 O ? E HOH . ? A HOH 12 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 77 ? 1_555 174.5 ? 3 O ? E HOH . ? A HOH 14 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 77 ? 1_555 93.1 ? 4 O ? E HOH . ? A HOH 12 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 94 ? 1_555 90.9 ? 5 O ? E HOH . ? A HOH 14 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 94 ? 1_555 90.9 ? 6 O ? E HOH . ? A HOH 77 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 94 ? 1_555 89.1 ? 7 O ? E HOH . ? A HOH 12 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 82.8 ? 8 O ? E HOH . ? A HOH 14 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 174.9 ? 9 O ? E HOH . ? A HOH 77 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 91.8 ? 10 O ? E HOH . ? A HOH 94 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 90.6 ? 11 O ? E HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 9 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 93.4 ? 12 O ? E HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 9 ? 1_555 O ? E HOH . ? A HOH 21 ? 1_555 175.6 ? 13 O ? E HOH . ? A HOH 16 ? 1_555 MG ? D MG . ? A MG 9 ? 1_555 O ? E HOH . ? A HOH 21 ? 1_555 91.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A G 1 ? ? N3 A G 1 ? ? 1.432 1.323 0.109 0.008 N 2 1 C5 A G 1 ? ? N7 A G 1 ? ? 1.470 1.388 0.082 0.006 N 3 1 C8 A G 1 ? ? N9 A G 1 ? ? 1.329 1.374 -0.045 0.007 N 4 1 C2 A G 2 ? ? N3 A G 2 ? ? 1.458 1.323 0.135 0.008 N 5 1 C4 A G 2 ? ? C5 A G 2 ? ? 1.451 1.379 0.072 0.007 N 6 1 C5 A G 2 ? ? N7 A G 2 ? ? 1.521 1.388 0.133 0.006 N 7 1 N7 A G 2 ? ? C8 A G 2 ? ? 1.347 1.305 0.042 0.006 N 8 1 "O3'" A G 2 ? ? P A U 3 ? ? 1.512 1.607 -0.095 0.012 Y 9 1 C2 A G 4 ? ? N3 A G 4 ? ? 1.438 1.323 0.115 0.008 N 10 1 C4 A G 4 ? ? C5 A G 4 ? ? 1.459 1.379 0.080 0.007 N 11 1 C5 A G 4 ? ? N7 A G 4 ? ? 1.514 1.388 0.126 0.006 N 12 1 N7 A G 4 ? ? C8 A G 4 ? ? 1.350 1.305 0.045 0.006 N 13 1 C2 A G 6 ? ? N3 A G 6 ? ? 1.445 1.323 0.122 0.008 N 14 1 C4 A G 6 ? ? C5 A G 6 ? ? 1.445 1.379 0.066 0.007 N 15 1 C5 A G 6 ? ? C6 A G 6 ? ? 1.354 1.419 -0.065 0.010 N 16 1 C5 A G 6 ? ? N7 A G 6 ? ? 1.552 1.388 0.164 0.006 N 17 1 N7 A G 6 ? ? C8 A G 6 ? ? 1.351 1.305 0.046 0.006 N 18 1 C2 A G 6 ? ? N2 A G 6 ? ? 1.403 1.341 0.062 0.010 N 19 1 C2 A G 7 ? ? N3 A G 7 ? ? 1.481 1.323 0.158 0.008 N 20 1 N3 A G 7 ? ? C4 A G 7 ? ? 1.307 1.350 -0.043 0.007 N 21 1 C5 A G 7 ? ? N7 A G 7 ? ? 1.527 1.388 0.139 0.006 N 22 1 N7 A G 7 ? ? C8 A G 7 ? ? 1.409 1.305 0.104 0.006 N 23 1 N3 B C 66 ? ? C4 B C 66 ? ? 1.281 1.335 -0.054 0.007 N 24 1 C4 B C 66 ? ? C5 B C 66 ? ? 1.364 1.425 -0.061 0.008 N 25 1 C2 B C 67 ? ? N3 B C 67 ? ? 1.428 1.353 0.075 0.008 N 26 1 N3 B C 67 ? ? C4 B C 67 ? ? 1.272 1.335 -0.063 0.007 N 27 1 P B U 68 ? ? OP2 B U 68 ? ? 1.378 1.485 -0.107 0.017 N 28 1 C4 B C 69 ? ? N4 B C 69 ? ? 1.397 1.335 0.062 0.009 N 29 1 N1 B C 69 ? ? C6 B C 69 ? ? 1.321 1.367 -0.046 0.006 N 30 1 C2 B C 69 ? ? N3 B C 69 ? ? 1.411 1.353 0.058 0.008 N 31 1 N3 B C 69 ? ? C4 B C 69 ? ? 1.244 1.335 -0.091 0.007 N 32 1 C4 B C 69 ? ? C5 B C 69 ? ? 1.350 1.425 -0.075 0.008 N 33 1 N3 B C 71 ? ? C4 B C 71 ? ? 1.276 1.335 -0.059 0.007 N 34 1 C4 B C 71 ? ? C5 B C 71 ? ? 1.308 1.425 -0.117 0.008 N 35 1 N3 B C 72 ? ? C4 B C 72 ? ? 1.269 1.335 -0.066 0.007 N 36 1 C4 B C 72 ? ? C5 B C 72 ? ? 1.366 1.425 -0.059 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? C2 A G 1 ? ? 117.64 125.10 -7.46 0.60 N 2 1 N1 A G 1 ? ? C2 A G 1 ? ? N3 A G 1 ? ? 128.45 123.90 4.55 0.60 N 3 1 C2 A G 1 ? ? N3 A G 1 ? ? C4 A G 1 ? ? 108.21 111.90 -3.69 0.50 N 4 1 C4 A G 1 ? ? C5 A G 1 ? ? N7 A G 1 ? ? 106.93 110.80 -3.87 0.40 N 5 1 N1 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 109.60 116.20 -6.60 0.90 N 6 1 C5 A G 1 ? ? C6 A G 1 ? ? O6 A G 1 ? ? 124.59 128.60 -4.01 0.60 N 7 1 C6 A G 2 ? ? N1 A G 2 ? ? C2 A G 2 ? ? 119.89 125.10 -5.21 0.60 N 8 1 N1 A G 2 ? ? C2 A G 2 ? ? N3 A G 2 ? ? 128.86 123.90 4.96 0.60 N 9 1 C4 A G 2 ? ? C5 A G 2 ? ? C6 A G 2 ? ? 122.98 118.80 4.18 0.60 N 10 1 C4 A G 2 ? ? C5 A G 2 ? ? N7 A G 2 ? ? 106.48 110.80 -4.32 0.40 N 11 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 109.07 106.40 2.67 0.40 N 12 1 N1 A G 2 ? ? C2 A G 2 ? ? N2 A G 2 ? ? 108.99 116.20 -7.21 0.90 N 13 1 "O5'" A U 3 ? ? P A U 3 ? ? OP2 A U 3 ? ? 99.34 105.70 -6.36 0.90 N 14 1 C2 A G 4 ? ? N3 A G 4 ? ? C4 A G 4 ? ? 105.91 111.90 -5.99 0.50 N 15 1 N3 A G 4 ? ? C4 A G 4 ? ? C5 A G 4 ? ? 131.77 128.60 3.17 0.50 N 16 1 C4 A G 4 ? ? C5 A G 4 ? ? N7 A G 4 ? ? 107.82 110.80 -2.98 0.40 N 17 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 113.11 106.40 6.71 0.40 N 18 1 N1 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 125.47 119.90 5.57 0.60 N 19 1 C5 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 123.13 128.60 -5.47 0.60 N 20 1 C2 A G 6 ? ? N3 A G 6 ? ? C4 A G 6 ? ? 107.94 111.90 -3.96 0.50 N 21 1 C4 A G 6 ? ? C5 A G 6 ? ? N7 A G 6 ? ? 106.03 110.80 -4.77 0.40 N 22 1 C5 A G 6 ? ? N7 A G 6 ? ? C8 A G 6 ? ? 100.62 104.30 -3.68 0.50 N 23 1 N7 A G 6 ? ? C8 A G 6 ? ? N9 A G 6 ? ? 116.75 113.10 3.65 0.50 N 24 1 N9 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 107.96 105.40 2.56 0.40 N 25 1 N1 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 124.35 119.90 4.45 0.60 N 26 1 C5 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 121.95 128.60 -6.65 0.60 N 27 1 C6 A G 7 ? ? N1 A G 7 ? ? C2 A G 7 ? ? 118.01 125.10 -7.09 0.60 N 28 1 N1 A G 7 ? ? C2 A G 7 ? ? N3 A G 7 ? ? 127.81 123.90 3.91 0.60 N 29 1 C4 A G 7 ? ? C5 A G 7 ? ? C6 A G 7 ? ? 123.39 118.80 4.59 0.60 N 30 1 C8 A G 7 ? ? N9 A G 7 ? ? C4 A G 7 ? ? 109.20 106.40 2.80 0.40 N 31 1 N9 A G 7 ? ? C4 A G 7 ? ? C5 A G 7 ? ? 107.86 105.40 2.46 0.40 N 32 1 N1 B C 66 ? ? C2 B C 66 ? ? N3 B C 66 ? ? 113.18 119.20 -6.02 0.70 N 33 1 C2 B C 66 ? ? N3 B C 66 ? ? C4 B C 66 ? ? 125.05 119.90 5.15 0.50 N 34 1 C6 B C 67 ? ? N1 B C 67 ? ? C2 B C 67 ? ? 112.85 120.30 -7.45 0.40 N 35 1 C2 B C 67 ? ? N3 B C 67 ? ? C4 B C 67 ? ? 129.10 119.90 9.20 0.50 N 36 1 N3 B C 67 ? ? C4 B C 67 ? ? C5 B C 67 ? ? 109.89 121.90 -12.01 0.40 N 37 1 C4 B C 67 ? ? C5 B C 67 ? ? C6 B C 67 ? ? 124.39 117.40 6.99 0.50 N 38 1 C5 B C 67 ? ? C6 B C 67 ? ? N1 B C 67 ? ? 124.39 121.00 3.39 0.50 N 39 1 N3 B C 67 ? ? C4 B C 67 ? ? N4 B C 67 ? ? 123.58 118.00 5.58 0.70 N 40 1 C5 B C 67 ? ? C4 B C 67 ? ? N4 B C 67 ? ? 126.50 120.20 6.30 0.70 N 41 1 C6 B C 69 ? ? N1 B C 69 ? ? C2 B C 69 ? ? 115.92 120.30 -4.38 0.40 N 42 1 C2 B C 69 ? ? N3 B C 69 ? ? C4 B C 69 ? ? 122.93 119.90 3.03 0.50 N 43 1 N3 B C 69 ? ? C4 B C 69 ? ? C5 B C 69 ? ? 113.47 121.90 -8.43 0.40 N 44 1 C4 B C 69 ? ? C5 B C 69 ? ? C6 B C 69 ? ? 129.88 117.40 12.48 0.50 N 45 1 C5 B C 69 ? ? C6 B C 69 ? ? N1 B C 69 ? ? 117.29 121.00 -3.71 0.50 N 46 1 C5 B C 69 ? ? C4 B C 69 ? ? N4 B C 69 ? ? 130.86 120.20 10.66 0.70 N 47 1 C5 B A 70 ? ? N7 B A 70 ? ? C8 B A 70 ? ? 106.96 103.90 3.06 0.50 N 48 1 N7 B A 70 ? ? C8 B A 70 ? ? N9 B A 70 ? ? 110.04 113.80 -3.76 0.50 N 49 1 C6 B C 71 ? ? N1 B C 71 ? ? C2 B C 71 ? ? 115.46 120.30 -4.84 0.40 N 50 1 C2 B C 71 ? ? N3 B C 71 ? ? C4 B C 71 ? ? 124.47 119.90 4.57 0.50 N 51 1 N3 B C 71 ? ? C4 B C 71 ? ? C5 B C 71 ? ? 118.44 121.90 -3.46 0.40 N 52 1 C4 B C 71 ? ? C5 B C 71 ? ? C6 B C 71 ? ? 121.05 117.40 3.65 0.50 N 53 1 N3 B C 72 ? ? C4 B C 72 ? ? C5 B C 72 ? ? 119.42 121.90 -2.48 0.40 N 54 1 C4 B C 72 ? ? C5 B C 72 ? ? C6 B C 72 ? ? 121.89 117.40 4.49 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # _ndb_struct_conf_na.entry_id 3GVN _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 7 1_555 -0.308 -0.138 -0.114 -5.780 -6.759 -1.294 1 A_G1:C72_B A 1 ? B 72 ? 19 1 1 A G 2 1_555 B C 6 1_555 -0.378 -0.151 -0.106 -8.684 -14.431 1.189 2 A_G2:C71_B A 2 ? B 71 ? 19 1 1 A U 3 1_555 B A 5 1_555 -0.101 -0.073 -0.004 -1.905 -2.938 -0.101 3 A_U3:A70_B A 3 ? B 70 ? 20 1 1 A G 4 1_555 B C 4 1_555 -0.277 -0.114 -0.011 -0.227 -8.074 -0.851 4 A_G4:C69_B A 4 ? B 69 ? 19 1 1 A A 5 1_555 B U 3 1_555 -0.074 -0.170 -0.056 -0.416 -9.750 -1.077 5 A_A5:U68_B A 5 ? B 68 ? 20 1 1 A G 6 1_555 B C 2 1_555 -0.329 -0.265 0.082 -6.167 -16.178 -1.482 6 A_G6:C67_B A 6 ? B 67 ? 19 1 1 A G 7 1_555 B C 1 1_555 -0.210 -0.111 0.009 -9.052 -15.119 -0.273 7 A_G7:C66_B A 7 ? B 66 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 7 1_555 A G 2 1_555 B C 6 1_555 -0.300 -2.040 3.380 -0.706 4.673 30.820 -4.677 0.425 3.051 8.729 1.318 31.172 1 AA_G1G2:C71C72_BB A 1 ? B 72 ? A 2 ? B 71 ? 1 A G 2 1_555 B C 6 1_555 A U 3 1_555 B A 5 1_555 -0.485 -1.272 3.100 -2.976 8.942 31.779 -3.593 0.398 2.686 15.897 5.291 33.112 2 AA_G2U3:A70C71_BB A 2 ? B 71 ? A 3 ? B 70 ? 1 A U 3 1_555 B A 5 1_555 A G 4 1_555 B C 4 1_555 1.271 -2.036 3.253 0.836 7.900 24.397 -6.611 -2.650 2.520 18.090 -1.915 25.639 3 AA_U3G4:C69A70_BB A 3 ? B 70 ? A 4 ? B 69 ? 1 A G 4 1_555 B C 4 1_555 A A 5 1_555 B U 3 1_555 -0.976 -1.844 3.192 -1.761 6.139 34.864 -3.875 1.361 2.880 10.141 2.908 35.426 4 AA_G4A5:U68C69_BB A 4 ? B 69 ? A 5 ? B 68 ? 1 A A 5 1_555 B U 3 1_555 A G 6 1_555 B C 2 1_555 -0.101 -1.322 3.411 -0.922 4.536 30.592 -3.369 0.008 3.188 8.535 1.735 30.932 5 AA_A5G6:C67U68_BB A 5 ? B 68 ? A 6 ? B 67 ? 1 A G 6 1_555 B C 2 1_555 A G 7 1_555 B C 1 1_555 0.823 -1.583 3.233 4.561 7.477 36.517 -3.398 -0.708 2.941 11.725 -7.153 37.517 6 AA_G6G7:C66C67_BB A 6 ? B 67 ? A 7 ? B 66 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2V6W _pdbx_initial_refinement_model.details ? #