HEADER RNA BINDING PROTEIN 31-MAR-09 3GVO TITLE STRUCTURE AND RNA BINDING OF THE MOUSE PUMILIO-2 PUF DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PUF DOMAIN, UNP RESIDUES 706-1056; COMPND 5 SYNONYM: PUMILIO 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PUM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS RNA-BINDING, PUMILIO, PUF DOMAIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.T.JENKINS,T.A.EDWARDS REVDAT 5 01-NOV-23 3GVO 1 REMARK SEQADV REVDAT 4 01-NOV-17 3GVO 1 REMARK REVDAT 3 13-JUL-11 3GVO 1 VERSN REVDAT 2 01-SEP-09 3GVO 1 JRNL REVDAT 1 30-JUN-09 3GVO 0 JRNL AUTH H.T.JENKINS,R.BAKER-WILDING,T.A.EDWARDS JRNL TITL STRUCTURE AND RNA BINDING OF THE MOUSE PUMILIO-2 PUF DOMAIN JRNL REF J.STRUCT.BIOL. V. 167 271 2009 JRNL REFN ISSN 1047-8477 JRNL PMID 19540345 JRNL DOI 10.1016/J.JSB.2009.06.007 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 56219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.174 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2993 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4054 ; 1.347 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 4.700 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.652 ;24.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;12.630 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2260 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1588 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2087 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 354 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 55 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2884 ; 1.371 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1289 ; 2.432 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1153 ; 3.883 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 706 A 730 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6593 -53.0307 32.5909 REMARK 3 T TENSOR REMARK 3 T11: -0.0038 T22: -0.0684 REMARK 3 T33: -0.0542 T12: 0.0669 REMARK 3 T13: 0.0007 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.2164 L22: 1.3094 REMARK 3 L33: 6.0440 L12: -0.2917 REMARK 3 L13: 0.1807 L23: 1.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: 0.0946 S13: -0.0420 REMARK 3 S21: 0.1017 S22: 0.0333 S23: -0.0148 REMARK 3 S31: 0.4050 S32: 0.1278 S33: -0.0860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 731 A 828 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6617 -39.7228 44.8163 REMARK 3 T TENSOR REMARK 3 T11: -0.0536 T22: -0.0307 REMARK 3 T33: -0.0180 T12: 0.0050 REMARK 3 T13: 0.0179 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6105 L22: 1.2270 REMARK 3 L33: 1.7898 L12: -0.5498 REMARK 3 L13: -0.7114 L23: 0.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.0136 S13: -0.0397 REMARK 3 S21: 0.0494 S22: 0.0374 S23: 0.0256 REMARK 3 S31: 0.1335 S32: -0.0047 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 831 A 968 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3375 -9.0909 42.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: -0.0814 REMARK 3 T33: -0.0296 T12: 0.0034 REMARK 3 T13: 0.0043 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.5174 L22: 1.5708 REMARK 3 L33: 0.5564 L12: -0.3962 REMARK 3 L13: 0.0560 L23: -0.3884 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0214 S13: 0.0558 REMARK 3 S21: -0.0633 S22: -0.0396 S23: -0.0131 REMARK 3 S31: -0.1441 S32: 0.0119 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 969 A 1015 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5321 5.4276 20.7697 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.1359 REMARK 3 T33: -0.1286 T12: 0.1268 REMARK 3 T13: -0.0377 T23: 0.1020 REMARK 3 L TENSOR REMARK 3 L11: 4.3611 L22: 3.0528 REMARK 3 L33: 6.4598 L12: -0.4101 REMARK 3 L13: -0.6468 L23: 0.6979 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: 1.0143 S13: 0.4270 REMARK 3 S21: -0.8447 S22: -0.2221 S23: 0.0266 REMARK 3 S31: -0.5847 S32: -0.6681 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1016 A 1049 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6785 2.5701 9.2476 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.1866 REMARK 3 T33: -0.0497 T12: 0.0216 REMARK 3 T13: -0.0081 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.6495 L22: 0.8062 REMARK 3 L33: 22.1440 L12: -1.6739 REMARK 3 L13: 0.1488 L23: -2.1767 REMARK 3 S TENSOR REMARK 3 S11: 0.3005 S12: 0.8380 S13: 0.0101 REMARK 3 S21: -0.5139 S22: -0.2035 S23: -0.0218 REMARK 3 S31: -0.2433 S32: -0.2482 S33: -0.0970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR WITH SAGITTAL REMARK 200 FOCUSSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 83.045 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 20%(W/V) PEG REMARK 280 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.19650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.10532 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.41100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.19650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.10532 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.41100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.19650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.10532 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.41100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.19650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.10532 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.41100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.19650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.10532 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.41100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.19650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.10532 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.41100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.21064 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.82200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 82.21064 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 74.82200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 82.21064 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 74.82200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 82.21064 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.82200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 82.21064 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 74.82200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 82.21064 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 74.82200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 2 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 29 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 704 REMARK 465 THR A 705 REMARK 465 LYS A 1050 REMARK 465 ASN A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 LEU A 1055 REMARK 465 GLY A 1056 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 814 O HOH A 146 1.75 REMARK 500 O GLN A 745 OE1 GLU A 749 2.10 REMARK 500 OE1 GLU A 907 O HOH A 373 2.13 REMARK 500 NE2 GLN A 862 O HOH A 197 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 264 O HOH A 405 5556 2.14 REMARK 500 O HOH A 342 O HOH A 342 16545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 986 73.54 -100.67 REMARK 500 TYR A1048 41.44 -101.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1057 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1058 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1059 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD A 1060 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GVT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS ENTITY BASED ON THE ISOFORM 2 OF UNIPROTKB/ REMARK 999 SUISS-PROT Q80U58 (PUM2_MOUSE). RESIDUES 829 VAL AND 830 ILE WERE REMARK 999 MISSING IN ISOFORM 2. DBREF 3GVO A 706 1056 UNP Q80U58 PUM2_MOUSE 706 1056 SEQADV 3GVO GLY A 704 UNP Q80U58 EXPRESSION TAG SEQADV 3GVO THR A 705 UNP Q80U58 EXPRESSION TAG SEQADV 3GVO A UNP Q80U58 VAL 829 SEE REMARK 999 SEQADV 3GVO A UNP Q80U58 ILE 830 SEE REMARK 999 SEQRES 1 A 351 GLY THR GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN SEQRES 2 A 351 ASN ARG PHE PRO ASN LEU GLN LEU ARG ASP LEU ILE GLY SEQRES 3 A 351 HIS ILE VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG SEQRES 4 A 351 PHE ILE GLN GLN LYS LEU GLU ARG ALA THR PRO ALA GLU SEQRES 5 A 351 ARG GLN ILE VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR SEQRES 6 A 351 GLN LEU MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN SEQRES 7 A 351 LYS PHE PHE GLU PHE GLY SER LEU ASP GLN LYS LEU ALA SEQRES 8 A 351 LEU ALA THR ARG ILE ARG GLY HIS VAL LEU PRO LEU ALA SEQRES 9 A 351 LEU GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU SEQRES 10 A 351 GLU SER ILE SER SER ASP GLN GLN SER GLU MET VAL LYS SEQRES 11 A 351 GLU LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN SEQRES 12 A 351 ASN GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL SEQRES 13 A 351 GLN PRO GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS SEQRES 14 A 351 GLY GLN VAL PHE VAL LEU SER THR HIS PRO TYR GLY CYS SEQRES 15 A 351 ARG VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU SEQRES 16 A 351 GLN THR LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR SEQRES 17 A 351 GLU GLN LEU VAL GLN ASP GLN TYR GLY ASN TYR VAL ILE SEQRES 18 A 351 GLN HIS VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER SEQRES 19 A 351 LYS ILE VAL SER GLU ILE ARG GLY LYS VAL LEU ALA LEU SEQRES 20 A 351 SER GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS SEQRES 21 A 351 VAL THR HIS ALA SER ARG ALA GLU ARG ALA LEU LEU ILE SEQRES 22 A 351 ASP GLU VAL CYS CYS GLN ASN ASP GLY PRO HIS SER ALA SEQRES 23 A 351 LEU TYR THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL SEQRES 24 A 351 VAL GLN LYS MET ILE ASP MET ALA GLU PRO ALA GLN ARG SEQRES 25 A 351 LYS ILE ILE MET HIS LYS ILE ARG PRO HIS ILE THR THR SEQRES 26 A 351 LEU ARG LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS SEQRES 27 A 351 LEU GLU LYS TYR TYR LEU LYS ASN SER PRO ASP LEU GLY HET GOL A 1 6 HET GOL A1057 6 HET GOL A1058 6 HET GOL A1059 6 HET DTD A1060 16 HETNAM GOL GLYCEROL HETNAM DTD DITHIANE DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 DTD C4 H8 O2 S2 FORMUL 7 HOH *423(H2 O) HELIX 1 1 SER A 708 ASN A 716 1 9 HELIX 2 2 GLN A 723 ILE A 728 5 6 HELIX 3 3 HIS A 730 GLN A 736 1 7 HELIX 4 4 ASP A 737 GLU A 749 1 13 HELIX 5 5 THR A 752 LEU A 764 1 13 HELIX 6 6 ALA A 766 THR A 772 1 7 HELIX 7 7 PHE A 775 GLY A 787 1 13 HELIX 8 8 SER A 788 ARG A 800 1 13 HELIX 9 9 HIS A 802 LEU A 808 1 7 HELIX 10 10 TYR A 811 ILE A 823 1 13 HELIX 11 11 SER A 824 LYS A 835 1 10 HELIX 12 12 GLU A 836 ASP A 838 5 3 HELIX 13 13 HIS A 840 ASP A 847 1 8 HELIX 14 14 ASN A 849 VAL A 861 1 13 HELIX 15 15 GLN A 862 SER A 865 5 4 HELIX 16 16 LEU A 866 PHE A 873 1 8 HELIX 17 17 GLN A 876 THR A 882 1 7 HELIX 18 18 TYR A 885 CYS A 897 1 13 HELIX 19 19 THR A 898 GLN A 911 1 14 HELIX 20 20 HIS A 912 GLN A 918 1 7 HELIX 21 21 TYR A 921 GLY A 933 1 13 HELIX 22 22 ARG A 934 GLU A 944 1 11 HELIX 23 23 LYS A 948 GLN A 954 1 7 HELIX 24 24 PHE A 957 ALA A 969 1 13 HELIX 25 25 SER A 970 CYS A 983 1 14 HELIX 26 26 ALA A 991 ASP A 998 1 8 HELIX 27 27 TYR A 1000 ALA A 1012 1 13 HELIX 28 28 GLU A 1013 ARG A 1025 1 13 HELIX 29 29 HIS A 1027 ARG A 1032 1 6 HELIX 30 30 GLY A 1037 TYR A 1048 1 12 SHEET 1 A 2 ASN A 985 ASP A 986 0 SHEET 2 A 2 HIS A 989 SER A 990 -1 O HIS A 989 N ASP A 986 SITE 1 AC1 9 HOH A 32 HOH A 217 HOH A 269 ARG A 742 SITE 2 AC1 9 GLN A 745 TYR A 778 GLU A 859 CYS A 860 SITE 3 AC1 9 GOL A1058 SITE 1 AC2 6 HOH A 13 HOH A 154 HOH A 318 PHE A 719 SITE 2 AC2 6 LEU A 722 ASP A 726 SITE 1 AC3 10 GOL A 1 HOH A 200 HOH A 215 HOH A 269 SITE 2 AC3 10 HOH A 414 GLN A 745 TYR A 778 GLN A 781 SITE 3 AC3 10 LYS A 782 GLU A 821 SITE 1 AC4 5 HOH A 266 GLY A 729 GLU A 762 GLY A 947 SITE 2 AC4 5 GLN A 984 SITE 1 AC5 6 HOH A 8 HOH A 423 LEU A 789 LEU A 793 SITE 2 AC5 6 SER A 824 GLN A 827 CRYST1 142.393 142.393 112.233 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007023 0.004055 0.000000 0.00000 SCALE2 0.000000 0.008109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008910 0.00000