data_3GX4 # _entry.id 3GX4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GX4 pdb_00003gx4 10.2210/pdb3gx4/pdb NDB PD1292 ? ? RCSB RCSB052415 ? ? WWPDB D_1000052415 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3GX4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GVA 'Same protein without DNA' unspecified PDB 3GYH 'Same protein with DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tubbs, J.L.' 1 'Arvai, A.S.' 2 'Tainer, J.A.' 3 # _citation.id primary _citation.title 'Flipping of alkylated DNA damage bridges base and nucleotide excision repair.' _citation.journal_abbrev Nature _citation.journal_volume 459 _citation.page_first 808 _citation.page_last 813 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19516334 _citation.pdbx_database_id_DOI 10.1038/nature08076 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tubbs, J.L.' 1 ? primary 'Latypov, V.' 2 ? primary 'Kanugula, S.' 3 ? primary 'Butt, A.' 4 ? primary 'Melikishvili, M.' 5 ? primary 'Kraehenbuehl, R.' 6 ? primary 'Fleck, O.' 7 ? primary 'Marriott, A.' 8 ? primary 'Watson, A.J.' 9 ? primary 'Verbeek, B.' 10 ? primary 'McGown, G.' 11 ? primary 'Thorncroft, M.' 12 ? primary 'Santibanez-Koref, M.F.' 13 ? primary 'Millington, C.' 14 ? primary 'Arvai, A.S.' 15 ? primary 'Kroeger, M.D.' 16 ? primary 'Peterson, L.A.' 17 ? primary 'Williams, D.M.' 18 ? primary 'Fried, M.G.' 19 ? primary 'Margison, G.P.' 20 ? primary 'Pegg, A.E.' 21 ? primary 'Tainer, J.A.' 22 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkyltransferase-like protein 1' 13662.412 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3') ; 4005.637 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') ; 3951.586 1 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 2 ? ? ? ? 5 water nat water 18.015 23 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; X ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(6OG)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGGCTAGTA Y ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)' CTACTAGCCATGG Z ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'COBALT HEXAMMINE(III)' NCO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 PHE n 1 7 TYR n 1 8 THR n 1 9 LYS n 1 10 VAL n 1 11 TYR n 1 12 ASP n 1 13 ALA n 1 14 VAL n 1 15 CYS n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 TYR n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 THR n 1 25 TYR n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 GLY n 1 34 MET n 1 35 PRO n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 VAL n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 HIS n 1 48 LEU n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 HIS n 1 54 VAL n 1 55 PRO n 1 56 TRP n 1 57 HIS n 1 58 ARG n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ARG n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 ASP n 1 71 ILE n 1 72 SER n 1 73 ALA n 1 74 GLY n 1 75 GLU n 1 76 GLN n 1 77 ARG n 1 78 GLN n 1 79 LYS n 1 80 ASP n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 GLU n 1 89 ILE n 1 90 TYR n 1 91 GLN n 1 92 THR n 1 93 SER n 1 94 LEU n 1 95 GLY n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 ASN n 1 101 LEU n 1 102 PRO n 1 103 GLU n 1 104 TYR n 1 105 MET n 1 106 TRP n 1 107 LYS n 1 108 PRO n 1 109 GLY n 1 110 SER n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 6OG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DA n 3 7 DG n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'atl1, SPAC1250.04c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4896 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6OG 'DNA linking' n ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 ARG 2 2 2 ARG ARG X . n A 1 3 MET 3 3 3 MET MET X . n A 1 4 ASP 4 4 4 ASP ASP X . n A 1 5 GLU 5 5 5 GLU GLU X . n A 1 6 PHE 6 6 6 PHE PHE X . n A 1 7 TYR 7 7 7 TYR TYR X . n A 1 8 THR 8 8 8 THR THR X . n A 1 9 LYS 9 9 9 LYS LYS X . n A 1 10 VAL 10 10 10 VAL VAL X . n A 1 11 TYR 11 11 11 TYR TYR X . n A 1 12 ASP 12 12 12 ASP ASP X . n A 1 13 ALA 13 13 13 ALA ALA X . n A 1 14 VAL 14 14 14 VAL VAL X . n A 1 15 CYS 15 15 15 CYS CYS X . n A 1 16 GLU 16 16 16 GLU GLU X . n A 1 17 ILE 17 17 17 ILE ILE X . n A 1 18 PRO 18 18 18 PRO PRO X . n A 1 19 TYR 19 19 19 TYR TYR X . n A 1 20 GLY 20 20 20 GLY GLY X . n A 1 21 LYS 21 21 21 LYS LYS X . n A 1 22 VAL 22 22 22 VAL VAL X . n A 1 23 SER 23 23 23 SER SER X . n A 1 24 THR 24 24 24 THR THR X . n A 1 25 TYR 25 25 25 TYR TYR X . n A 1 26 GLY 26 26 26 GLY GLY X . n A 1 27 GLU 27 27 27 GLU GLU X . n A 1 28 ILE 28 28 28 ILE ILE X . n A 1 29 ALA 29 29 29 ALA ALA X . n A 1 30 ARG 30 30 30 ARG ARG X . n A 1 31 TYR 31 31 31 TYR TYR X . n A 1 32 VAL 32 32 32 VAL VAL X . n A 1 33 GLY 33 33 33 GLY GLY X . n A 1 34 MET 34 34 34 MET MET X . n A 1 35 PRO 35 35 35 PRO PRO X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 TYR 37 37 37 TYR TYR X . n A 1 38 ALA 38 38 38 ALA ALA X . n A 1 39 ARG 39 39 39 ARG ARG X . n A 1 40 GLN 40 40 40 GLN GLN X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 GLY 42 42 42 GLY GLY X . n A 1 43 GLN 43 43 43 GLN GLN X . n A 1 44 ALA 44 44 44 ALA ALA X . n A 1 45 MET 45 45 45 MET MET X . n A 1 46 LYS 46 46 46 LYS LYS X . n A 1 47 HIS 47 47 47 HIS HIS X . n A 1 48 LEU 48 48 48 LEU LEU X . n A 1 49 HIS 49 49 49 HIS HIS X . n A 1 50 PRO 50 50 50 PRO PRO X . n A 1 51 GLU 51 51 51 GLU GLU X . n A 1 52 THR 52 52 52 THR THR X . n A 1 53 HIS 53 53 53 HIS HIS X . n A 1 54 VAL 54 54 54 VAL VAL X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 TRP 56 56 56 TRP TRP X . n A 1 57 HIS 57 57 57 HIS HIS X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 VAL 59 59 59 VAL VAL X . n A 1 60 ILE 60 60 60 ILE ILE X . n A 1 61 ASN 61 61 61 ASN ASN X . n A 1 62 SER 62 62 62 SER SER X . n A 1 63 ARG 63 63 63 ARG ARG X . n A 1 64 GLY 64 64 64 GLY GLY X . n A 1 65 THR 65 65 65 THR THR X . n A 1 66 ILE 66 66 66 ILE ILE X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 LYS 68 68 68 LYS LYS X . n A 1 69 ARG 69 69 69 ARG ARG X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 ILE 71 71 71 ILE ILE X . n A 1 72 SER 72 72 72 SER SER X . n A 1 73 ALA 73 73 73 ALA ALA X . n A 1 74 GLY 74 74 74 GLY GLY X . n A 1 75 GLU 75 75 75 GLU GLU X . n A 1 76 GLN 76 76 76 GLN GLN X . n A 1 77 ARG 77 77 77 ARG ARG X . n A 1 78 GLN 78 78 78 GLN GLN X . n A 1 79 LYS 79 79 79 LYS LYS X . n A 1 80 ASP 80 80 80 ASP ASP X . n A 1 81 ARG 81 81 81 ARG ARG X . n A 1 82 LEU 82 82 82 LEU LEU X . n A 1 83 GLU 83 83 83 GLU GLU X . n A 1 84 GLU 84 84 84 GLU GLU X . n A 1 85 GLU 85 85 85 GLU GLU X . n A 1 86 GLY 86 86 86 GLY GLY X . n A 1 87 VAL 87 87 87 VAL VAL X . n A 1 88 GLU 88 88 88 GLU GLU X . n A 1 89 ILE 89 89 89 ILE ILE X . n A 1 90 TYR 90 90 90 TYR TYR X . n A 1 91 GLN 91 91 91 GLN GLN X . n A 1 92 THR 92 92 92 THR THR X . n A 1 93 SER 93 93 93 SER SER X . n A 1 94 LEU 94 94 94 LEU LEU X . n A 1 95 GLY 95 95 95 GLY GLY X . n A 1 96 GLU 96 96 96 GLU GLU X . n A 1 97 TYR 97 97 97 TYR TYR X . n A 1 98 LYS 98 98 98 LYS LYS X . n A 1 99 LEU 99 99 99 LEU LEU X . n A 1 100 ASN 100 100 100 ASN ASN X . n A 1 101 LEU 101 101 101 LEU LEU X . n A 1 102 PRO 102 102 102 PRO PRO X . n A 1 103 GLU 103 103 103 GLU GLU X . n A 1 104 TYR 104 104 104 TYR TYR X . n A 1 105 MET 105 105 105 MET MET X . n A 1 106 TRP 106 106 106 TRP TRP X . n A 1 107 LYS 107 107 107 LYS LYS X . n A 1 108 PRO 108 108 108 PRO PRO X . n A 1 109 GLY 109 109 ? ? ? X . n A 1 110 SER 110 110 ? ? ? X . n A 1 111 HIS 111 111 ? ? ? X . n A 1 112 HIS 112 112 ? ? ? X . n A 1 113 HIS 113 113 ? ? ? X . n A 1 114 HIS 114 114 ? ? ? X . n A 1 115 HIS 115 115 ? ? ? X . n A 1 116 HIS 116 116 ? ? ? X . n B 2 1 DG 1 201 201 DG DG Y . n B 2 2 DC 2 202 202 DC DC Y . n B 2 3 DC 3 203 203 DC DC Y . n B 2 4 DA 4 204 204 DA DA Y . n B 2 5 DT 5 205 205 DT DT Y . n B 2 6 DG 6 206 206 DG DG Y . n B 2 7 6OG 7 207 207 6OG 6OG Y . n B 2 8 DC 8 208 208 DC DC Y . n B 2 9 DT 9 209 209 DT DT Y . n B 2 10 DA 10 210 210 DA DA Y . n B 2 11 DG 11 211 211 DG DG Y . n B 2 12 DT 12 212 212 DT DT Y . n B 2 13 DA 13 213 213 DA DA Y . n C 3 1 DC 1 214 214 DC DC Z . n C 3 2 DT 2 215 215 DT DT Z . n C 3 3 DA 3 216 216 DA DA Z . n C 3 4 DC 4 217 217 DC DC Z . n C 3 5 DT 5 218 218 DT DT Z . n C 3 6 DA 6 219 219 DA DA Z . n C 3 7 DG 7 220 220 DG DG Z . n C 3 8 DC 8 221 221 DC DC Z . n C 3 9 DC 9 222 222 DC DC Z . n C 3 10 DA 10 223 223 DA DA Z . n C 3 11 DT 11 224 224 DT DT Z . n C 3 12 DG 12 225 225 DG DG Z . n C 3 13 DG 13 226 226 DG DG Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NCO 1 302 302 NCO NCO Y . E 4 NCO 1 303 303 NCO NCO Z . F 5 HOH 1 403 403 HOH HOH X . F 5 HOH 2 404 404 HOH HOH X . F 5 HOH 3 405 405 HOH HOH X . F 5 HOH 4 406 406 HOH HOH X . F 5 HOH 5 407 407 HOH HOH X . F 5 HOH 6 408 408 HOH HOH X . F 5 HOH 7 409 409 HOH HOH X . F 5 HOH 8 410 410 HOH HOH X . F 5 HOH 9 412 412 HOH HOH X . F 5 HOH 10 413 413 HOH HOH X . F 5 HOH 11 414 414 HOH HOH X . F 5 HOH 12 415 415 HOH HOH X . F 5 HOH 13 416 416 HOH HOH X . F 5 HOH 14 417 417 HOH HOH X . F 5 HOH 15 418 418 HOH HOH X . F 5 HOH 16 419 419 HOH HOH X . F 5 HOH 17 420 420 HOH HOH X . F 5 HOH 18 421 421 HOH HOH X . F 5 HOH 19 425 425 HOH HOH X . G 5 HOH 1 411 411 HOH HOH Y . G 5 HOH 2 423 423 HOH HOH Y . H 5 HOH 1 422 422 HOH HOH Z . H 5 HOH 2 424 424 HOH HOH Z . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 # _cell.length_a 59.728 _cell.length_b 59.728 _cell.length_c 238.028 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3GX4 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3GX4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 178 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3GX4 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2008-01-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 # _reflns.entry_id 3GX4 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 40.0 _reflns.number_all ? _reflns.number_obs 6342 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3GX4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_number_reflns_obs 6342 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.04 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 93.55 _refine.ls_R_factor_obs 0.23091 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22700 _refine.ls_R_factor_R_free 0.29619 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.6 _refine.ls_number_reflns_R_free 373 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.882 _refine.B_iso_mean 39.897 _refine.aniso_B[1][1] 2.44 _refine.aniso_B[2][2] 2.44 _refine.aniso_B[3][3] -3.66 _refine.aniso_B[1][2] 1.22 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.071 _refine.pdbx_overall_ESU_R_Free 0.400 _refine.overall_SU_ML 0.348 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 39.836 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 528 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1455 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 39.04 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.042 0.021 ? 1515 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4.544 2.404 ? 2164 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 11.007 5.000 ? 107 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.677 23.043 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 24.865 15.000 ? 163 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26.183 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.203 0.200 ? 225 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.018 0.020 ? 980 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.359 0.200 ? 846 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.390 0.200 ? 992 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.234 0.200 ? 97 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.380 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.202 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.811 1.500 ? 558 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.942 2.000 ? 871 'X-RAY DIFFRACTION' ? r_scbond_it 4.409 3.000 ? 1291 'X-RAY DIFFRACTION' ? r_scangle_it 5.973 4.500 ? 1287 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.771 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 79.330 _refine_ls_shell.number_reflns_R_work 286 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.384 _refine_ls_shell.R_factor_R_free 0.452 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 307 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GX4 _struct.title 'Crystal Structure Analysis of S. Pombe ATL in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GX4 _struct_keywords.text 'Alkylated DNA damage repair Methylguanine, DNA damage, DNA repair, DNA-binding, DNA BINDING PROTEIN-DNA COMPLEX' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATL1_SCHPO Q9UTN9 1 ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKP ; 1 ? 2 PDB 3GX4 3GX4 2 GCCATGXCTAGTA ? ? 3 PDB 3GX4 3GX4 3 GGTACCGATCATC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GX4 X 1 ? 108 ? Q9UTN9 1 ? 108 ? 1 108 2 2 3GX4 Y 1 ? 13 ? 3GX4 201 ? 213 ? 201 213 3 3 3GX4 Z 1 ? 13 ? 3GX4 214 ? 226 ? 214 226 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GX4 GLY X 109 ? UNP Q9UTN9 ? ? 'expression tag' 109 1 1 3GX4 SER X 110 ? UNP Q9UTN9 ? ? 'expression tag' 110 2 1 3GX4 HIS X 111 ? UNP Q9UTN9 ? ? 'expression tag' 111 3 1 3GX4 HIS X 112 ? UNP Q9UTN9 ? ? 'expression tag' 112 4 1 3GX4 HIS X 113 ? UNP Q9UTN9 ? ? 'expression tag' 113 5 1 3GX4 HIS X 114 ? UNP Q9UTN9 ? ? 'expression tag' 114 6 1 3GX4 HIS X 115 ? UNP Q9UTN9 ? ? 'expression tag' 115 7 1 3GX4 HIS X 116 ? UNP Q9UTN9 ? ? 'expression tag' 116 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4140 ? 1 MORE -8 ? 1 'SSA (A^2)' 9380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? GLU A 16 ? ARG X 2 GLU X 16 1 ? 15 HELX_P HELX_P2 2 TYR A 25 ? VAL A 32 ? TYR X 25 VAL X 32 1 ? 8 HELX_P HELX_P3 3 TYR A 37 ? HIS A 47 ? TYR X 37 HIS X 47 1 ? 11 HELX_P HELX_P4 4 PRO A 55 ? HIS A 57 ? PRO X 55 HIS X 57 5 ? 3 HELX_P HELX_P5 5 GLU A 75 ? GLU A 83 ? GLU X 75 GLU X 83 1 ? 9 HELX_P HELX_P6 6 GLU A 84 ? GLY A 86 ? GLU X 84 GLY X 86 5 ? 3 HELX_P HELX_P7 7 ASN A 100 ? MET A 105 ? ASN X 100 MET X 105 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 6OG 7 P ? ? Y DG 206 Y 6OG 207 1_555 ? ? ? ? ? ? ? 1.546 ? ? covale2 covale one ? B 6OG 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? Y 6OG 207 Y DC 208 1_555 ? ? ? ? ? ? ? 1.445 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 12 N1 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 12 N2 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? Y DA 204 Z DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? Y DA 204 Z DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? Y DT 205 Z DA 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? Y DT 205 Z DA 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 7 N1 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 7 O6 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 7 N2 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? Y DT 209 Z DA 219 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog18 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? Y DA 210 Z DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? Y DA 210 Z DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? Y DG 211 Z DC 217 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog21 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? Y DT 212 Z DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? Y DT 212 Z DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? Y DA 213 Z DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? Y DA 213 Z DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 23 ? THR A 24 ? SER X 23 THR X 24 A 2 VAL A 59 ? ILE A 60 ? VAL X 59 ILE X 60 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 23 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id X _pdbx_struct_sheet_hbond.range_1_auth_seq_id 23 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 60 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id X _pdbx_struct_sheet_hbond.range_2_auth_seq_id 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software Y NCO 302 ? 5 'BINDING SITE FOR RESIDUE NCO Y 302' AC2 Software Z NCO 303 ? 6 'BINDING SITE FOR RESIDUE NCO Z 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 39 ? ARG X 39 . ? 1_555 ? 2 AC1 5 GLN A 43 ? GLN X 43 . ? 1_555 ? 3 AC1 5 DG B 6 ? DG Y 206 . ? 1_555 ? 4 AC1 5 6OG B 7 ? 6OG Y 207 . ? 1_555 ? 5 AC1 5 DC B 8 ? DC Y 208 . ? 1_555 ? 6 AC2 6 GLU A 51 ? GLU X 51 . ? 12_545 ? 7 AC2 6 DG B 1 ? DG Y 201 . ? 1_555 ? 8 AC2 6 DC B 2 ? DC Y 202 . ? 1_555 ? 9 AC2 6 DC C 1 ? DC Z 214 . ? 6_445 ? 10 AC2 6 DG C 12 ? DG Z 225 . ? 1_555 ? 11 AC2 6 DG C 13 ? DG Z 226 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O X ASP 70 ? ? N X SER 72 ? ? 2.11 2 1 O X LYS 68 ? ? N X ASP 70 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG X ARG 2 ? ? CD X ARG 2 ? ? 1.679 1.515 0.164 0.025 N 2 1 CZ X TYR 7 ? ? CE2 X TYR 7 ? ? 1.470 1.381 0.089 0.013 N 3 1 CE2 X TYR 11 ? ? CD2 X TYR 11 ? ? 1.490 1.389 0.101 0.015 N 4 1 CB X VAL 22 ? ? CG2 X VAL 22 ? ? 1.673 1.524 0.149 0.021 N 5 1 CD X GLU 27 ? ? OE1 X GLU 27 ? ? 1.327 1.252 0.075 0.011 N 6 1 CB X ARG 39 ? ? CG X ARG 39 ? ? 1.354 1.521 -0.167 0.027 N 7 1 CZ X ARG 39 ? ? NH1 X ARG 39 ? ? 1.410 1.326 0.084 0.013 N 8 1 C X GLN 40 ? ? O X GLN 40 ? ? 1.371 1.229 0.142 0.019 N 9 1 CB X TRP 56 ? ? CG X TRP 56 ? ? 1.369 1.498 -0.129 0.018 N 10 1 N X GLU 75 ? ? CA X GLU 75 ? ? 1.610 1.459 0.151 0.020 N 11 1 CG X GLU 75 ? ? CD X GLU 75 ? ? 1.606 1.515 0.091 0.015 N 12 1 CD X GLU 75 ? ? OE1 X GLU 75 ? ? 1.320 1.252 0.068 0.011 N 13 1 CG X GLU 84 ? ? CD X GLU 84 ? ? 1.639 1.515 0.124 0.015 N 14 1 CD X GLU 84 ? ? OE1 X GLU 84 ? ? 1.346 1.252 0.094 0.011 N 15 1 CD X GLU 84 ? ? OE2 X GLU 84 ? ? 1.327 1.252 0.075 0.011 N 16 1 CG X TYR 90 ? ? CD1 X TYR 90 ? ? 1.471 1.387 0.084 0.013 N 17 1 CE1 X TYR 90 ? ? CZ X TYR 90 ? ? 1.498 1.381 0.117 0.013 N 18 1 CZ X TYR 90 ? ? CE2 X TYR 90 ? ? 1.506 1.381 0.125 0.013 N 19 1 CB X LYS 98 ? ? CG X LYS 98 ? ? 1.309 1.521 -0.212 0.027 N 20 1 CG X GLU 103 ? ? CD X GLU 103 ? ? 1.615 1.515 0.100 0.015 N 21 1 CA X MET 105 ? ? CB X MET 105 ? ? 1.402 1.535 -0.133 0.022 N 22 1 "O3'" Y DG 201 ? ? "C3'" Y DG 201 ? ? 1.364 1.419 -0.055 0.006 N 23 1 C5 Y DG 201 ? ? N7 Y DG 201 ? ? 1.351 1.388 -0.037 0.006 N 24 1 C8 Y DG 201 ? ? N9 Y DG 201 ? ? 1.326 1.374 -0.048 0.007 N 25 1 "O3'" Y DC 202 ? ? "C3'" Y DC 202 ? ? 1.365 1.419 -0.054 0.006 N 26 1 "O3'" Y DC 203 ? ? "C3'" Y DC 203 ? ? 1.381 1.419 -0.038 0.006 N 27 1 N3 Y DA 204 ? ? C4 Y DA 204 ? ? 1.307 1.344 -0.037 0.006 N 28 1 C6 Y DA 204 ? ? N1 Y DA 204 ? ? 1.306 1.351 -0.045 0.007 N 29 1 "O3'" Y DT 205 ? ? "C3'" Y DT 205 ? ? 1.354 1.419 -0.065 0.006 N 30 1 C4 Y DT 205 ? ? C5 Y DT 205 ? ? 1.389 1.445 -0.056 0.009 N 31 1 "O3'" Y DG 206 ? ? "C3'" Y DG 206 ? ? 1.346 1.419 -0.073 0.006 N 32 1 C5 Y DG 206 ? ? N7 Y DG 206 ? ? 1.347 1.388 -0.041 0.006 N 33 1 "O3'" Y 6OG 207 ? ? P Y DC 208 ? ? 1.445 1.607 -0.162 0.012 Y 34 1 P Y DC 208 ? ? "O5'" Y DC 208 ? ? 1.522 1.593 -0.071 0.010 N 35 1 C2 Y DC 208 ? ? O2 Y DC 208 ? ? 1.181 1.240 -0.059 0.009 N 36 1 N1 Y DC 208 ? ? C6 Y DC 208 ? ? 1.326 1.367 -0.041 0.006 N 37 1 C2 Y DC 208 ? ? N3 Y DC 208 ? ? 1.299 1.353 -0.054 0.008 N 38 1 N3 Y DC 208 ? ? C4 Y DC 208 ? ? 1.286 1.335 -0.049 0.007 N 39 1 P Y DT 209 ? ? "O5'" Y DT 209 ? ? 1.518 1.593 -0.075 0.010 N 40 1 N1 Y DT 209 ? ? C2 Y DT 209 ? ? 1.324 1.376 -0.052 0.008 N 41 1 C6 Y DT 209 ? ? N1 Y DT 209 ? ? 1.336 1.378 -0.042 0.007 N 42 1 C2 Y DT 209 ? ? O2 Y DT 209 ? ? 1.172 1.220 -0.048 0.008 N 43 1 P Y DA 210 ? ? "O5'" Y DA 210 ? ? 1.505 1.593 -0.088 0.010 N 44 1 "O3'" Y DA 210 ? ? "C3'" Y DA 210 ? ? 1.361 1.419 -0.058 0.006 N 45 1 N3 Y DA 210 ? ? C4 Y DA 210 ? ? 1.306 1.344 -0.038 0.006 N 46 1 C4 Y DA 210 ? ? C5 Y DA 210 ? ? 1.340 1.383 -0.043 0.007 N 47 1 "O3'" Y DG 211 ? ? "C3'" Y DG 211 ? ? 1.364 1.419 -0.055 0.006 N 48 1 N9 Y DG 211 ? ? C4 Y DG 211 ? ? 1.326 1.375 -0.049 0.008 N 49 1 C4 Y DT 212 ? ? C5 Y DT 212 ? ? 1.388 1.445 -0.057 0.009 N 50 1 "O3'" Y DA 213 ? ? "C3'" Y DA 213 ? ? 1.359 1.419 -0.060 0.006 N 51 1 "O3'" Z DC 214 ? ? "C3'" Z DC 214 ? ? 1.358 1.419 -0.061 0.006 N 52 1 "O3'" Z DT 215 ? ? "C3'" Z DT 215 ? ? 1.377 1.419 -0.042 0.006 N 53 1 C4 Z DT 215 ? ? C5 Z DT 215 ? ? 1.371 1.445 -0.074 0.009 N 54 1 "O3'" Z DA 216 ? ? "C3'" Z DA 216 ? ? 1.334 1.419 -0.085 0.006 N 55 1 N3 Z DA 216 ? ? C4 Z DA 216 ? ? 1.306 1.344 -0.038 0.006 N 56 1 C4 Z DA 216 ? ? C5 Z DA 216 ? ? 1.336 1.383 -0.047 0.007 N 57 1 C6 Z DA 216 ? ? N1 Z DA 216 ? ? 1.308 1.351 -0.043 0.007 N 58 1 "O3'" Z DC 217 ? ? "C3'" Z DC 217 ? ? 1.357 1.419 -0.062 0.006 N 59 1 N1 Z DC 217 ? ? C6 Z DC 217 ? ? 1.329 1.367 -0.038 0.006 N 60 1 N3 Z DC 217 ? ? C4 Z DC 217 ? ? 1.283 1.335 -0.052 0.007 N 61 1 "O3'" Z DT 218 ? ? "C3'" Z DT 218 ? ? 1.372 1.419 -0.047 0.006 N 62 1 N1 Z DT 218 ? ? C2 Z DT 218 ? ? 1.326 1.376 -0.050 0.008 N 63 1 C2 Z DT 218 ? ? N3 Z DT 218 ? ? 1.324 1.373 -0.049 0.008 N 64 1 N3 Z DA 219 ? ? C4 Z DA 219 ? ? 1.302 1.344 -0.042 0.006 N 65 1 C5 Z DA 219 ? ? C6 Z DA 219 ? ? 1.348 1.406 -0.058 0.009 N 66 1 C6 Z DA 219 ? ? N1 Z DA 219 ? ? 1.309 1.351 -0.042 0.007 N 67 1 C5 Z DA 219 ? ? N7 Z DA 219 ? ? 1.343 1.388 -0.045 0.006 N 68 1 N9 Z DA 219 ? ? C4 Z DA 219 ? ? 1.333 1.374 -0.041 0.006 N 69 1 "O3'" Z DG 220 ? ? "C3'" Z DG 220 ? ? 1.317 1.419 -0.102 0.006 N 70 1 N1 Z DG 220 ? ? C2 Z DG 220 ? ? 1.322 1.373 -0.051 0.008 N 71 1 C5 Z DG 220 ? ? N7 Z DG 220 ? ? 1.348 1.388 -0.040 0.006 N 72 1 N7 Z DG 220 ? ? C8 Z DG 220 ? ? 1.268 1.305 -0.037 0.006 N 73 1 "O3'" Z DC 221 ? ? "C3'" Z DC 221 ? ? 1.336 1.419 -0.083 0.006 N 74 1 N1 Z DC 221 ? ? C6 Z DC 221 ? ? 1.327 1.367 -0.040 0.006 N 75 1 C2 Z DC 221 ? ? N3 Z DC 221 ? ? 1.302 1.353 -0.051 0.008 N 76 1 N3 Z DC 221 ? ? C4 Z DC 221 ? ? 1.287 1.335 -0.048 0.007 N 77 1 "O3'" Z DC 221 ? ? P Z DC 222 ? ? 1.505 1.607 -0.102 0.012 Y 78 1 P Z DC 222 ? ? "O5'" Z DC 222 ? ? 1.525 1.593 -0.068 0.010 N 79 1 "O3'" Z DC 222 ? ? "C3'" Z DC 222 ? ? 1.382 1.419 -0.037 0.006 N 80 1 N1 Z DC 222 ? ? C6 Z DC 222 ? ? 1.325 1.367 -0.042 0.006 N 81 1 N3 Z DC 222 ? ? C4 Z DC 222 ? ? 1.286 1.335 -0.049 0.007 N 82 1 P Z DA 223 ? ? "O5'" Z DA 223 ? ? 1.521 1.593 -0.072 0.010 N 83 1 "O3'" Z DA 223 ? ? "C3'" Z DA 223 ? ? 1.355 1.419 -0.064 0.006 N 84 1 N3 Z DA 223 ? ? C4 Z DA 223 ? ? 1.304 1.344 -0.040 0.006 N 85 1 C6 Z DA 223 ? ? N1 Z DA 223 ? ? 1.306 1.351 -0.045 0.007 N 86 1 C8 Z DA 223 ? ? N9 Z DA 223 ? ? 1.322 1.373 -0.051 0.008 N 87 1 P Z DT 224 ? ? "O5'" Z DT 224 ? ? 1.530 1.593 -0.063 0.010 N 88 1 N1 Z DT 224 ? ? C2 Z DT 224 ? ? 1.323 1.376 -0.053 0.008 N 89 1 N3 Z DT 224 ? ? C4 Z DT 224 ? ? 1.334 1.382 -0.048 0.008 N 90 1 C4 Z DT 224 ? ? C5 Z DT 224 ? ? 1.379 1.445 -0.066 0.009 N 91 1 "O3'" Z DG 226 ? ? "C3'" Z DG 226 ? ? 1.374 1.419 -0.045 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE X ARG 2 ? ? CZ X ARG 2 ? ? NH1 X ARG 2 ? ? 127.26 120.30 6.96 0.50 N 2 1 NE X ARG 2 ? ? CZ X ARG 2 ? ? NH2 X ARG 2 ? ? 115.63 120.30 -4.67 0.50 N 3 1 CB X ASP 4 ? ? CG X ASP 4 ? ? OD1 X ASP 4 ? ? 126.83 118.30 8.53 0.90 N 4 1 CB X ASP 4 ? ? CG X ASP 4 ? ? OD2 X ASP 4 ? ? 109.22 118.30 -9.08 0.90 N 5 1 CA X CYS 15 ? ? CB X CYS 15 ? ? SG X CYS 15 ? ? 98.74 114.00 -15.26 1.80 N 6 1 NE X ARG 39 ? ? CZ X ARG 39 ? ? NH1 X ARG 39 ? ? 117.23 120.30 -3.07 0.50 N 7 1 CB X HIS 47 ? ? CA X HIS 47 ? ? C X HIS 47 ? ? 97.69 110.40 -12.71 2.00 N 8 1 C X HIS 49 ? ? N X PRO 50 ? ? CA X PRO 50 ? ? 103.77 119.30 -15.53 1.50 Y 9 1 C X HIS 49 ? ? N X PRO 50 ? ? CD X PRO 50 ? ? 141.51 128.40 13.11 2.10 Y 10 1 NE X ARG 58 ? ? CZ X ARG 58 ? ? NH2 X ARG 58 ? ? 115.48 120.30 -4.82 0.50 N 11 1 NE X ARG 63 ? ? CZ X ARG 63 ? ? NH2 X ARG 63 ? ? 117.26 120.30 -3.04 0.50 N 12 1 NE X ARG 69 ? ? CZ X ARG 69 ? ? NH1 X ARG 69 ? ? 123.65 120.30 3.35 0.50 N 13 1 N X GLY 74 ? ? CA X GLY 74 ? ? C X GLY 74 ? ? 129.76 113.10 16.66 2.50 N 14 1 CB X GLU 75 ? ? CA X GLU 75 ? ? C X GLU 75 ? ? 95.55 110.40 -14.85 2.00 N 15 1 CA X MET 105 ? ? CB X MET 105 ? ? CG X MET 105 ? ? 102.73 113.30 -10.57 1.70 N 16 1 "O4'" Y DC 202 ? ? "C4'" Y DC 202 ? ? "C3'" Y DC 202 ? ? 101.29 104.50 -3.21 0.40 N 17 1 "O4'" Y DC 203 ? ? "C1'" Y DC 203 ? ? "C2'" Y DC 203 ? ? 100.71 105.90 -5.19 0.80 N 18 1 "C3'" Y DA 204 ? ? "C2'" Y DA 204 ? ? "C1'" Y DA 204 ? ? 96.46 102.40 -5.94 0.80 N 19 1 "O4'" Y DA 204 ? ? "C1'" Y DA 204 ? ? "C2'" Y DA 204 ? ? 100.21 105.90 -5.69 0.80 N 20 1 "O4'" Y DT 205 ? ? "C4'" Y DT 205 ? ? "C3'" Y DT 205 ? ? 101.65 104.50 -2.85 0.40 N 21 1 "C4'" Y DT 205 ? ? "C3'" Y DT 205 ? ? "C2'" Y DT 205 ? ? 97.43 102.20 -4.77 0.70 N 22 1 "O4'" Y DT 205 ? ? "C1'" Y DT 205 ? ? N1 Y DT 205 ? ? 112.69 108.30 4.39 0.30 N 23 1 N3 Y DT 205 ? ? C4 Y DT 205 ? ? O4 Y DT 205 ? ? 123.72 119.90 3.82 0.60 N 24 1 C5 Y DT 205 ? ? C4 Y DT 205 ? ? O4 Y DT 205 ? ? 119.47 124.90 -5.43 0.70 N 25 1 "O4'" Y DG 206 ? ? "C4'" Y DG 206 ? ? "C3'" Y DG 206 ? ? 99.30 104.50 -5.20 0.40 N 26 1 "C4'" Y DG 206 ? ? "C3'" Y DG 206 ? ? "C2'" Y DG 206 ? ? 95.36 102.20 -6.84 0.70 N 27 1 "O4'" Y DG 206 ? ? "C1'" Y DG 206 ? ? N9 Y DG 206 ? ? 115.60 108.30 7.30 0.30 N 28 1 "O3'" Y DG 206 ? ? P Y 6OG 207 ? ? OP2 Y 6OG 207 ? ? 118.57 110.50 8.07 1.10 Y 29 1 "C3'" Y 6OG 207 ? ? "O3'" Y 6OG 207 ? ? P Y DC 208 ? ? 97.78 119.70 -21.92 1.20 Y 30 1 "O3'" Y 6OG 207 ? ? P Y DC 208 ? ? OP2 Y DC 208 ? ? 134.47 110.50 23.97 1.10 Y 31 1 OP1 Y DC 208 ? ? P Y DC 208 ? ? OP2 Y DC 208 ? ? 110.14 119.60 -9.46 1.50 N 32 1 "O4'" Y DC 208 ? ? "C1'" Y DC 208 ? ? "C2'" Y DC 208 ? ? 99.50 105.90 -6.40 0.80 N 33 1 "O4'" Y DT 209 ? ? "C1'" Y DT 209 ? ? "C2'" Y DT 209 ? ? 100.10 105.90 -5.80 0.80 N 34 1 "O5'" Y DA 210 ? ? "C5'" Y DA 210 ? ? "C4'" Y DA 210 ? ? 104.50 109.40 -4.90 0.80 N 35 1 "O4'" Y DA 210 ? ? "C1'" Y DA 210 ? ? N9 Y DA 210 ? ? 116.91 108.30 8.61 0.30 N 36 1 "O4'" Y DG 211 ? ? "C4'" Y DG 211 ? ? "C3'" Y DG 211 ? ? 98.20 104.50 -6.30 0.40 N 37 1 "O4'" Y DG 211 ? ? "C1'" Y DG 211 ? ? N9 Y DG 211 ? ? 102.12 108.00 -5.88 0.70 N 38 1 C4 Y DG 211 ? ? C5 Y DG 211 ? ? N7 Y DG 211 ? ? 113.52 110.80 2.72 0.40 N 39 1 "O4'" Y DT 212 ? ? "C1'" Y DT 212 ? ? "C2'" Y DT 212 ? ? 100.51 105.90 -5.39 0.80 N 40 1 "O4'" Y DT 212 ? ? "C1'" Y DT 212 ? ? N1 Y DT 212 ? ? 100.78 108.00 -7.22 0.70 N 41 1 "C3'" Y DA 213 ? ? "C2'" Y DA 213 ? ? "C1'" Y DA 213 ? ? 97.25 102.40 -5.15 0.80 N 42 1 "O4'" Y DA 213 ? ? "C1'" Y DA 213 ? ? N9 Y DA 213 ? ? 112.89 108.30 4.59 0.30 N 43 1 "O4'" Z DC 214 ? ? "C4'" Z DC 214 ? ? "C3'" Z DC 214 ? ? 100.30 104.50 -4.20 0.40 N 44 1 "O4'" Z DC 214 ? ? "C1'" Z DC 214 ? ? N1 Z DC 214 ? ? 111.47 108.30 3.17 0.30 N 45 1 "O4'" Z DT 215 ? ? "C1'" Z DT 215 ? ? "C2'" Z DT 215 ? ? 100.57 105.90 -5.33 0.80 N 46 1 N3 Z DT 215 ? ? C4 Z DT 215 ? ? O4 Z DT 215 ? ? 125.93 119.90 6.03 0.60 N 47 1 C5 Z DT 215 ? ? C4 Z DT 215 ? ? O4 Z DT 215 ? ? 116.57 124.90 -8.33 0.70 N 48 1 C4 Z DT 215 ? ? C5 Z DT 215 ? ? C7 Z DT 215 ? ? 115.36 119.00 -3.64 0.60 N 49 1 "O4'" Z DA 216 ? ? "C4'" Z DA 216 ? ? "C3'" Z DA 216 ? ? 101.02 104.50 -3.48 0.40 N 50 1 "O4'" Z DA 216 ? ? "C1'" Z DA 216 ? ? N9 Z DA 216 ? ? 114.14 108.30 5.84 0.30 N 51 1 P Z DC 217 ? ? "O5'" Z DC 217 ? ? "C5'" Z DC 217 ? ? 108.87 120.90 -12.03 1.60 N 52 1 "O4'" Z DC 217 ? ? "C1'" Z DC 217 ? ? N1 Z DC 217 ? ? 115.91 108.30 7.61 0.30 N 53 1 "C3'" Z DC 217 ? ? "O3'" Z DC 217 ? ? P Z DT 218 ? ? 111.84 119.70 -7.86 1.20 Y 54 1 "C4'" Z DT 218 ? ? "C3'" Z DT 218 ? ? "C2'" Z DT 218 ? ? 97.53 102.20 -4.67 0.70 N 55 1 "O4'" Z DA 219 ? ? "C4'" Z DA 219 ? ? "C3'" Z DA 219 ? ? 101.39 104.50 -3.11 0.40 N 56 1 "C4'" Z DA 219 ? ? "C3'" Z DA 219 ? ? "C2'" Z DA 219 ? ? 96.62 102.20 -5.58 0.70 N 57 1 "C3'" Z DA 219 ? ? "C2'" Z DA 219 ? ? "C1'" Z DA 219 ? ? 94.08 102.40 -8.32 0.80 N 58 1 "O4'" Z DA 219 ? ? "C1'" Z DA 219 ? ? N9 Z DA 219 ? ? 115.45 108.30 7.15 0.30 N 59 1 C2 Z DA 219 ? ? N3 Z DA 219 ? ? C4 Z DA 219 ? ? 107.17 110.60 -3.43 0.50 N 60 1 "O4'" Z DC 221 ? ? "C4'" Z DC 221 ? ? "C3'" Z DC 221 ? ? 101.22 104.50 -3.28 0.40 N 61 1 "O4'" Z DC 221 ? ? "C1'" Z DC 221 ? ? N1 Z DC 221 ? ? 101.74 108.00 -6.26 0.70 N 62 1 "C3'" Z DC 221 ? ? "O3'" Z DC 221 ? ? P Z DC 222 ? ? 112.19 119.70 -7.51 1.20 Y 63 1 "C4'" Z DC 222 ? ? "C3'" Z DC 222 ? ? "C2'" Z DC 222 ? ? 95.67 102.20 -6.53 0.70 N 64 1 "O4'" Z DC 222 ? ? "C1'" Z DC 222 ? ? N1 Z DC 222 ? ? 116.10 108.30 7.80 0.30 N 65 1 N3 Z DT 224 ? ? C4 Z DT 224 ? ? O4 Z DT 224 ? ? 124.28 119.90 4.38 0.60 N 66 1 C4 Z DT 224 ? ? C5 Z DT 224 ? ? C7 Z DT 224 ? ? 115.03 119.00 -3.97 0.60 N 67 1 "O4'" Z DG 225 ? ? "C1'" Z DG 225 ? ? N9 Z DG 225 ? ? 113.53 108.30 5.23 0.30 N 68 1 "O4'" Z DG 226 ? ? "C1'" Z DG 226 ? ? "C2'" Z DG 226 ? ? 98.67 105.90 -7.23 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR X 19 ? ? -33.68 134.07 2 1 MET X 34 ? ? -119.04 62.84 3 1 TYR X 37 ? ? -92.39 38.67 4 1 HIS X 47 ? ? -81.43 38.31 5 1 PRO X 50 ? ? -70.15 31.07 6 1 PRO X 55 ? ? -70.48 49.10 7 1 ARG X 69 ? ? 46.17 20.77 8 1 ASP X 70 ? ? 14.01 -115.42 9 1 ILE X 71 ? ? -6.23 91.25 10 1 SER X 72 ? ? 61.26 161.84 11 1 GLU X 75 ? ? -34.52 -2.28 12 1 TYR X 90 ? ? -125.62 -161.74 13 1 SER X 93 ? ? -37.20 119.24 14 1 LEU X 94 ? ? 73.99 82.89 15 1 GLU X 96 ? ? -3.44 94.88 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY X 74 ? ? GLU X 75 ? ? 147.42 2 1 GLU X 75 ? ? GLN X 76 ? ? 145.83 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 6OG _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id Y _pdbx_struct_mod_residue.auth_comp_id 6OG _pdbx_struct_mod_residue.auth_seq_id 207 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id X _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 404 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 29.0633 _pdbx_refine_tls.origin_y -27.9930 _pdbx_refine_tls.origin_z 3.7723 _pdbx_refine_tls.T[1][1] 0.0593 _pdbx_refine_tls.T[2][2] 0.2120 _pdbx_refine_tls.T[3][3] 0.0590 _pdbx_refine_tls.T[1][2] -0.0016 _pdbx_refine_tls.T[1][3] 0.0463 _pdbx_refine_tls.T[2][3] 0.0001 _pdbx_refine_tls.L[1][1] 0.7165 _pdbx_refine_tls.L[2][2] 1.2365 _pdbx_refine_tls.L[3][3] 2.0735 _pdbx_refine_tls.L[1][2] -0.2181 _pdbx_refine_tls.L[1][3] 0.4100 _pdbx_refine_tls.L[2][3] -0.0609 _pdbx_refine_tls.S[1][1] -0.0611 _pdbx_refine_tls.S[2][2] 0.0473 _pdbx_refine_tls.S[3][3] 0.0138 _pdbx_refine_tls.S[1][2] -0.0173 _pdbx_refine_tls.S[1][3] -0.0012 _pdbx_refine_tls.S[2][3] 0.0033 _pdbx_refine_tls.S[2][1] -0.0088 _pdbx_refine_tls.S[3][1] 0.1335 _pdbx_refine_tls.S[3][2] -0.1118 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 108 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 Y 201 Y 213 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 Z 214 Z 226 ? . . . . ? 'X-RAY DIFFRACTION' 4 1 X 403 X 425 ? . . . . ? 'X-RAY DIFFRACTION' 5 1 Y 302 Y 302 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X GLY 109 ? A GLY 109 2 1 Y 1 X SER 110 ? A SER 110 3 1 Y 1 X HIS 111 ? A HIS 111 4 1 Y 1 X HIS 112 ? A HIS 112 5 1 Y 1 X HIS 113 ? A HIS 113 6 1 Y 1 X HIS 114 ? A HIS 114 7 1 Y 1 X HIS 115 ? A HIS 115 8 1 Y 1 X HIS 116 ? A HIS 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6OG P P N N 1 6OG OP1 O N N 2 6OG OP2 O N N 3 6OG "O5'" O N N 4 6OG N9 N Y N 5 6OG C4 C Y N 6 6OG N3 N Y N 7 6OG C2 C Y N 8 6OG N2 N N N 9 6OG N1 N Y N 10 6OG C6 C Y N 11 6OG O6 O N N 12 6OG C5 C Y N 13 6OG N7 N Y N 14 6OG C8 C Y N 15 6OG "C2'" C N N 16 6OG "C5'" C N N 17 6OG "C4'" C N R 18 6OG "O4'" O N N 19 6OG "C1'" C N R 20 6OG "C3'" C N S 21 6OG "O3'" O N N 22 6OG C C N N 23 6OG HOP2 H N N 24 6OG HN21 H N N 25 6OG HN22 H N N 26 6OG H8 H N N 27 6OG "H2'" H N N 28 6OG "H2''" H N N 29 6OG "H5'" H N N 30 6OG "H5''" H N N 31 6OG "H4'" H N N 32 6OG "H1'" H N N 33 6OG "H3'" H N N 34 6OG "HO3'" H N N 35 6OG H1 H N N 36 6OG H2 H N N 37 6OG H3 H N N 38 6OG OP3 O N N 39 6OG HOP3 H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 GLN N N N N 271 GLN CA C N S 272 GLN C C N N 273 GLN O O N N 274 GLN CB C N N 275 GLN CG C N N 276 GLN CD C N N 277 GLN OE1 O N N 278 GLN NE2 N N N 279 GLN OXT O N N 280 GLN H H N N 281 GLN H2 H N N 282 GLN HA H N N 283 GLN HB2 H N N 284 GLN HB3 H N N 285 GLN HG2 H N N 286 GLN HG3 H N N 287 GLN HE21 H N N 288 GLN HE22 H N N 289 GLN HXT H N N 290 GLU N N N N 291 GLU CA C N S 292 GLU C C N N 293 GLU O O N N 294 GLU CB C N N 295 GLU CG C N N 296 GLU CD C N N 297 GLU OE1 O N N 298 GLU OE2 O N N 299 GLU OXT O N N 300 GLU H H N N 301 GLU H2 H N N 302 GLU HA H N N 303 GLU HB2 H N N 304 GLU HB3 H N N 305 GLU HG2 H N N 306 GLU HG3 H N N 307 GLU HE2 H N N 308 GLU HXT H N N 309 GLY N N N N 310 GLY CA C N N 311 GLY C C N N 312 GLY O O N N 313 GLY OXT O N N 314 GLY H H N N 315 GLY H2 H N N 316 GLY HA2 H N N 317 GLY HA3 H N N 318 GLY HXT H N N 319 HIS N N N N 320 HIS CA C N S 321 HIS C C N N 322 HIS O O N N 323 HIS CB C N N 324 HIS CG C Y N 325 HIS ND1 N Y N 326 HIS CD2 C Y N 327 HIS CE1 C Y N 328 HIS NE2 N Y N 329 HIS OXT O N N 330 HIS H H N N 331 HIS H2 H N N 332 HIS HA H N N 333 HIS HB2 H N N 334 HIS HB3 H N N 335 HIS HD1 H N N 336 HIS HD2 H N N 337 HIS HE1 H N N 338 HIS HE2 H N N 339 HIS HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 ILE N N N N 344 ILE CA C N S 345 ILE C C N N 346 ILE O O N N 347 ILE CB C N S 348 ILE CG1 C N N 349 ILE CG2 C N N 350 ILE CD1 C N N 351 ILE OXT O N N 352 ILE H H N N 353 ILE H2 H N N 354 ILE HA H N N 355 ILE HB H N N 356 ILE HG12 H N N 357 ILE HG13 H N N 358 ILE HG21 H N N 359 ILE HG22 H N N 360 ILE HG23 H N N 361 ILE HD11 H N N 362 ILE HD12 H N N 363 ILE HD13 H N N 364 ILE HXT H N N 365 LEU N N N N 366 LEU CA C N S 367 LEU C C N N 368 LEU O O N N 369 LEU CB C N N 370 LEU CG C N N 371 LEU CD1 C N N 372 LEU CD2 C N N 373 LEU OXT O N N 374 LEU H H N N 375 LEU H2 H N N 376 LEU HA H N N 377 LEU HB2 H N N 378 LEU HB3 H N N 379 LEU HG H N N 380 LEU HD11 H N N 381 LEU HD12 H N N 382 LEU HD13 H N N 383 LEU HD21 H N N 384 LEU HD22 H N N 385 LEU HD23 H N N 386 LEU HXT H N N 387 LYS N N N N 388 LYS CA C N S 389 LYS C C N N 390 LYS O O N N 391 LYS CB C N N 392 LYS CG C N N 393 LYS CD C N N 394 LYS CE C N N 395 LYS NZ N N N 396 LYS OXT O N N 397 LYS H H N N 398 LYS H2 H N N 399 LYS HA H N N 400 LYS HB2 H N N 401 LYS HB3 H N N 402 LYS HG2 H N N 403 LYS HG3 H N N 404 LYS HD2 H N N 405 LYS HD3 H N N 406 LYS HE2 H N N 407 LYS HE3 H N N 408 LYS HZ1 H N N 409 LYS HZ2 H N N 410 LYS HZ3 H N N 411 LYS HXT H N N 412 MET N N N N 413 MET CA C N S 414 MET C C N N 415 MET O O N N 416 MET CB C N N 417 MET CG C N N 418 MET SD S N N 419 MET CE C N N 420 MET OXT O N N 421 MET H H N N 422 MET H2 H N N 423 MET HA H N N 424 MET HB2 H N N 425 MET HB3 H N N 426 MET HG2 H N N 427 MET HG3 H N N 428 MET HE1 H N N 429 MET HE2 H N N 430 MET HE3 H N N 431 MET HXT H N N 432 NCO CO CO N N 433 NCO N1 N N N 434 NCO N2 N N N 435 NCO N3 N N N 436 NCO N4 N N N 437 NCO N5 N N N 438 NCO N6 N N N 439 NCO HN11 H N N 440 NCO HN12 H N N 441 NCO HN13 H N N 442 NCO HN21 H N N 443 NCO HN22 H N N 444 NCO HN23 H N N 445 NCO HN31 H N N 446 NCO HN32 H N N 447 NCO HN33 H N N 448 NCO HN41 H N N 449 NCO HN42 H N N 450 NCO HN43 H N N 451 NCO HN51 H N N 452 NCO HN52 H N N 453 NCO HN53 H N N 454 NCO HN61 H N N 455 NCO HN62 H N N 456 NCO HN63 H N N 457 PHE N N N N 458 PHE CA C N S 459 PHE C C N N 460 PHE O O N N 461 PHE CB C N N 462 PHE CG C Y N 463 PHE CD1 C Y N 464 PHE CD2 C Y N 465 PHE CE1 C Y N 466 PHE CE2 C Y N 467 PHE CZ C Y N 468 PHE OXT O N N 469 PHE H H N N 470 PHE H2 H N N 471 PHE HA H N N 472 PHE HB2 H N N 473 PHE HB3 H N N 474 PHE HD1 H N N 475 PHE HD2 H N N 476 PHE HE1 H N N 477 PHE HE2 H N N 478 PHE HZ H N N 479 PHE HXT H N N 480 PRO N N N N 481 PRO CA C N S 482 PRO C C N N 483 PRO O O N N 484 PRO CB C N N 485 PRO CG C N N 486 PRO CD C N N 487 PRO OXT O N N 488 PRO H H N N 489 PRO HA H N N 490 PRO HB2 H N N 491 PRO HB3 H N N 492 PRO HG2 H N N 493 PRO HG3 H N N 494 PRO HD2 H N N 495 PRO HD3 H N N 496 PRO HXT H N N 497 SER N N N N 498 SER CA C N S 499 SER C C N N 500 SER O O N N 501 SER CB C N N 502 SER OG O N N 503 SER OXT O N N 504 SER H H N N 505 SER H2 H N N 506 SER HA H N N 507 SER HB2 H N N 508 SER HB3 H N N 509 SER HG H N N 510 SER HXT H N N 511 THR N N N N 512 THR CA C N S 513 THR C C N N 514 THR O O N N 515 THR CB C N R 516 THR OG1 O N N 517 THR CG2 C N N 518 THR OXT O N N 519 THR H H N N 520 THR H2 H N N 521 THR HA H N N 522 THR HB H N N 523 THR HG1 H N N 524 THR HG21 H N N 525 THR HG22 H N N 526 THR HG23 H N N 527 THR HXT H N N 528 TRP N N N N 529 TRP CA C N S 530 TRP C C N N 531 TRP O O N N 532 TRP CB C N N 533 TRP CG C Y N 534 TRP CD1 C Y N 535 TRP CD2 C Y N 536 TRP NE1 N Y N 537 TRP CE2 C Y N 538 TRP CE3 C Y N 539 TRP CZ2 C Y N 540 TRP CZ3 C Y N 541 TRP CH2 C Y N 542 TRP OXT O N N 543 TRP H H N N 544 TRP H2 H N N 545 TRP HA H N N 546 TRP HB2 H N N 547 TRP HB3 H N N 548 TRP HD1 H N N 549 TRP HE1 H N N 550 TRP HE3 H N N 551 TRP HZ2 H N N 552 TRP HZ3 H N N 553 TRP HH2 H N N 554 TRP HXT H N N 555 TYR N N N N 556 TYR CA C N S 557 TYR C C N N 558 TYR O O N N 559 TYR CB C N N 560 TYR CG C Y N 561 TYR CD1 C Y N 562 TYR CD2 C Y N 563 TYR CE1 C Y N 564 TYR CE2 C Y N 565 TYR CZ C Y N 566 TYR OH O N N 567 TYR OXT O N N 568 TYR H H N N 569 TYR H2 H N N 570 TYR HA H N N 571 TYR HB2 H N N 572 TYR HB3 H N N 573 TYR HD1 H N N 574 TYR HD2 H N N 575 TYR HE1 H N N 576 TYR HE2 H N N 577 TYR HH H N N 578 TYR HXT H N N 579 VAL N N N N 580 VAL CA C N S 581 VAL C C N N 582 VAL O O N N 583 VAL CB C N N 584 VAL CG1 C N N 585 VAL CG2 C N N 586 VAL OXT O N N 587 VAL H H N N 588 VAL H2 H N N 589 VAL HA H N N 590 VAL HB H N N 591 VAL HG11 H N N 592 VAL HG12 H N N 593 VAL HG13 H N N 594 VAL HG21 H N N 595 VAL HG22 H N N 596 VAL HG23 H N N 597 VAL HXT H N N 598 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 doub N N 1 6OG P OP2 sing N N 2 6OG P "O5'" sing N N 3 6OG OP2 HOP2 sing N N 4 6OG "O5'" "C5'" sing N N 5 6OG N9 C4 sing Y N 6 6OG N9 C8 sing Y N 7 6OG N9 "C1'" sing N N 8 6OG C4 N3 sing Y N 9 6OG C4 C5 doub Y N 10 6OG N3 C2 doub Y N 11 6OG C2 N2 sing N N 12 6OG C2 N1 sing Y N 13 6OG N2 HN21 sing N N 14 6OG N2 HN22 sing N N 15 6OG N1 C6 doub Y N 16 6OG C6 O6 sing N N 17 6OG C6 C5 sing Y N 18 6OG O6 C sing N N 19 6OG C5 N7 sing Y N 20 6OG N7 C8 doub Y N 21 6OG C8 H8 sing N N 22 6OG "C2'" "C1'" sing N N 23 6OG "C2'" "C3'" sing N N 24 6OG "C2'" "H2'" sing N N 25 6OG "C2'" "H2''" sing N N 26 6OG "C5'" "C4'" sing N N 27 6OG "C5'" "H5'" sing N N 28 6OG "C5'" "H5''" sing N N 29 6OG "C4'" "O4'" sing N N 30 6OG "C4'" "C3'" sing N N 31 6OG "C4'" "H4'" sing N N 32 6OG "O4'" "C1'" sing N N 33 6OG "C1'" "H1'" sing N N 34 6OG "C3'" "O3'" sing N N 35 6OG "C3'" "H3'" sing N N 36 6OG "O3'" "HO3'" sing N N 37 6OG C H1 sing N N 38 6OG C H2 sing N N 39 6OG C H3 sing N N 40 6OG P OP3 sing N N 41 6OG OP3 HOP3 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 ILE N CA sing N N 343 ILE N H sing N N 344 ILE N H2 sing N N 345 ILE CA C sing N N 346 ILE CA CB sing N N 347 ILE CA HA sing N N 348 ILE C O doub N N 349 ILE C OXT sing N N 350 ILE CB CG1 sing N N 351 ILE CB CG2 sing N N 352 ILE CB HB sing N N 353 ILE CG1 CD1 sing N N 354 ILE CG1 HG12 sing N N 355 ILE CG1 HG13 sing N N 356 ILE CG2 HG21 sing N N 357 ILE CG2 HG22 sing N N 358 ILE CG2 HG23 sing N N 359 ILE CD1 HD11 sing N N 360 ILE CD1 HD12 sing N N 361 ILE CD1 HD13 sing N N 362 ILE OXT HXT sing N N 363 LEU N CA sing N N 364 LEU N H sing N N 365 LEU N H2 sing N N 366 LEU CA C sing N N 367 LEU CA CB sing N N 368 LEU CA HA sing N N 369 LEU C O doub N N 370 LEU C OXT sing N N 371 LEU CB CG sing N N 372 LEU CB HB2 sing N N 373 LEU CB HB3 sing N N 374 LEU CG CD1 sing N N 375 LEU CG CD2 sing N N 376 LEU CG HG sing N N 377 LEU CD1 HD11 sing N N 378 LEU CD1 HD12 sing N N 379 LEU CD1 HD13 sing N N 380 LEU CD2 HD21 sing N N 381 LEU CD2 HD22 sing N N 382 LEU CD2 HD23 sing N N 383 LEU OXT HXT sing N N 384 LYS N CA sing N N 385 LYS N H sing N N 386 LYS N H2 sing N N 387 LYS CA C sing N N 388 LYS CA CB sing N N 389 LYS CA HA sing N N 390 LYS C O doub N N 391 LYS C OXT sing N N 392 LYS CB CG sing N N 393 LYS CB HB2 sing N N 394 LYS CB HB3 sing N N 395 LYS CG CD sing N N 396 LYS CG HG2 sing N N 397 LYS CG HG3 sing N N 398 LYS CD CE sing N N 399 LYS CD HD2 sing N N 400 LYS CD HD3 sing N N 401 LYS CE NZ sing N N 402 LYS CE HE2 sing N N 403 LYS CE HE3 sing N N 404 LYS NZ HZ1 sing N N 405 LYS NZ HZ2 sing N N 406 LYS NZ HZ3 sing N N 407 LYS OXT HXT sing N N 408 MET N CA sing N N 409 MET N H sing N N 410 MET N H2 sing N N 411 MET CA C sing N N 412 MET CA CB sing N N 413 MET CA HA sing N N 414 MET C O doub N N 415 MET C OXT sing N N 416 MET CB CG sing N N 417 MET CB HB2 sing N N 418 MET CB HB3 sing N N 419 MET CG SD sing N N 420 MET CG HG2 sing N N 421 MET CG HG3 sing N N 422 MET SD CE sing N N 423 MET CE HE1 sing N N 424 MET CE HE2 sing N N 425 MET CE HE3 sing N N 426 MET OXT HXT sing N N 427 NCO CO N1 sing N N 428 NCO CO N2 sing N N 429 NCO CO N3 sing N N 430 NCO CO N4 sing N N 431 NCO CO N5 sing N N 432 NCO CO N6 sing N N 433 NCO N1 HN11 sing N N 434 NCO N1 HN12 sing N N 435 NCO N1 HN13 sing N N 436 NCO N2 HN21 sing N N 437 NCO N2 HN22 sing N N 438 NCO N2 HN23 sing N N 439 NCO N3 HN31 sing N N 440 NCO N3 HN32 sing N N 441 NCO N3 HN33 sing N N 442 NCO N4 HN41 sing N N 443 NCO N4 HN42 sing N N 444 NCO N4 HN43 sing N N 445 NCO N5 HN51 sing N N 446 NCO N5 HN52 sing N N 447 NCO N5 HN53 sing N N 448 NCO N6 HN61 sing N N 449 NCO N6 HN62 sing N N 450 NCO N6 HN63 sing N N 451 PHE N CA sing N N 452 PHE N H sing N N 453 PHE N H2 sing N N 454 PHE CA C sing N N 455 PHE CA CB sing N N 456 PHE CA HA sing N N 457 PHE C O doub N N 458 PHE C OXT sing N N 459 PHE CB CG sing N N 460 PHE CB HB2 sing N N 461 PHE CB HB3 sing N N 462 PHE CG CD1 doub Y N 463 PHE CG CD2 sing Y N 464 PHE CD1 CE1 sing Y N 465 PHE CD1 HD1 sing N N 466 PHE CD2 CE2 doub Y N 467 PHE CD2 HD2 sing N N 468 PHE CE1 CZ doub Y N 469 PHE CE1 HE1 sing N N 470 PHE CE2 CZ sing Y N 471 PHE CE2 HE2 sing N N 472 PHE CZ HZ sing N N 473 PHE OXT HXT sing N N 474 PRO N CA sing N N 475 PRO N CD sing N N 476 PRO N H sing N N 477 PRO CA C sing N N 478 PRO CA CB sing N N 479 PRO CA HA sing N N 480 PRO C O doub N N 481 PRO C OXT sing N N 482 PRO CB CG sing N N 483 PRO CB HB2 sing N N 484 PRO CB HB3 sing N N 485 PRO CG CD sing N N 486 PRO CG HG2 sing N N 487 PRO CG HG3 sing N N 488 PRO CD HD2 sing N N 489 PRO CD HD3 sing N N 490 PRO OXT HXT sing N N 491 SER N CA sing N N 492 SER N H sing N N 493 SER N H2 sing N N 494 SER CA C sing N N 495 SER CA CB sing N N 496 SER CA HA sing N N 497 SER C O doub N N 498 SER C OXT sing N N 499 SER CB OG sing N N 500 SER CB HB2 sing N N 501 SER CB HB3 sing N N 502 SER OG HG sing N N 503 SER OXT HXT sing N N 504 THR N CA sing N N 505 THR N H sing N N 506 THR N H2 sing N N 507 THR CA C sing N N 508 THR CA CB sing N N 509 THR CA HA sing N N 510 THR C O doub N N 511 THR C OXT sing N N 512 THR CB OG1 sing N N 513 THR CB CG2 sing N N 514 THR CB HB sing N N 515 THR OG1 HG1 sing N N 516 THR CG2 HG21 sing N N 517 THR CG2 HG22 sing N N 518 THR CG2 HG23 sing N N 519 THR OXT HXT sing N N 520 TRP N CA sing N N 521 TRP N H sing N N 522 TRP N H2 sing N N 523 TRP CA C sing N N 524 TRP CA CB sing N N 525 TRP CA HA sing N N 526 TRP C O doub N N 527 TRP C OXT sing N N 528 TRP CB CG sing N N 529 TRP CB HB2 sing N N 530 TRP CB HB3 sing N N 531 TRP CG CD1 doub Y N 532 TRP CG CD2 sing Y N 533 TRP CD1 NE1 sing Y N 534 TRP CD1 HD1 sing N N 535 TRP CD2 CE2 doub Y N 536 TRP CD2 CE3 sing Y N 537 TRP NE1 CE2 sing Y N 538 TRP NE1 HE1 sing N N 539 TRP CE2 CZ2 sing Y N 540 TRP CE3 CZ3 doub Y N 541 TRP CE3 HE3 sing N N 542 TRP CZ2 CH2 doub Y N 543 TRP CZ2 HZ2 sing N N 544 TRP CZ3 CH2 sing Y N 545 TRP CZ3 HZ3 sing N N 546 TRP CH2 HH2 sing N N 547 TRP OXT HXT sing N N 548 TYR N CA sing N N 549 TYR N H sing N N 550 TYR N H2 sing N N 551 TYR CA C sing N N 552 TYR CA CB sing N N 553 TYR CA HA sing N N 554 TYR C O doub N N 555 TYR C OXT sing N N 556 TYR CB CG sing N N 557 TYR CB HB2 sing N N 558 TYR CB HB3 sing N N 559 TYR CG CD1 doub Y N 560 TYR CG CD2 sing Y N 561 TYR CD1 CE1 sing Y N 562 TYR CD1 HD1 sing N N 563 TYR CD2 CE2 doub Y N 564 TYR CD2 HD2 sing N N 565 TYR CE1 CZ doub Y N 566 TYR CE1 HE1 sing N N 567 TYR CE2 CZ sing Y N 568 TYR CE2 HE2 sing N N 569 TYR CZ OH sing N N 570 TYR OH HH sing N N 571 TYR OXT HXT sing N N 572 VAL N CA sing N N 573 VAL N H sing N N 574 VAL N H2 sing N N 575 VAL CA C sing N N 576 VAL CA CB sing N N 577 VAL CA HA sing N N 578 VAL C O doub N N 579 VAL C OXT sing N N 580 VAL CB CG1 sing N N 581 VAL CB CG2 sing N N 582 VAL CB HB sing N N 583 VAL CG1 HG11 sing N N 584 VAL CG1 HG12 sing N N 585 VAL CG1 HG13 sing N N 586 VAL CG2 HG21 sing N N 587 VAL CG2 HG22 sing N N 588 VAL CG2 HG23 sing N N 589 VAL OXT HXT sing N N 590 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GX4 'double helix' 3GX4 'b-form double helix' 3GX4 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 13 1_555 -0.275 -0.607 0.216 -8.426 -9.765 0.168 1 Y_DC202:DG226_Z Y 202 ? Z 226 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 -0.873 -0.617 0.104 -1.644 -8.387 -7.459 2 Y_DC203:DG225_Z Y 203 ? Z 225 ? 19 1 1 B DA 4 1_555 C DT 11 1_555 0.079 -0.124 -0.106 3.155 -9.813 -0.938 3 Y_DA204:DT224_Z Y 204 ? Z 224 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 -0.807 -0.076 -0.124 6.460 -4.403 0.806 4 Y_DT205:DA223_Z Y 205 ? Z 223 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.038 -0.156 -0.161 10.038 1.296 -0.530 5 Y_DG206:DC222_Z Y 206 ? Z 222 ? 19 1 1 B DC 8 1_555 C DG 7 1_555 -0.122 -0.101 -0.098 -2.680 -4.060 0.557 6 Y_DC208:DG220_Z Y 208 ? Z 220 ? 19 1 1 B DT 9 1_555 C DA 6 1_555 -0.515 2.215 -0.160 -2.436 -3.618 -102.414 7 Y_DT209:DA219_Z Y 209 ? Z 219 ? ? ? 1 B DA 10 1_555 C DT 5 1_555 0.249 0.013 -0.021 5.311 -14.740 -4.778 8 Y_DA210:DT218_Z Y 210 ? Z 218 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 0.140 0.055 0.397 -2.132 -16.820 13.053 9 Y_DG211:DC217_Z Y 211 ? Z 217 ? ? 1 1 B DT 12 1_555 C DA 3 1_555 0.032 -0.100 0.024 -6.664 -8.499 13.772 10 Y_DT212:DA216_Z Y 212 ? Z 216 ? 20 1 1 B DA 13 1_555 C DT 2 1_555 0.181 -0.339 -0.146 -1.825 -7.732 -5.237 11 Y_DA213:DT215_Z Y 213 ? Z 215 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 -0.137 -0.848 3.155 1.479 6.187 28.941 -2.885 0.561 2.905 12.195 -2.916 29.618 1 YY_DC202DC203:DG225DG226_ZZ Y 202 ? Z 226 ? Y 203 ? Z 225 ? 1 B DC 3 1_555 C DG 12 1_555 B DA 4 1_555 C DT 11 1_555 0.200 0.681 3.308 2.185 3.772 38.577 0.555 -0.028 3.363 5.688 -3.294 38.814 2 YY_DC203DA204:DT224DG225_ZZ Y 203 ? Z 225 ? Y 204 ? Z 224 ? 1 B DA 4 1_555 C DT 11 1_555 B DT 5 1_555 C DA 10 1_555 0.120 -1.188 3.215 -0.912 5.098 30.283 -3.197 -0.398 2.975 9.669 1.730 30.712 3 YY_DA204DT205:DA223DT224_ZZ Y 204 ? Z 224 ? Y 205 ? Z 223 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 0.978 0.436 3.309 1.626 5.375 36.287 -0.063 -1.325 3.376 8.567 -2.591 36.704 4 YY_DT205DG206:DC222DA223_ZZ Y 205 ? Z 223 ? Y 206 ? Z 222 ? 1 B DG 6 1_555 C DC 9 1_555 B DC 8 1_555 C DG 7 1_555 -0.138 -1.828 6.982 -5.742 31.422 50.461 -5.119 -0.458 5.135 33.327 6.090 59.156 5 YY_DG206DC208:DG220DC222_ZZ Y 206 ? Z 222 ? Y 208 ? Z 220 ? 1 B DC 8 1_555 C DG 7 1_555 B DT 9 1_555 C DA 6 1_555 0.258 -1.571 3.249 3.935 0.404 79.750 -1.235 -0.097 3.250 0.315 -3.067 79.832 6 YY_DC208DT209:DA219DG220_ZZ Y 208 ? Z 220 ? Y 209 ? Z 219 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 -0.496 2.238 3.420 -1.927 -0.616 -11.913 -9.802 -4.952 3.407 2.941 -9.199 -12.083 7 YY_DT209DA210:DT218DA219_ZZ Y 209 ? Z 219 ? Y 210 ? Z 218 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 1.222 -0.535 3.435 -1.363 4.289 34.838 -1.550 -2.235 3.299 7.126 2.265 35.119 8 YY_DA210DG211:DC217DT218_ZZ Y 210 ? Z 218 ? Y 211 ? Z 217 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 0.067 -0.662 3.251 3.927 3.959 32.016 -1.865 0.557 3.134 7.110 -7.054 32.485 9 YY_DG211DT212:DA216DC217_ZZ Y 211 ? Z 217 ? Y 212 ? Z 216 ? 1 B DT 12 1_555 C DA 3 1_555 B DA 13 1_555 C DT 2 1_555 -0.441 -0.275 3.250 -0.062 5.197 30.927 -1.474 0.805 3.163 9.660 0.115 31.350 10 YY_DT212DA213:DT215DA216_ZZ Y 212 ? Z 216 ? Y 213 ? Z 215 ? # _atom_sites.entry_id 3GX4 _atom_sites.fract_transf_matrix[1][1] 0.016743 _atom_sites.fract_transf_matrix[1][2] 0.009666 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004201 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O P S # loop_