data_3GXE # _entry.id 3GXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GXE pdb_00003gxe 10.2210/pdb3gxe/pdb RCSB RCSB052425 ? ? WWPDB D_1000052425 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3EJH _pdbx_database_related.details 'Structure of a high affinity complex between 8-9FnI and collagen' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3GXE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-04-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sladek, B.' 1 'Campbell, I.D.' 2 'Vakonakis, I.' 3 # _citation.id primary _citation.title 'Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 17441 _citation.page_last 17450 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23653354 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.469841 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Erat, M.C.' 1 ? primary 'Sladek, B.' 2 ? primary 'Campbell, I.D.' 3 ? primary 'Vakonakis, I.' 4 ? # _cell.length_a 56.570 _cell.length_b 56.570 _cell.length_c 152.661 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3GXE _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3GXE _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Fibronectin 10891.985 2 ? 'N528Q, R534K' '8-9FnI, UNP residues 516-608' ? 2 polymer syn 'Collagen alpha-1(I) chain' 2280.543 1 ? ? 'ColI.260, UNP residues 254-275' ? 3 polymer syn 'Collagen alpha-1(I) chain' 2280.543 1 ? ? 'ColI.260, UNP residues 254-275' ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 44 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'FN, Cold-insoluble globulin, CIG, Ugl-Y1, Ugl-Y2, Ugl-Y3' 2 'Alpha-1 type I collagen' 3 'Alpha-1 type I collagen' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; ;DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; B,A ? 2 'polypeptide(L)' no yes 'GL(HZP)GTAGL(HZP)GMKGHRGFSGLDGY' GLPGTAGLPGMKGHRGFSGLDGY F ? 3 'polypeptide(L)' no yes 'GL(HYP)GTAGL(HYP)GMKGHRGFSGLDGY' GLPGTAGLPGMKGHRGFSGLDGY E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLN n 1 3 CYS n 1 4 ILE n 1 5 VAL n 1 6 ASP n 1 7 ASP n 1 8 ILE n 1 9 THR n 1 10 TYR n 1 11 ASN n 1 12 VAL n 1 13 GLN n 1 14 ASP n 1 15 THR n 1 16 PHE n 1 17 HIS n 1 18 LYS n 1 19 LYS n 1 20 HIS n 1 21 GLU n 1 22 GLU n 1 23 GLY n 1 24 HIS n 1 25 MET n 1 26 LEU n 1 27 ASN n 1 28 CYS n 1 29 THR n 1 30 CYS n 1 31 PHE n 1 32 GLY n 1 33 GLN n 1 34 GLY n 1 35 ARG n 1 36 GLY n 1 37 ARG n 1 38 TRP n 1 39 LYS n 1 40 CYS n 1 41 ASP n 1 42 PRO n 1 43 VAL n 1 44 ASP n 1 45 GLN n 1 46 CYS n 1 47 GLN n 1 48 ASP n 1 49 SER n 1 50 GLU n 1 51 THR n 1 52 GLY n 1 53 THR n 1 54 PHE n 1 55 TYR n 1 56 GLN n 1 57 ILE n 1 58 GLY n 1 59 ASP n 1 60 SER n 1 61 TRP n 1 62 GLU n 1 63 LYS n 1 64 TYR n 1 65 VAL n 1 66 HIS n 1 67 GLY n 1 68 VAL n 1 69 ARG n 1 70 TYR n 1 71 GLN n 1 72 CYS n 1 73 TYR n 1 74 CYS n 1 75 TYR n 1 76 GLY n 1 77 ARG n 1 78 GLY n 1 79 ILE n 1 80 GLY n 1 81 GLU n 1 82 TRP n 1 83 HIS n 1 84 CYS n 1 85 GLN n 1 86 PRO n 1 87 LEU n 1 88 GLN n 1 89 THR n 1 90 TYR n 1 91 PRO n 1 92 SER n 1 93 SER n 2 1 GLY n 2 2 LEU n 2 3 HZP n 2 4 GLY n 2 5 THR n 2 6 ALA n 2 7 GLY n 2 8 LEU n 2 9 HZP n 2 10 GLY n 2 11 MET n 2 12 LYS n 2 13 GLY n 2 14 HIS n 2 15 ARG n 2 16 GLY n 2 17 PHE n 2 18 SER n 2 19 GLY n 2 20 LEU n 2 21 ASP n 2 22 GLY n 2 23 TYR n 3 1 GLY n 3 2 LEU n 3 3 HYP n 3 4 GLY n 3 5 THR n 3 6 ALA n 3 7 GLY n 3 8 LEU n 3 9 HYP n 3 10 GLY n 3 11 MET n 3 12 LYS n 3 13 GLY n 3 14 HIS n 3 15 ARG n 3 16 GLY n 3 17 PHE n 3 18 SER n 3 19 GLY n 3 20 LEU n 3 21 ASP n 3 22 GLY n 3 23 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene FN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'Gene fragment integrated in the AOX1 locus' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X-33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'Genomic integration' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Standard peptide synthesis' 3 1 sample ? ? ? ? ? 'Standard peptide synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP FINC_HUMAN P02751 1 ;DQCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; 516 ? 2 UNP CO1A1_HUMAN P02452 2 GLPGTAGLPGMKGHRGFSGLDG 254 ? 3 UNP CO1A1_HUMAN P02452 3 GLPGTAGLPGMKGHRGFSGLDG 254 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GXE B 1 ? 93 ? P02751 516 ? 608 ? 516 608 2 2 3GXE F 1 ? 22 ? P02452 254 ? 275 ? 254 275 3 1 3GXE A 1 ? 93 ? P02751 516 ? 608 ? 516 608 4 3 3GXE E 1 ? 22 ? P02452 254 ? 275 ? 254 275 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GXE GLN B 13 ? UNP P02751 ASN 528 'engineered mutation' 528 1 1 3GXE LYS B 19 ? UNP P02751 ARG 534 'engineered mutation' 534 2 2 3GXE TYR F 23 ? UNP P02452 ? ? 'expression tag' 276 3 3 3GXE GLN A 13 ? UNP P02751 ASN 528 'engineered mutation' 528 4 3 3GXE LYS A 19 ? UNP P02751 ARG 534 'engineered mutation' 534 5 4 3GXE TYR E 23 ? UNP P02452 ? ? 'expression tag' 276 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 HZP 'L-peptide linking' n '(4S)-4-hydroxy-L-proline' ? 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GXE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.841 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 54.05 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293.1 _exptl_crystal_grow.pdbx_details '0.1M HEPES pH 7.5, 4.3M NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 293.1K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-03-15 _diffrn_detector.details 'cylindrical grazing incidence mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'silicon monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9762 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_wavelength_list 0.9762 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 # _reflns.entry_id 3GXE _reflns.d_resolution_high 2.558 _reflns.d_resolution_low 46.676 _reflns.number_all 16850 _reflns.number_obs 16804 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 100 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.74 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 8589 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.442 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_Rsym_value 0.442 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 3.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2462 _reflns_shell.percent_possible_all 100 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GXE _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 46.648 _refine.pdbx_ls_sigma_F 0.19 _refine.ls_percent_reflns_obs 99.850 _refine.ls_number_reflns_obs 16796 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.271 _refine.ls_percent_reflns_R_free 7.390 _refine.ls_number_reflns_R_free 1242 _refine.B_iso_mean 57.630 _refine.solvent_model_param_bsol 59.820 _refine.solvent_model_param_ksol 0.381 _refine.aniso_B[1][1] 2.666 _refine.aniso_B[2][2] 2.666 _refine.aniso_B[3][3] -5.332 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.overall_SU_ML 0.990 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.overall_FOM_work_R_set 0.798 _refine.B_iso_max 176.72 _refine.B_iso_min 19.90 _refine.occupancy_max 1.00 _refine.occupancy_min 0.43 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16796 _refine.ls_R_factor_all 0.223 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB Entry 3EJH, Chain A and part of chain E' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details 'R-free at same indices as Mr model' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_isotropic_thermal_model TLS _refine.details 'The SF file contains Friedel pairs under I/F_plus and I/F_minus column.' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1714 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 46.648 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1733 0.003 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2319 0.683 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 221 0.046 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 301 0.002 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 612 12.613 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 1 POSITIONAL A 493 ? ? 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 2 POSITIONAL B 493 0.021 ? 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 1 POSITIONAL E 47 ? ? 3 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 2 POSITIONAL F 47 0.014 ? 4 'X-RAY DIFFRACTION' ? ? ? ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.600 2.704 9 100.000 1744 . 0.319 0.379 . 159 . 1903 1903 . 'X-RAY DIFFRACTION' 2.704 2.827 9 100.000 1742 . 0.281 0.366 . 124 . 1866 1866 . 'X-RAY DIFFRACTION' 2.827 2.977 9 100.000 1725 . 0.269 0.340 . 134 . 1859 1859 . 'X-RAY DIFFRACTION' 2.977 3.163 9 100.000 1713 . 0.234 0.325 . 145 . 1858 1858 . 'X-RAY DIFFRACTION' 3.163 3.407 9 100.000 1717 . 0.214 0.305 . 138 . 1855 1855 . 'X-RAY DIFFRACTION' 3.407 3.750 9 100.000 1749 . 0.187 0.220 . 136 . 1885 1885 . 'X-RAY DIFFRACTION' 3.750 4.292 9 100.000 1710 . 0.173 0.245 . 144 . 1854 1854 . 'X-RAY DIFFRACTION' 4.292 5.406 9 99.000 1713 . 0.174 0.199 . 135 . 1848 1848 . 'X-RAY DIFFRACTION' 5.406 46.655 9 99.000 1741 . 0.207 0.242 . 127 . 1868 1868 . 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.994176 0.074947 0.077439 -0.081142 0.047680 0.995562 0.070922 -0.996047 0.053483 17.556700 4.240730 -49.605099 2 given ? 0.994044 0.052047 0.095744 -0.096477 0.011747 0.995266 0.050676 -0.998576 0.016699 17.817499 4.112780 -49.961201 # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 '(chain A and not (resseq 521:522 or resseq 546:552 or resseq 558 or resseq 578:587 or resseq 592:594 or resseq 598:604)) or chain C' 1 2 '(chain B and not (resseq 521:522 or resseq 546:552 or resseq 558 or resseq 578:587 or resseq 592:594 or resseq 598:604)) or chain D' 2 1 'chain E and resseq 260:267 and not (resname HZP or resname HYP)' 2 2 'chain F and resseq 260:267 and not (resname HZP or resname HYP)' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 C ASP 1 . C LEU 87 . A ASP 516 A LEU 602 ? ? 1 2 1 A ASP 1 . A THR 89 . B ASP 516 B THR 604 ? ? 2 1 1 D GLY 1 . D LEU 20 . E GLY 254 E LEU 273 ? ? 2 2 1 B GLY 7 . B PHE 17 . F GLY 260 F PHE 270 ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 3GXE _struct.title 'Complex of a Low Affinity Collagen Site with the Fibronectin 8-9FnI Domain Pair' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GXE _struct_keywords.text 'protein-peptide complex, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 30 SG ? ? B CYS 518 B CYS 545 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 40 SG ? ? B CYS 543 B CYS 555 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 74 SG ? ? B CYS 561 B CYS 589 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? A CYS 72 SG ? ? ? 1_555 A CYS 84 SG ? ? B CYS 587 B CYS 599 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf5 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 30 SG ? ? A CYS 518 A CYS 545 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf6 disulf ? ? C CYS 28 SG ? ? ? 1_555 C CYS 40 SG ? ? A CYS 543 A CYS 555 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf7 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 74 SG ? ? A CYS 561 A CYS 589 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf8 disulf ? ? C CYS 72 SG ? ? ? 1_555 C CYS 84 SG ? ? A CYS 587 A CYS 599 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? E NAG . C1 ? ? ? 1_555 A ASN 27 ND2 ? ? B NAG 1 B ASN 542 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale2 covale both ? B LEU 8 C ? ? ? 1_555 B HZP 9 N ? ? F LEU 261 F HZP 262 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? B HZP 9 C ? ? ? 1_555 B GLY 10 N ? ? F HZP 262 F GLY 263 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale one ? F NAG . C1 ? ? ? 1_555 C ASN 27 ND2 ? ? A NAG 1 A ASN 542 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale5 covale both ? D LEU 8 C ? ? ? 1_555 D HYP 9 N ? ? E LEU 261 E HYP 262 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? D HYP 9 C ? ? ? 1_555 D GLY 10 N ? ? E HYP 262 E GLY 263 1_555 ? ? ? ? ? ? ? 1.327 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 8 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 2 ? G ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? VAL A 5 ? GLN B 517 VAL B 520 A 2 ILE A 8 ? ASN A 11 ? ILE B 523 ASN B 526 B 1 MET B 11 ? GLY B 13 ? MET F 264 GLY F 266 B 2 ARG A 37 ? PRO A 42 ? ARG B 552 PRO B 557 B 3 MET A 25 ? GLY A 32 ? MET B 540 GLY B 547 B 4 ASP A 14 ? LYS A 19 ? ASP B 529 LYS B 534 B 5 GLY D 10 ? GLY D 13 ? GLY E 263 GLY E 266 B 6 ARG C 37 ? PRO C 42 ? ARG A 552 PRO A 557 B 7 MET C 25 ? GLY C 32 ? MET A 540 GLY A 547 B 8 THR C 15 ? LYS C 19 ? THR A 530 LYS A 534 C 1 GLN A 45 ? GLN A 47 ? GLN B 560 GLN B 562 C 2 PHE A 54 ? GLN A 56 ? PHE B 569 GLN B 571 D 1 SER A 60 ? VAL A 65 ? SER B 575 VAL B 580 D 2 VAL A 68 ? GLY A 76 ? VAL B 583 GLY B 591 D 3 GLU A 81 ? PRO A 86 ? GLU B 596 PRO B 601 E 1 GLN C 2 ? VAL C 5 ? GLN A 517 VAL A 520 E 2 ILE C 8 ? ASN C 11 ? ILE A 523 ASN A 526 F 1 GLN C 45 ? GLN C 47 ? GLN A 560 GLN A 562 F 2 PHE C 54 ? GLN C 56 ? PHE A 569 GLN A 571 G 1 SER C 60 ? VAL C 65 ? SER A 575 VAL A 580 G 2 VAL C 68 ? GLY C 76 ? VAL A 583 GLY A 591 G 3 GLU C 81 ? PRO C 86 ? GLU A 596 PRO A 601 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 3 ? N CYS B 518 O TYR A 10 ? O TYR B 525 B 1 2 O MET B 11 ? O MET F 264 N CYS A 40 ? N CYS B 555 B 2 3 O ASP A 41 ? O ASP B 556 N ASN A 27 ? N ASN B 542 B 3 4 O CYS A 28 ? O CYS B 543 N PHE A 16 ? N PHE B 531 B 4 5 N THR A 15 ? N THR B 530 O GLY D 10 ? O GLY E 263 B 5 6 O MET D 11 ? O MET E 264 N CYS C 40 ? N CYS A 555 B 6 7 O ASP C 41 ? O ASP A 556 N ASN C 27 ? N ASN A 542 B 7 8 O CYS C 28 ? O CYS A 543 N PHE C 16 ? N PHE A 531 C 1 2 N CYS A 46 ? N CYS B 561 O TYR A 55 ? O TYR B 570 D 1 2 N TRP A 61 ? N TRP B 576 O CYS A 72 ? O CYS B 587 D 2 3 N GLN A 71 ? N GLN B 586 O GLN A 85 ? O GLN B 600 E 1 2 N CYS C 3 ? N CYS A 518 O TYR C 10 ? O TYR A 525 F 1 2 N CYS C 46 ? N CYS A 561 O TYR C 55 ? O TYR A 570 G 1 2 N TRP C 61 ? N TRP A 576 O CYS C 72 ? O CYS A 587 G 2 3 N TYR C 75 ? N TYR A 590 O GLU C 81 ? O GLU A 596 # _atom_sites.entry_id 3GXE _atom_sites.fract_transf_matrix[1][1] 0.017677 _atom_sites.fract_transf_matrix[1][2] 0.010206 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020412 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006550 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 516 516 ASP ASP B . n A 1 2 GLN 2 517 517 GLN GLN B . n A 1 3 CYS 3 518 518 CYS CYS B . n A 1 4 ILE 4 519 519 ILE ILE B . n A 1 5 VAL 5 520 520 VAL VAL B . n A 1 6 ASP 6 521 521 ASP ASP B . n A 1 7 ASP 7 522 522 ASP ASP B . n A 1 8 ILE 8 523 523 ILE ILE B . n A 1 9 THR 9 524 524 THR THR B . n A 1 10 TYR 10 525 525 TYR TYR B . n A 1 11 ASN 11 526 526 ASN ASN B . n A 1 12 VAL 12 527 527 VAL VAL B . n A 1 13 GLN 13 528 528 GLN GLN B . n A 1 14 ASP 14 529 529 ASP ASP B . n A 1 15 THR 15 530 530 THR THR B . n A 1 16 PHE 16 531 531 PHE PHE B . n A 1 17 HIS 17 532 532 HIS HIS B . n A 1 18 LYS 18 533 533 LYS LYS B . n A 1 19 LYS 19 534 534 LYS LYS B . n A 1 20 HIS 20 535 535 HIS HIS B . n A 1 21 GLU 21 536 536 GLU GLU B . n A 1 22 GLU 22 537 537 GLU GLU B . n A 1 23 GLY 23 538 538 GLY GLY B . n A 1 24 HIS 24 539 539 HIS HIS B . n A 1 25 MET 25 540 540 MET MET B . n A 1 26 LEU 26 541 541 LEU LEU B . n A 1 27 ASN 27 542 542 ASN ASN B . n A 1 28 CYS 28 543 543 CYS CYS B . n A 1 29 THR 29 544 544 THR THR B . n A 1 30 CYS 30 545 545 CYS CYS B . n A 1 31 PHE 31 546 546 PHE PHE B . n A 1 32 GLY 32 547 547 GLY GLY B . n A 1 33 GLN 33 548 548 GLN GLN B . n A 1 34 GLY 34 549 549 GLY GLY B . n A 1 35 ARG 35 550 550 ARG ARG B . n A 1 36 GLY 36 551 551 GLY GLY B . n A 1 37 ARG 37 552 552 ARG ARG B . n A 1 38 TRP 38 553 553 TRP TRP B . n A 1 39 LYS 39 554 554 LYS LYS B . n A 1 40 CYS 40 555 555 CYS CYS B . n A 1 41 ASP 41 556 556 ASP ASP B . n A 1 42 PRO 42 557 557 PRO PRO B . n A 1 43 VAL 43 558 558 VAL VAL B . n A 1 44 ASP 44 559 559 ASP ASP B . n A 1 45 GLN 45 560 560 GLN GLN B . n A 1 46 CYS 46 561 561 CYS CYS B . n A 1 47 GLN 47 562 562 GLN GLN B . n A 1 48 ASP 48 563 563 ASP ASP B . n A 1 49 SER 49 564 564 SER SER B . n A 1 50 GLU 50 565 565 GLU GLU B . n A 1 51 THR 51 566 566 THR THR B . n A 1 52 GLY 52 567 567 GLY GLY B . n A 1 53 THR 53 568 568 THR THR B . n A 1 54 PHE 54 569 569 PHE PHE B . n A 1 55 TYR 55 570 570 TYR TYR B . n A 1 56 GLN 56 571 571 GLN GLN B . n A 1 57 ILE 57 572 572 ILE ILE B . n A 1 58 GLY 58 573 573 GLY GLY B . n A 1 59 ASP 59 574 574 ASP ASP B . n A 1 60 SER 60 575 575 SER SER B . n A 1 61 TRP 61 576 576 TRP TRP B . n A 1 62 GLU 62 577 577 GLU GLU B . n A 1 63 LYS 63 578 578 LYS LYS B . n A 1 64 TYR 64 579 579 TYR TYR B . n A 1 65 VAL 65 580 580 VAL VAL B . n A 1 66 HIS 66 581 581 HIS HIS B . n A 1 67 GLY 67 582 582 GLY GLY B . n A 1 68 VAL 68 583 583 VAL VAL B . n A 1 69 ARG 69 584 584 ARG ARG B . n A 1 70 TYR 70 585 585 TYR TYR B . n A 1 71 GLN 71 586 586 GLN GLN B . n A 1 72 CYS 72 587 587 CYS CYS B . n A 1 73 TYR 73 588 588 TYR TYR B . n A 1 74 CYS 74 589 589 CYS CYS B . n A 1 75 TYR 75 590 590 TYR TYR B . n A 1 76 GLY 76 591 591 GLY GLY B . n A 1 77 ARG 77 592 592 ARG ARG B . n A 1 78 GLY 78 593 593 GLY GLY B . n A 1 79 ILE 79 594 594 ILE ILE B . n A 1 80 GLY 80 595 595 GLY GLY B . n A 1 81 GLU 81 596 596 GLU GLU B . n A 1 82 TRP 82 597 597 TRP TRP B . n A 1 83 HIS 83 598 598 HIS HIS B . n A 1 84 CYS 84 599 599 CYS CYS B . n A 1 85 GLN 85 600 600 GLN GLN B . n A 1 86 PRO 86 601 601 PRO PRO B . n A 1 87 LEU 87 602 602 LEU LEU B . n A 1 88 GLN 88 603 603 GLN GLN B . n A 1 89 THR 89 604 604 THR THR B . n A 1 90 TYR 90 605 ? ? ? B . n A 1 91 PRO 91 606 ? ? ? B . n A 1 92 SER 92 607 ? ? ? B . n A 1 93 SER 93 608 ? ? ? B . n B 2 1 GLY 1 254 ? ? ? F . n B 2 2 LEU 2 255 ? ? ? F . n B 2 3 HZP 3 256 ? ? ? F . n B 2 4 GLY 4 257 ? ? ? F . n B 2 5 THR 5 258 ? ? ? F . n B 2 6 ALA 6 259 ? ? ? F . n B 2 7 GLY 7 260 260 GLY GLY F . n B 2 8 LEU 8 261 261 LEU LEU F . n B 2 9 HZP 9 262 262 HZP HYP F . n B 2 10 GLY 10 263 263 GLY GLY F . n B 2 11 MET 11 264 264 MET MET F . n B 2 12 LYS 12 265 265 LYS LYS F . n B 2 13 GLY 13 266 266 GLY GLY F . n B 2 14 HIS 14 267 267 HIS HIS F . n B 2 15 ARG 15 268 268 ARG ARG F . n B 2 16 GLY 16 269 269 GLY GLY F . n B 2 17 PHE 17 270 270 PHE PHE F . n B 2 18 SER 18 271 ? ? ? F . n B 2 19 GLY 19 272 ? ? ? F . n B 2 20 LEU 20 273 ? ? ? F . n B 2 21 ASP 21 274 ? ? ? F . n B 2 22 GLY 22 275 ? ? ? F . n B 2 23 TYR 23 276 ? ? ? F . n C 1 1 ASP 1 516 516 ASP ASP A . n C 1 2 GLN 2 517 517 GLN GLN A . n C 1 3 CYS 3 518 518 CYS CYS A . n C 1 4 ILE 4 519 519 ILE ILE A . n C 1 5 VAL 5 520 520 VAL VAL A . n C 1 6 ASP 6 521 521 ASP ASP A . n C 1 7 ASP 7 522 522 ASP ASP A . n C 1 8 ILE 8 523 523 ILE ILE A . n C 1 9 THR 9 524 524 THR THR A . n C 1 10 TYR 10 525 525 TYR TYR A . n C 1 11 ASN 11 526 526 ASN ASN A . n C 1 12 VAL 12 527 527 VAL VAL A . n C 1 13 GLN 13 528 528 GLN GLN A . n C 1 14 ASP 14 529 529 ASP ASP A . n C 1 15 THR 15 530 530 THR THR A . n C 1 16 PHE 16 531 531 PHE PHE A . n C 1 17 HIS 17 532 532 HIS HIS A . n C 1 18 LYS 18 533 533 LYS LYS A . n C 1 19 LYS 19 534 534 LYS LYS A . n C 1 20 HIS 20 535 535 HIS HIS A . n C 1 21 GLU 21 536 536 GLU GLU A . n C 1 22 GLU 22 537 537 GLU GLU A . n C 1 23 GLY 23 538 538 GLY GLY A . n C 1 24 HIS 24 539 539 HIS HIS A . n C 1 25 MET 25 540 540 MET MET A . n C 1 26 LEU 26 541 541 LEU LEU A . n C 1 27 ASN 27 542 542 ASN ASN A . n C 1 28 CYS 28 543 543 CYS CYS A . n C 1 29 THR 29 544 544 THR THR A . n C 1 30 CYS 30 545 545 CYS CYS A . n C 1 31 PHE 31 546 546 PHE PHE A . n C 1 32 GLY 32 547 547 GLY GLY A . n C 1 33 GLN 33 548 548 GLN GLN A . n C 1 34 GLY 34 549 549 GLY GLY A . n C 1 35 ARG 35 550 550 ARG ARG A . n C 1 36 GLY 36 551 551 GLY GLY A . n C 1 37 ARG 37 552 552 ARG ARG A . n C 1 38 TRP 38 553 553 TRP TRP A . n C 1 39 LYS 39 554 554 LYS LYS A . n C 1 40 CYS 40 555 555 CYS CYS A . n C 1 41 ASP 41 556 556 ASP ASP A . n C 1 42 PRO 42 557 557 PRO PRO A . n C 1 43 VAL 43 558 558 VAL VAL A . n C 1 44 ASP 44 559 559 ASP ASP A . n C 1 45 GLN 45 560 560 GLN GLN A . n C 1 46 CYS 46 561 561 CYS CYS A . n C 1 47 GLN 47 562 562 GLN GLN A . n C 1 48 ASP 48 563 563 ASP ASP A . n C 1 49 SER 49 564 564 SER SER A . n C 1 50 GLU 50 565 565 GLU GLU A . n C 1 51 THR 51 566 566 THR THR A . n C 1 52 GLY 52 567 567 GLY GLY A . n C 1 53 THR 53 568 568 THR THR A . n C 1 54 PHE 54 569 569 PHE PHE A . n C 1 55 TYR 55 570 570 TYR TYR A . n C 1 56 GLN 56 571 571 GLN GLN A . n C 1 57 ILE 57 572 572 ILE ILE A . n C 1 58 GLY 58 573 573 GLY GLY A . n C 1 59 ASP 59 574 574 ASP ASP A . n C 1 60 SER 60 575 575 SER SER A . n C 1 61 TRP 61 576 576 TRP TRP A . n C 1 62 GLU 62 577 577 GLU GLU A . n C 1 63 LYS 63 578 578 LYS LYS A . n C 1 64 TYR 64 579 579 TYR TYR A . n C 1 65 VAL 65 580 580 VAL VAL A . n C 1 66 HIS 66 581 581 HIS HIS A . n C 1 67 GLY 67 582 582 GLY GLY A . n C 1 68 VAL 68 583 583 VAL VAL A . n C 1 69 ARG 69 584 584 ARG ARG A . n C 1 70 TYR 70 585 585 TYR TYR A . n C 1 71 GLN 71 586 586 GLN GLN A . n C 1 72 CYS 72 587 587 CYS CYS A . n C 1 73 TYR 73 588 588 TYR TYR A . n C 1 74 CYS 74 589 589 CYS CYS A . n C 1 75 TYR 75 590 590 TYR TYR A . n C 1 76 GLY 76 591 591 GLY GLY A . n C 1 77 ARG 77 592 592 ARG ARG A . n C 1 78 GLY 78 593 593 GLY GLY A . n C 1 79 ILE 79 594 594 ILE ILE A . n C 1 80 GLY 80 595 595 GLY GLY A . n C 1 81 GLU 81 596 596 GLU GLU A . n C 1 82 TRP 82 597 597 TRP TRP A . n C 1 83 HIS 83 598 598 HIS HIS A . n C 1 84 CYS 84 599 599 CYS CYS A . n C 1 85 GLN 85 600 600 GLN GLN A . n C 1 86 PRO 86 601 601 PRO PRO A . n C 1 87 LEU 87 602 602 LEU LEU A . n C 1 88 GLN 88 603 ? ? ? A . n C 1 89 THR 89 604 ? ? ? A . n C 1 90 TYR 90 605 ? ? ? A . n C 1 91 PRO 91 606 ? ? ? A . n C 1 92 SER 92 607 ? ? ? A . n C 1 93 SER 93 608 ? ? ? A . n D 3 1 GLY 1 254 254 GLY GLY E . n D 3 2 LEU 2 255 255 LEU LEU E . n D 3 3 HYP 3 256 ? ? ? E . n D 3 4 GLY 4 257 ? ? ? E . n D 3 5 THR 5 258 ? ? ? E . n D 3 6 ALA 6 259 ? ? ? E . n D 3 7 GLY 7 260 260 GLY GLY E . n D 3 8 LEU 8 261 261 LEU LEU E . n D 3 9 HYP 9 262 262 HYP HXP E . n D 3 10 GLY 10 263 263 GLY GLY E . n D 3 11 MET 11 264 264 MET MET E . n D 3 12 LYS 12 265 265 LYS LYS E . n D 3 13 GLY 13 266 266 GLY GLY E . n D 3 14 HIS 14 267 267 HIS HIS E . n D 3 15 ARG 15 268 268 ARG ARG E . n D 3 16 GLY 16 269 269 GLY GLY E . n D 3 17 PHE 17 270 270 PHE PHE E . n D 3 18 SER 18 271 271 SER SER E . n D 3 19 GLY 19 272 272 GLY GLY E . n D 3 20 LEU 20 273 273 LEU LEU E . n D 3 21 ASP 21 274 ? ? ? E . n D 3 22 GLY 22 275 ? ? ? E . n D 3 23 TYR 23 276 ? ? ? E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG 1 1 1 NAG NAG B . F 4 NAG 1 1 1 NAG NAG A . G 5 GOL 1 609 1 GOL GOL A . H 6 HOH 1 2 2 HOH HOH B . H 6 HOH 2 3 3 HOH HOH B . H 6 HOH 3 4 4 HOH HOH B . H 6 HOH 4 5 5 HOH HOH B . H 6 HOH 5 6 6 HOH HOH B . H 6 HOH 6 8 8 HOH HOH B . H 6 HOH 7 16 16 HOH HOH B . H 6 HOH 8 17 17 HOH HOH B . H 6 HOH 9 25 25 HOH HOH B . H 6 HOH 10 30 30 HOH HOH B . H 6 HOH 11 31 31 HOH HOH B . H 6 HOH 12 41 41 HOH HOH B . H 6 HOH 13 42 42 HOH HOH B . H 6 HOH 14 54 54 HOH HOH B . H 6 HOH 15 55 55 HOH HOH B . H 6 HOH 16 61 61 HOH HOH B . H 6 HOH 17 609 1 HOH HOH B . H 6 HOH 18 610 1 HOH HOH B . H 6 HOH 19 611 3 HOH HOH B . H 6 HOH 20 612 5 HOH HOH B . H 6 HOH 21 613 6 HOH HOH B . I 6 HOH 1 2 2 HOH HOH F . I 6 HOH 2 23 23 HOH HOH F . J 6 HOH 1 2 2 HOH HOH A . J 6 HOH 2 3 3 HOH HOH A . J 6 HOH 3 4 4 HOH HOH A . J 6 HOH 4 7 7 HOH HOH A . J 6 HOH 5 8 8 HOH HOH A . J 6 HOH 6 10 10 HOH HOH A . J 6 HOH 7 14 14 HOH HOH A . J 6 HOH 8 18 18 HOH HOH A . J 6 HOH 9 21 21 HOH HOH A . J 6 HOH 10 22 22 HOH HOH A . J 6 HOH 11 33 33 HOH HOH A . J 6 HOH 12 35 35 HOH HOH A . J 6 HOH 13 38 38 HOH HOH A . J 6 HOH 14 49 49 HOH HOH A . J 6 HOH 15 60 60 HOH HOH A . J 6 HOH 16 610 7 HOH HOH A . J 6 HOH 17 611 10 HOH HOH A . J 6 HOH 18 612 1 HOH HOH A . K 6 HOH 1 11 11 HOH HOH E . K 6 HOH 2 26 26 HOH HOH E . K 6 HOH 3 47 47 HOH HOH E . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 27 B ASN 542 ? ASN 'GLYCOSYLATION SITE' 2 C ASN 27 A ASN 542 ? ASN 'GLYCOSYLATION SITE' 3 B HZP 9 F HZP 262 ? PRO '(4S)-4-HYDROXY-L-PROLINE' 4 D HYP 9 E HYP 262 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,H,I 2 1 C,D,F,G,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 612 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-05-15 4 'Structure model' 1 3 2014-01-29 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2021-11-10 7 'Structure model' 1 6 2023-11-01 8 'Structure model' 1 7 2023-11-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Structure summary' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Refinement description' 13 8 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp 2 5 'Structure model' entity 3 5 'Structure model' pdbx_chem_comp_identifier 4 5 'Structure model' pdbx_entity_nonpoly 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site 8 5 'Structure model' struct_site_gen 9 6 'Structure model' chem_comp 10 6 'Structure model' database_2 11 6 'Structure model' struct_ref_seq_dif 12 7 'Structure model' chem_comp_atom 13 7 'Structure model' chem_comp_bond 14 7 'Structure model' pdbx_initial_refinement_model 15 7 'Structure model' struct_ncs_dom_lim 16 8 'Structure model' chem_comp_atom 17 8 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.name' 2 5 'Structure model' '_chem_comp.type' 3 5 'Structure model' '_entity.pdbx_description' 4 5 'Structure model' '_pdbx_entity_nonpoly.name' 5 5 'Structure model' '_struct_conn.pdbx_dist_value' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_conn.pdbx_role' 8 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 5 'Structure model' '_struct_ref_seq_dif.details' 23 6 'Structure model' '_chem_comp.pdbx_synonyms' 24 6 'Structure model' '_database_2.pdbx_DOI' 25 6 'Structure model' '_database_2.pdbx_database_accession' 26 6 'Structure model' '_struct_ref_seq_dif.details' 27 7 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 28 7 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 29 7 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 30 7 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 31 7 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 32 7 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 33 7 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 34 7 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 35 8 'Structure model' '_chem_comp_atom.atom_id' 36 8 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 43.8050 -26.9047 -33.7150 0.1501 0.3521 0.1267 -0.1031 0.0659 -0.0265 1.1606 3.8604 0.8335 -0.2325 0.4583 -1.6462 -0.1904 0.2892 -0.1110 -0.0658 0.0444 -0.3259 -0.3804 0.2280 -0.1721 'X-RAY DIFFRACTION' 2 ? refined 56.2241 -2.6138 -34.7014 0.2891 0.1450 0.2818 -0.0706 -0.0984 0.1250 1.1604 4.7072 2.5396 2.1081 -0.6618 -2.3505 0.0248 -0.3152 0.2441 -0.2539 -0.2819 -1.1382 0.4670 0.0099 -0.1113 'X-RAY DIFFRACTION' 3 ? refined 29.8398 -15.1919 -27.8990 0.1511 0.3554 0.1086 0.0414 -0.0202 0.0930 2.7410 2.8482 2.7591 -0.2616 -2.1681 1.9239 0.0621 -0.1413 0.1046 0.4517 -0.1216 -0.2182 -0.2889 -0.4857 -0.1000 'X-RAY DIFFRACTION' 4 ? refined 40.8892 -11.8395 -2.7806 0.1417 0.1102 0.1097 0.0511 -0.0232 0.0058 1.4850 1.0131 2.3307 -0.8987 -0.1665 -0.4550 -0.0351 -0.1240 0.1044 0.0617 0.0666 -0.0839 -0.0125 0.0785 -0.3280 'X-RAY DIFFRACTION' 5 ? refined 36.3308 -21.5332 -33.9141 0.0785 0.2879 0.1066 -0.0009 0.0140 -0.0889 0.5001 5.3168 0.8021 1.4546 0.2726 1.2567 0.0669 -0.3619 0.1649 0.1660 -0.0924 -0.3670 -0.5742 -0.1873 -0.4002 'X-RAY DIFFRACTION' 6 ? refined 21.9467 -15.9345 -25.3542 0.2006 0.4100 0.1810 0.0067 0.0749 0.1432 2.2788 1.9203 2.9604 0.8924 -1.1810 -0.4109 -0.1569 0.4693 0.0710 0.1562 -0.1555 -0.2809 -0.3942 0.0236 -0.8629 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resseq 516:558) or (chain A and resseq 1)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain A and resseq 559:602' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain B and resseq 516:558) or (chain B and resseq 1)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'chain B and resseq 559:604' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'chain E' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'chain F' 'X-RAY DIFFRACTION' # _pdbx_phasing_MR.entry_id 3GXE _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 39.270 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.800 _pdbx_phasing_MR.d_res_low_rotation 49.460 _pdbx_phasing_MR.d_res_high_translation 2.800 _pdbx_phasing_MR.d_res_low_translation 49.460 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 2009_02_15_2320_3 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE B 594 ? ? -142.52 24.78 2 1 ASP A 521 ? ? 61.23 -128.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B TYR 605 ? A TYR 90 2 1 Y 1 B PRO 606 ? A PRO 91 3 1 Y 1 B SER 607 ? A SER 92 4 1 Y 1 B SER 608 ? A SER 93 5 1 Y 1 F GLY 254 ? B GLY 1 6 1 Y 1 F LEU 255 ? B LEU 2 7 1 Y 1 F HZP 256 ? B HZP 3 8 1 Y 1 F GLY 257 ? B GLY 4 9 1 Y 1 F THR 258 ? B THR 5 10 1 Y 1 F ALA 259 ? B ALA 6 11 1 Y 1 F SER 271 ? B SER 18 12 1 Y 1 F GLY 272 ? B GLY 19 13 1 Y 1 F LEU 273 ? B LEU 20 14 1 Y 1 F ASP 274 ? B ASP 21 15 1 Y 1 F GLY 275 ? B GLY 22 16 1 Y 1 F TYR 276 ? B TYR 23 17 1 Y 1 A GLN 603 ? C GLN 88 18 1 Y 1 A THR 604 ? C THR 89 19 1 Y 1 A TYR 605 ? C TYR 90 20 1 Y 1 A PRO 606 ? C PRO 91 21 1 Y 1 A SER 607 ? C SER 92 22 1 Y 1 A SER 608 ? C SER 93 23 1 Y 1 E HYP 256 ? D HYP 3 24 1 Y 1 E GLY 257 ? D GLY 4 25 1 Y 1 E THR 258 ? D THR 5 26 1 Y 1 E ALA 259 ? D ALA 6 27 1 Y 1 E ASP 274 ? D ASP 21 28 1 Y 1 E GLY 275 ? D GLY 22 29 1 Y 1 E TYR 276 ? D TYR 23 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 HYP N N N N 175 HYP CA C N S 176 HYP C C N N 177 HYP O O N N 178 HYP CB C N N 179 HYP CG C N R 180 HYP CD C N N 181 HYP OD1 O N N 182 HYP OXT O N N 183 HYP H H N N 184 HYP HA H N N 185 HYP HB2 H N N 186 HYP HB3 H N N 187 HYP HG H N N 188 HYP HD22 H N N 189 HYP HD23 H N N 190 HYP HD1 H N N 191 HYP HXT H N N 192 HZP OXT O N N 193 HZP N N N N 194 HZP CA C N S 195 HZP C C N N 196 HZP O O N N 197 HZP CB C N N 198 HZP CG C N S 199 HZP CD C N N 200 HZP OD1 O N N 201 HZP H H N N 202 HZP HA H N N 203 HZP HXT H N N 204 HZP HB H N N 205 HZP HBA H N N 206 HZP HG H N N 207 HZP HD H N N 208 HZP HDA H N N 209 HZP HOD1 H N N 210 ILE N N N N 211 ILE CA C N S 212 ILE C C N N 213 ILE O O N N 214 ILE CB C N S 215 ILE CG1 C N N 216 ILE CG2 C N N 217 ILE CD1 C N N 218 ILE OXT O N N 219 ILE H H N N 220 ILE H2 H N N 221 ILE HA H N N 222 ILE HB H N N 223 ILE HG12 H N N 224 ILE HG13 H N N 225 ILE HG21 H N N 226 ILE HG22 H N N 227 ILE HG23 H N N 228 ILE HD11 H N N 229 ILE HD12 H N N 230 ILE HD13 H N N 231 ILE HXT H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 NAG C1 C N R 300 NAG C2 C N R 301 NAG C3 C N R 302 NAG C4 C N S 303 NAG C5 C N R 304 NAG C6 C N N 305 NAG C7 C N N 306 NAG C8 C N N 307 NAG N2 N N N 308 NAG O1 O N N 309 NAG O3 O N N 310 NAG O4 O N N 311 NAG O5 O N N 312 NAG O6 O N N 313 NAG O7 O N N 314 NAG H1 H N N 315 NAG H2 H N N 316 NAG H3 H N N 317 NAG H4 H N N 318 NAG H5 H N N 319 NAG H61 H N N 320 NAG H62 H N N 321 NAG H81 H N N 322 NAG H82 H N N 323 NAG H83 H N N 324 NAG HN2 H N N 325 NAG HO1 H N N 326 NAG HO3 H N N 327 NAG HO4 H N N 328 NAG HO6 H N N 329 PHE N N N N 330 PHE CA C N S 331 PHE C C N N 332 PHE O O N N 333 PHE CB C N N 334 PHE CG C Y N 335 PHE CD1 C Y N 336 PHE CD2 C Y N 337 PHE CE1 C Y N 338 PHE CE2 C Y N 339 PHE CZ C Y N 340 PHE OXT O N N 341 PHE H H N N 342 PHE H2 H N N 343 PHE HA H N N 344 PHE HB2 H N N 345 PHE HB3 H N N 346 PHE HD1 H N N 347 PHE HD2 H N N 348 PHE HE1 H N N 349 PHE HE2 H N N 350 PHE HZ H N N 351 PHE HXT H N N 352 PRO N N N N 353 PRO CA C N S 354 PRO C C N N 355 PRO O O N N 356 PRO CB C N N 357 PRO CG C N N 358 PRO CD C N N 359 PRO OXT O N N 360 PRO H H N N 361 PRO HA H N N 362 PRO HB2 H N N 363 PRO HB3 H N N 364 PRO HG2 H N N 365 PRO HG3 H N N 366 PRO HD2 H N N 367 PRO HD3 H N N 368 PRO HXT H N N 369 SER N N N N 370 SER CA C N S 371 SER C C N N 372 SER O O N N 373 SER CB C N N 374 SER OG O N N 375 SER OXT O N N 376 SER H H N N 377 SER H2 H N N 378 SER HA H N N 379 SER HB2 H N N 380 SER HB3 H N N 381 SER HG H N N 382 SER HXT H N N 383 THR N N N N 384 THR CA C N S 385 THR C C N N 386 THR O O N N 387 THR CB C N R 388 THR OG1 O N N 389 THR CG2 C N N 390 THR OXT O N N 391 THR H H N N 392 THR H2 H N N 393 THR HA H N N 394 THR HB H N N 395 THR HG1 H N N 396 THR HG21 H N N 397 THR HG22 H N N 398 THR HG23 H N N 399 THR HXT H N N 400 TRP N N N N 401 TRP CA C N S 402 TRP C C N N 403 TRP O O N N 404 TRP CB C N N 405 TRP CG C Y N 406 TRP CD1 C Y N 407 TRP CD2 C Y N 408 TRP NE1 N Y N 409 TRP CE2 C Y N 410 TRP CE3 C Y N 411 TRP CZ2 C Y N 412 TRP CZ3 C Y N 413 TRP CH2 C Y N 414 TRP OXT O N N 415 TRP H H N N 416 TRP H2 H N N 417 TRP HA H N N 418 TRP HB2 H N N 419 TRP HB3 H N N 420 TRP HD1 H N N 421 TRP HE1 H N N 422 TRP HE3 H N N 423 TRP HZ2 H N N 424 TRP HZ3 H N N 425 TRP HH2 H N N 426 TRP HXT H N N 427 TYR N N N N 428 TYR CA C N S 429 TYR C C N N 430 TYR O O N N 431 TYR CB C N N 432 TYR CG C Y N 433 TYR CD1 C Y N 434 TYR CD2 C Y N 435 TYR CE1 C Y N 436 TYR CE2 C Y N 437 TYR CZ C Y N 438 TYR OH O N N 439 TYR OXT O N N 440 TYR H H N N 441 TYR H2 H N N 442 TYR HA H N N 443 TYR HB2 H N N 444 TYR HB3 H N N 445 TYR HD1 H N N 446 TYR HD2 H N N 447 TYR HE1 H N N 448 TYR HE2 H N N 449 TYR HH H N N 450 TYR HXT H N N 451 VAL N N N N 452 VAL CA C N S 453 VAL C C N N 454 VAL O O N N 455 VAL CB C N N 456 VAL CG1 C N N 457 VAL CG2 C N N 458 VAL OXT O N N 459 VAL H H N N 460 VAL H2 H N N 461 VAL HA H N N 462 VAL HB H N N 463 VAL HG11 H N N 464 VAL HG12 H N N 465 VAL HG13 H N N 466 VAL HG21 H N N 467 VAL HG22 H N N 468 VAL HG23 H N N 469 VAL HXT H N N 470 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 HYP N CA sing N N 165 HYP N CD sing N N 166 HYP N H sing N N 167 HYP CA C sing N N 168 HYP CA CB sing N N 169 HYP CA HA sing N N 170 HYP C O doub N N 171 HYP C OXT sing N N 172 HYP CB CG sing N N 173 HYP CB HB2 sing N N 174 HYP CB HB3 sing N N 175 HYP CG CD sing N N 176 HYP CG OD1 sing N N 177 HYP CG HG sing N N 178 HYP CD HD22 sing N N 179 HYP CD HD23 sing N N 180 HYP OD1 HD1 sing N N 181 HYP OXT HXT sing N N 182 HZP OXT C sing N N 183 HZP CA N sing N N 184 HZP N CD sing N N 185 HZP N H sing N N 186 HZP C CA sing N N 187 HZP CB CA sing N N 188 HZP CA HA sing N N 189 HZP C O doub N N 190 HZP OXT HXT sing N N 191 HZP CB CG sing N N 192 HZP CB HB sing N N 193 HZP CB HBA sing N N 194 HZP OD1 CG sing N N 195 HZP CG CD sing N N 196 HZP CG HG sing N N 197 HZP CD HD sing N N 198 HZP CD HDA sing N N 199 HZP OD1 HOD1 sing N N 200 ILE N CA sing N N 201 ILE N H sing N N 202 ILE N H2 sing N N 203 ILE CA C sing N N 204 ILE CA CB sing N N 205 ILE CA HA sing N N 206 ILE C O doub N N 207 ILE C OXT sing N N 208 ILE CB CG1 sing N N 209 ILE CB CG2 sing N N 210 ILE CB HB sing N N 211 ILE CG1 CD1 sing N N 212 ILE CG1 HG12 sing N N 213 ILE CG1 HG13 sing N N 214 ILE CG2 HG21 sing N N 215 ILE CG2 HG22 sing N N 216 ILE CG2 HG23 sing N N 217 ILE CD1 HD11 sing N N 218 ILE CD1 HD12 sing N N 219 ILE CD1 HD13 sing N N 220 ILE OXT HXT sing N N 221 LEU N CA sing N N 222 LEU N H sing N N 223 LEU N H2 sing N N 224 LEU CA C sing N N 225 LEU CA CB sing N N 226 LEU CA HA sing N N 227 LEU C O doub N N 228 LEU C OXT sing N N 229 LEU CB CG sing N N 230 LEU CB HB2 sing N N 231 LEU CB HB3 sing N N 232 LEU CG CD1 sing N N 233 LEU CG CD2 sing N N 234 LEU CG HG sing N N 235 LEU CD1 HD11 sing N N 236 LEU CD1 HD12 sing N N 237 LEU CD1 HD13 sing N N 238 LEU CD2 HD21 sing N N 239 LEU CD2 HD22 sing N N 240 LEU CD2 HD23 sing N N 241 LEU OXT HXT sing N N 242 LYS N CA sing N N 243 LYS N H sing N N 244 LYS N H2 sing N N 245 LYS CA C sing N N 246 LYS CA CB sing N N 247 LYS CA HA sing N N 248 LYS C O doub N N 249 LYS C OXT sing N N 250 LYS CB CG sing N N 251 LYS CB HB2 sing N N 252 LYS CB HB3 sing N N 253 LYS CG CD sing N N 254 LYS CG HG2 sing N N 255 LYS CG HG3 sing N N 256 LYS CD CE sing N N 257 LYS CD HD2 sing N N 258 LYS CD HD3 sing N N 259 LYS CE NZ sing N N 260 LYS CE HE2 sing N N 261 LYS CE HE3 sing N N 262 LYS NZ HZ1 sing N N 263 LYS NZ HZ2 sing N N 264 LYS NZ HZ3 sing N N 265 LYS OXT HXT sing N N 266 MET N CA sing N N 267 MET N H sing N N 268 MET N H2 sing N N 269 MET CA C sing N N 270 MET CA CB sing N N 271 MET CA HA sing N N 272 MET C O doub N N 273 MET C OXT sing N N 274 MET CB CG sing N N 275 MET CB HB2 sing N N 276 MET CB HB3 sing N N 277 MET CG SD sing N N 278 MET CG HG2 sing N N 279 MET CG HG3 sing N N 280 MET SD CE sing N N 281 MET CE HE1 sing N N 282 MET CE HE2 sing N N 283 MET CE HE3 sing N N 284 MET OXT HXT sing N N 285 NAG C1 C2 sing N N 286 NAG C1 O1 sing N N 287 NAG C1 O5 sing N N 288 NAG C1 H1 sing N N 289 NAG C2 C3 sing N N 290 NAG C2 N2 sing N N 291 NAG C2 H2 sing N N 292 NAG C3 C4 sing N N 293 NAG C3 O3 sing N N 294 NAG C3 H3 sing N N 295 NAG C4 C5 sing N N 296 NAG C4 O4 sing N N 297 NAG C4 H4 sing N N 298 NAG C5 C6 sing N N 299 NAG C5 O5 sing N N 300 NAG C5 H5 sing N N 301 NAG C6 O6 sing N N 302 NAG C6 H61 sing N N 303 NAG C6 H62 sing N N 304 NAG C7 C8 sing N N 305 NAG C7 N2 sing N N 306 NAG C7 O7 doub N N 307 NAG C8 H81 sing N N 308 NAG C8 H82 sing N N 309 NAG C8 H83 sing N N 310 NAG N2 HN2 sing N N 311 NAG O1 HO1 sing N N 312 NAG O3 HO3 sing N N 313 NAG O4 HO4 sing N N 314 NAG O6 HO6 sing N N 315 PHE N CA sing N N 316 PHE N H sing N N 317 PHE N H2 sing N N 318 PHE CA C sing N N 319 PHE CA CB sing N N 320 PHE CA HA sing N N 321 PHE C O doub N N 322 PHE C OXT sing N N 323 PHE CB CG sing N N 324 PHE CB HB2 sing N N 325 PHE CB HB3 sing N N 326 PHE CG CD1 doub Y N 327 PHE CG CD2 sing Y N 328 PHE CD1 CE1 sing Y N 329 PHE CD1 HD1 sing N N 330 PHE CD2 CE2 doub Y N 331 PHE CD2 HD2 sing N N 332 PHE CE1 CZ doub Y N 333 PHE CE1 HE1 sing N N 334 PHE CE2 CZ sing Y N 335 PHE CE2 HE2 sing N N 336 PHE CZ HZ sing N N 337 PHE OXT HXT sing N N 338 PRO N CA sing N N 339 PRO N CD sing N N 340 PRO N H sing N N 341 PRO CA C sing N N 342 PRO CA CB sing N N 343 PRO CA HA sing N N 344 PRO C O doub N N 345 PRO C OXT sing N N 346 PRO CB CG sing N N 347 PRO CB HB2 sing N N 348 PRO CB HB3 sing N N 349 PRO CG CD sing N N 350 PRO CG HG2 sing N N 351 PRO CG HG3 sing N N 352 PRO CD HD2 sing N N 353 PRO CD HD3 sing N N 354 PRO OXT HXT sing N N 355 SER N CA sing N N 356 SER N H sing N N 357 SER N H2 sing N N 358 SER CA C sing N N 359 SER CA CB sing N N 360 SER CA HA sing N N 361 SER C O doub N N 362 SER C OXT sing N N 363 SER CB OG sing N N 364 SER CB HB2 sing N N 365 SER CB HB3 sing N N 366 SER OG HG sing N N 367 SER OXT HXT sing N N 368 THR N CA sing N N 369 THR N H sing N N 370 THR N H2 sing N N 371 THR CA C sing N N 372 THR CA CB sing N N 373 THR CA HA sing N N 374 THR C O doub N N 375 THR C OXT sing N N 376 THR CB OG1 sing N N 377 THR CB CG2 sing N N 378 THR CB HB sing N N 379 THR OG1 HG1 sing N N 380 THR CG2 HG21 sing N N 381 THR CG2 HG22 sing N N 382 THR CG2 HG23 sing N N 383 THR OXT HXT sing N N 384 TRP N CA sing N N 385 TRP N H sing N N 386 TRP N H2 sing N N 387 TRP CA C sing N N 388 TRP CA CB sing N N 389 TRP CA HA sing N N 390 TRP C O doub N N 391 TRP C OXT sing N N 392 TRP CB CG sing N N 393 TRP CB HB2 sing N N 394 TRP CB HB3 sing N N 395 TRP CG CD1 doub Y N 396 TRP CG CD2 sing Y N 397 TRP CD1 NE1 sing Y N 398 TRP CD1 HD1 sing N N 399 TRP CD2 CE2 doub Y N 400 TRP CD2 CE3 sing Y N 401 TRP NE1 CE2 sing Y N 402 TRP NE1 HE1 sing N N 403 TRP CE2 CZ2 sing Y N 404 TRP CE3 CZ3 doub Y N 405 TRP CE3 HE3 sing N N 406 TRP CZ2 CH2 doub Y N 407 TRP CZ2 HZ2 sing N N 408 TRP CZ3 CH2 sing Y N 409 TRP CZ3 HZ3 sing N N 410 TRP CH2 HH2 sing N N 411 TRP OXT HXT sing N N 412 TYR N CA sing N N 413 TYR N H sing N N 414 TYR N H2 sing N N 415 TYR CA C sing N N 416 TYR CA CB sing N N 417 TYR CA HA sing N N 418 TYR C O doub N N 419 TYR C OXT sing N N 420 TYR CB CG sing N N 421 TYR CB HB2 sing N N 422 TYR CB HB3 sing N N 423 TYR CG CD1 doub Y N 424 TYR CG CD2 sing Y N 425 TYR CD1 CE1 sing Y N 426 TYR CD1 HD1 sing N N 427 TYR CD2 CE2 doub Y N 428 TYR CD2 HD2 sing N N 429 TYR CE1 CZ doub Y N 430 TYR CE1 HE1 sing N N 431 TYR CE2 CZ sing Y N 432 TYR CE2 HE2 sing N N 433 TYR CZ OH sing N N 434 TYR OH HH sing N N 435 TYR OXT HXT sing N N 436 VAL N CA sing N N 437 VAL N H sing N N 438 VAL N H2 sing N N 439 VAL CA C sing N N 440 VAL CA CB sing N N 441 VAL CA HA sing N N 442 VAL C O doub N N 443 VAL C OXT sing N N 444 VAL CB CG1 sing N N 445 VAL CB CG2 sing N N 446 VAL CB HB sing N N 447 VAL CG1 HG11 sing N N 448 VAL CG1 HG12 sing N N 449 VAL CG1 HG13 sing N N 450 VAL CG2 HG21 sing N N 451 VAL CG2 HG22 sing N N 452 VAL CG2 HG23 sing N N 453 VAL OXT HXT sing N N 454 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3EJH _pdbx_initial_refinement_model.details 'PDB Entry 3EJH, Chain A and part of chain E' #