data_3GXS # _entry.id 3GXS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GXS RCSB RCSB052439 WWPDB D_1000052439 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-02-02 _pdbx_database_PDB_obs_spr.pdb_id 3LAX _pdbx_database_PDB_obs_spr.replace_pdb_id 3GXS _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC62324.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3GXS _pdbx_database_status.recvd_initial_deposition_date 2009-04-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Wu, R.' 2 'Cobb, G.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a domain of phenylacetate-coenzyme A ligase from Bacteroides vulgatus ATCC 8482' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Wu, R.' 2 primary 'Cobb, G.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3GXS _cell.length_a 33.737 _cell.length_b 44.334 _cell.length_c 67.601 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GXS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phenylacetate-coenzyme A ligase' 12473.078 1 ? ? 'Domain: UNP residues 327-432' ? 2 non-polymer syn 'ACETATE ION' 59.044 6 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNADD(MSE)IILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDE(MSE)TVEVELSQLFTDDYGRLQALTREITR QLKDEILVTPRVKLVPKGALPKSEGKAVRVKDLRKTF ; _entity_poly.pdbx_seq_one_letter_code_can ;SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV TPRVKLVPKGALPKSEGKAVRVKDLRKTF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC62324.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASP n 1 5 ASP n 1 6 MSE n 1 7 ILE n 1 8 ILE n 1 9 LEU n 1 10 LYS n 1 11 GLY n 1 12 VAL n 1 13 ASN n 1 14 ILE n 1 15 PHE n 1 16 PRO n 1 17 ILE n 1 18 GLN n 1 19 ILE n 1 20 GLU n 1 21 THR n 1 22 ILE n 1 23 LEU n 1 24 LEU n 1 25 GLN n 1 26 PHE n 1 27 LYS n 1 28 GLU n 1 29 LEU n 1 30 GLY n 1 31 SER n 1 32 ASP n 1 33 TYR n 1 34 LEU n 1 35 ILE n 1 36 THR n 1 37 LEU n 1 38 GLU n 1 39 THR n 1 40 ALA n 1 41 GLU n 1 42 SER n 1 43 ASN n 1 44 ASP n 1 45 GLU n 1 46 MSE n 1 47 THR n 1 48 VAL n 1 49 GLU n 1 50 VAL n 1 51 GLU n 1 52 LEU n 1 53 SER n 1 54 GLN n 1 55 LEU n 1 56 PHE n 1 57 THR n 1 58 ASP n 1 59 ASP n 1 60 TYR n 1 61 GLY n 1 62 ARG n 1 63 LEU n 1 64 GLN n 1 65 ALA n 1 66 LEU n 1 67 THR n 1 68 ARG n 1 69 GLU n 1 70 ILE n 1 71 THR n 1 72 ARG n 1 73 GLN n 1 74 LEU n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 ILE n 1 79 LEU n 1 80 VAL n 1 81 THR n 1 82 PRO n 1 83 ARG n 1 84 VAL n 1 85 LYS n 1 86 LEU n 1 87 VAL n 1 88 PRO n 1 89 LYS n 1 90 GLY n 1 91 ALA n 1 92 LEU n 1 93 PRO n 1 94 LYS n 1 95 SER n 1 96 GLU n 1 97 GLY n 1 98 LYS n 1 99 ALA n 1 100 VAL n 1 101 ARG n 1 102 VAL n 1 103 LYS n 1 104 ASP n 1 105 LEU n 1 106 ARG n 1 107 LYS n 1 108 THR n 1 109 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BVU_1668 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 1447 / NCTC 11154' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides vulgatus ATCC 8482' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8482 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6L0Y5_BACV8 _struct_ref.pdbx_db_accession A6L0Y5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR VKLVPKGALPKSEGKAVRVKDLRKTF ; _struct_ref.pdbx_align_begin 327 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GXS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6L0Y5 _struct_ref_seq.db_align_beg 327 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 432 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 327 _struct_ref_seq.pdbx_auth_seq_align_end 432 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GXS SER A 1 ? UNP A6L0Y5 ? ? 'EXPRESSION TAG' 324 1 1 3GXS ASN A 2 ? UNP A6L0Y5 ? ? 'EXPRESSION TAG' 325 2 1 3GXS ALA A 3 ? UNP A6L0Y5 ? ? 'EXPRESSION TAG' 326 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GXS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M Ammonium acetate, 0.1M HEPES, 45% w/v MPD, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-12-21 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) crystal' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 3GXS _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 37.06 _reflns.d_resolution_high 1.43 _reflns.number_obs 19292 _reflns.number_all 19292 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.43 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs 0.709 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.96 _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 914 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GXS _refine.ls_number_reflns_obs 18233 _refine.ls_number_reflns_all 18233 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.06 _refine.ls_d_res_high 1.43 _refine.ls_percent_reflns_obs 98.77 _refine.ls_R_factor_obs 0.18692 _refine.ls_R_factor_all 0.18692 _refine.ls_R_factor_R_work 0.18462 _refine.ls_R_factor_R_free 0.23241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 988 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 24.831 _refine.aniso_B[1][1] 0.20 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] -0.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.081 _refine.overall_SU_ML 0.049 _refine.overall_SU_B 2.715 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 918 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1050 _refine_hist.d_res_high 1.43 _refine_hist.d_res_low 37.06 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 966 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.921 2.034 ? 1314 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.871 5.000 ? 130 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.065 25.122 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.660 15.000 ? 203 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.962 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 161 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 699 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.063 1.500 ? 585 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.138 2.000 ? 957 'X-RAY DIFFRACTION' ? r_scbond_it 4.052 3.000 ? 381 'X-RAY DIFFRACTION' ? r_scangle_it 5.829 4.500 ? 344 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.322 3.000 ? 966 'X-RAY DIFFRACTION' ? r_sphericity_free 9.514 3.000 ? 97 'X-RAY DIFFRACTION' ? r_sphericity_bonded 7.521 3.000 ? 953 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.43 _refine_ls_shell.d_res_low 1.47 _refine_ls_shell.number_reflns_R_work 1282 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 94.95 _refine_ls_shell.R_factor_R_free 0.350 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GXS _struct.title 'Crystal structure of a domain of phenylacetate-coenzyme A ligase from Bacteroides vulgatus ATCC 8482' _struct.pdbx_descriptor 'Phenylacetate-coenzyme A ligase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GXS _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;APC62324.1, phenylacetate-coenzyme A ligase, Bacteroides vulgatus ATCC 8482, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Ligase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY UNKNOWN. THE DOMAIN IS PREDICTED TO BE MONOMERIC.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ASP A 5 ? SER A 324 ASP A 328 5 ? 5 HELX_P HELX_P2 2 PHE A 15 ? GLN A 25 ? PHE A 338 GLN A 348 1 ? 11 HELX_P HELX_P3 3 ASP A 59 ? LEU A 79 ? ASP A 382 LEU A 402 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASP 5 C ? ? ? 1_555 A MSE 6 N ? ? A ASP 328 A MSE 329 1_555 ? ? ? ? ? ? ? 1.339 ? covale2 covale ? ? A MSE 6 C ? ? ? 1_555 A ILE 7 N ? ? A MSE 329 A ILE 330 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLU 45 C ? ? ? 1_555 A MSE 46 N ? ? A GLU 368 A MSE 369 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 46 C ? ? ? 1_555 A THR 47 N ? ? A MSE 369 A THR 370 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 7 ? LEU A 9 ? ILE A 330 LEU A 332 A 2 VAL A 12 ? ILE A 14 ? VAL A 335 ILE A 337 B 1 ARG A 83 ? VAL A 87 ? ARG A 406 VAL A 410 B 2 ASN A 43 ? LEU A 52 ? ASN A 366 LEU A 375 B 3 LEU A 29 ? ALA A 40 ? LEU A 352 ALA A 363 B 4 VAL A 102 ? ASP A 104 ? VAL A 425 ASP A 427 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 7 ? N ILE A 330 O ILE A 14 ? O ILE A 337 B 1 2 O ARG A 83 ? O ARG A 406 N VAL A 48 ? N VAL A 371 B 2 3 O ASN A 43 ? O ASN A 366 N ALA A 40 ? N ALA A 363 B 3 4 N ILE A 35 ? N ILE A 358 O LYS A 103 ? O LYS A 426 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACT A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ACT A 2' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACT A 3' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT A 4' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT A 5' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACT A 6' AC7 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE GOL A 433' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 434' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH J . ? HOH A 33 . ? 3_545 ? 2 AC1 6 HOH J . ? HOH A 40 . ? 3_545 ? 3 AC1 6 GLU A 20 ? GLU A 343 . ? 1_555 ? 4 AC1 6 THR A 21 ? THR A 344 . ? 1_555 ? 5 AC1 6 LEU A 24 ? LEU A 347 . ? 1_555 ? 6 AC1 6 ARG A 68 ? ARG A 391 . ? 3_545 ? 7 AC2 5 HOH J . ? HOH A 49 . ? 1_555 ? 8 AC2 5 LYS A 27 ? LYS A 350 . ? 1_555 ? 9 AC2 5 GLU A 28 ? GLU A 351 . ? 1_555 ? 10 AC2 5 LEU A 55 ? LEU A 378 . ? 1_555 ? 11 AC2 5 ASP A 58 ? ASP A 381 . ? 1_555 ? 12 AC3 2 PHE A 26 ? PHE A 349 . ? 1_555 ? 13 AC3 2 GLN A 73 ? GLN A 396 . ? 1_555 ? 14 AC4 3 HOH J . ? HOH A 84 . ? 1_555 ? 15 AC4 3 GLU A 28 ? GLU A 351 . ? 1_555 ? 16 AC4 3 ARG A 62 ? ARG A 385 . ? 1_555 ? 17 AC5 3 ALA A 65 ? ALA A 388 . ? 1_555 ? 18 AC5 3 ARG A 68 ? ARG A 391 . ? 1_555 ? 19 AC5 3 HOH J . ? HOH A 437 . ? 1_555 ? 20 AC6 6 THR A 36 ? THR A 359 . ? 1_555 ? 21 AC6 6 GLU A 38 ? GLU A 361 . ? 1_555 ? 22 AC6 6 THR A 47 ? THR A 370 . ? 1_555 ? 23 AC6 6 GLU A 49 ? GLU A 372 . ? 1_555 ? 24 AC6 6 LYS A 85 ? LYS A 408 . ? 1_555 ? 25 AC6 6 HOH J . ? HOH A 436 . ? 1_555 ? 26 AC7 10 HOH J . ? HOH A 27 . ? 1_555 ? 27 AC7 10 HOH J . ? HOH A 56 . ? 4_566 ? 28 AC7 10 HOH J . ? HOH A 65 . ? 4_566 ? 29 AC7 10 HOH J . ? HOH A 76 . ? 1_555 ? 30 AC7 10 ASP A 32 ? ASP A 355 . ? 1_555 ? 31 AC7 10 GLN A 54 ? GLN A 377 . ? 1_555 ? 32 AC7 10 ASP A 76 ? ASP A 399 . ? 3_545 ? 33 AC7 10 LEU A 79 ? LEU A 402 . ? 3_545 ? 34 AC7 10 LYS A 94 ? LYS A 417 . ? 1_555 ? 35 AC7 10 LYS A 107 ? LYS A 430 . ? 4_566 ? 36 AC8 3 HOH J . ? HOH A 91 . ? 1_555 ? 37 AC8 3 GLU A 45 ? GLU A 368 . ? 1_555 ? 38 AC8 3 ARG A 83 ? ARG A 406 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GXS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GXS _atom_sites.fract_transf_matrix[1][1] 0.029641 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022556 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014793 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 324 324 SER SER A . n A 1 2 ASN 2 325 325 ASN ASN A . n A 1 3 ALA 3 326 326 ALA ALA A . n A 1 4 ASP 4 327 327 ASP ASP A . n A 1 5 ASP 5 328 328 ASP ASP A . n A 1 6 MSE 6 329 329 MSE MSE A . n A 1 7 ILE 7 330 330 ILE ILE A . n A 1 8 ILE 8 331 331 ILE ILE A . n A 1 9 LEU 9 332 332 LEU LEU A . n A 1 10 LYS 10 333 333 LYS LYS A . n A 1 11 GLY 11 334 334 GLY GLY A . n A 1 12 VAL 12 335 335 VAL VAL A . n A 1 13 ASN 13 336 336 ASN ASN A . n A 1 14 ILE 14 337 337 ILE ILE A . n A 1 15 PHE 15 338 338 PHE PHE A . n A 1 16 PRO 16 339 339 PRO PRO A . n A 1 17 ILE 17 340 340 ILE ILE A . n A 1 18 GLN 18 341 341 GLN GLN A . n A 1 19 ILE 19 342 342 ILE ILE A . n A 1 20 GLU 20 343 343 GLU GLU A . n A 1 21 THR 21 344 344 THR THR A . n A 1 22 ILE 22 345 345 ILE ILE A . n A 1 23 LEU 23 346 346 LEU LEU A . n A 1 24 LEU 24 347 347 LEU LEU A . n A 1 25 GLN 25 348 348 GLN GLN A . n A 1 26 PHE 26 349 349 PHE PHE A . n A 1 27 LYS 27 350 350 LYS LYS A . n A 1 28 GLU 28 351 351 GLU GLU A . n A 1 29 LEU 29 352 352 LEU LEU A . n A 1 30 GLY 30 353 353 GLY GLY A . n A 1 31 SER 31 354 354 SER SER A . n A 1 32 ASP 32 355 355 ASP ASP A . n A 1 33 TYR 33 356 356 TYR TYR A . n A 1 34 LEU 34 357 357 LEU LEU A . n A 1 35 ILE 35 358 358 ILE ILE A . n A 1 36 THR 36 359 359 THR THR A . n A 1 37 LEU 37 360 360 LEU LEU A . n A 1 38 GLU 38 361 361 GLU GLU A . n A 1 39 THR 39 362 362 THR THR A . n A 1 40 ALA 40 363 363 ALA ALA A . n A 1 41 GLU 41 364 364 GLU GLU A . n A 1 42 SER 42 365 365 SER SER A . n A 1 43 ASN 43 366 366 ASN ASN A . n A 1 44 ASP 44 367 367 ASP ASP A . n A 1 45 GLU 45 368 368 GLU GLU A . n A 1 46 MSE 46 369 369 MSE MSE A . n A 1 47 THR 47 370 370 THR THR A . n A 1 48 VAL 48 371 371 VAL VAL A . n A 1 49 GLU 49 372 372 GLU GLU A . n A 1 50 VAL 50 373 373 VAL VAL A . n A 1 51 GLU 51 374 374 GLU GLU A . n A 1 52 LEU 52 375 375 LEU LEU A . n A 1 53 SER 53 376 376 SER SER A . n A 1 54 GLN 54 377 377 GLN GLN A . n A 1 55 LEU 55 378 378 LEU LEU A . n A 1 56 PHE 56 379 379 PHE PHE A . n A 1 57 THR 57 380 380 THR THR A . n A 1 58 ASP 58 381 381 ASP ASP A . n A 1 59 ASP 59 382 382 ASP ASP A . n A 1 60 TYR 60 383 383 TYR TYR A . n A 1 61 GLY 61 384 384 GLY GLY A . n A 1 62 ARG 62 385 385 ARG ARG A . n A 1 63 LEU 63 386 386 LEU LEU A . n A 1 64 GLN 64 387 387 GLN GLN A . n A 1 65 ALA 65 388 388 ALA ALA A . n A 1 66 LEU 66 389 389 LEU LEU A . n A 1 67 THR 67 390 390 THR THR A . n A 1 68 ARG 68 391 391 ARG ARG A . n A 1 69 GLU 69 392 392 GLU GLU A . n A 1 70 ILE 70 393 393 ILE ILE A . n A 1 71 THR 71 394 394 THR THR A . n A 1 72 ARG 72 395 395 ARG ARG A . n A 1 73 GLN 73 396 396 GLN GLN A . n A 1 74 LEU 74 397 397 LEU LEU A . n A 1 75 LYS 75 398 398 LYS LYS A . n A 1 76 ASP 76 399 399 ASP ASP A . n A 1 77 GLU 77 400 400 GLU GLU A . n A 1 78 ILE 78 401 401 ILE ILE A . n A 1 79 LEU 79 402 402 LEU LEU A . n A 1 80 VAL 80 403 403 VAL VAL A . n A 1 81 THR 81 404 404 THR THR A . n A 1 82 PRO 82 405 405 PRO PRO A . n A 1 83 ARG 83 406 406 ARG ARG A . n A 1 84 VAL 84 407 407 VAL VAL A . n A 1 85 LYS 85 408 408 LYS LYS A . n A 1 86 LEU 86 409 409 LEU LEU A . n A 1 87 VAL 87 410 410 VAL VAL A . n A 1 88 PRO 88 411 411 PRO PRO A . n A 1 89 LYS 89 412 412 LYS LYS A . n A 1 90 GLY 90 413 413 GLY GLY A . n A 1 91 ALA 91 414 414 ALA ALA A . n A 1 92 LEU 92 415 415 LEU LEU A . n A 1 93 PRO 93 416 416 PRO PRO A . n A 1 94 LYS 94 417 417 LYS LYS A . n A 1 95 SER 95 418 418 SER SER A . n A 1 96 GLU 96 419 ? ? ? A . n A 1 97 GLY 97 420 ? ? ? A . n A 1 98 LYS 98 421 ? ? ? A . n A 1 99 ALA 99 422 422 ALA ALA A . n A 1 100 VAL 100 423 423 VAL VAL A . n A 1 101 ARG 101 424 424 ARG ARG A . n A 1 102 VAL 102 425 425 VAL VAL A . n A 1 103 LYS 103 426 426 LYS LYS A . n A 1 104 ASP 104 427 427 ASP ASP A . n A 1 105 LEU 105 428 428 LEU LEU A . n A 1 106 ARG 106 429 429 ARG ARG A . n A 1 107 LYS 107 430 430 LYS LYS A . n A 1 108 THR 108 431 431 THR THR A . n A 1 109 PHE 109 432 432 PHE PHE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 1 1 ACT ACT A . C 2 ACT 1 2 2 ACT ACT A . D 2 ACT 1 3 3 ACT ACT A . E 2 ACT 1 4 4 ACT ACT A . F 2 ACT 1 5 5 ACT ACT A . G 2 ACT 1 6 6 ACT ACT A . H 3 GOL 1 433 1 GOL GOL A . I 4 SO4 1 434 1 SO4 SO4 A . J 5 HOH 1 7 7 HOH HOH A . J 5 HOH 2 8 8 HOH HOH A . J 5 HOH 3 9 9 HOH HOH A . J 5 HOH 4 10 10 HOH HOH A . J 5 HOH 5 11 11 HOH HOH A . J 5 HOH 6 12 12 HOH HOH A . J 5 HOH 7 13 13 HOH HOH A . J 5 HOH 8 14 14 HOH HOH A . J 5 HOH 9 15 15 HOH HOH A . J 5 HOH 10 16 16 HOH HOH A . J 5 HOH 11 17 17 HOH HOH A . J 5 HOH 12 18 18 HOH HOH A . J 5 HOH 13 19 19 HOH HOH A . J 5 HOH 14 20 20 HOH HOH A . J 5 HOH 15 21 21 HOH HOH A . J 5 HOH 16 22 22 HOH HOH A . J 5 HOH 17 23 23 HOH HOH A . J 5 HOH 18 24 24 HOH HOH A . J 5 HOH 19 25 25 HOH HOH A . J 5 HOH 20 26 26 HOH HOH A . J 5 HOH 21 27 27 HOH HOH A . J 5 HOH 22 28 28 HOH HOH A . J 5 HOH 23 29 29 HOH HOH A . J 5 HOH 24 30 30 HOH HOH A . J 5 HOH 25 31 31 HOH HOH A . J 5 HOH 26 32 32 HOH HOH A . J 5 HOH 27 33 33 HOH HOH A . J 5 HOH 28 34 34 HOH HOH A . J 5 HOH 29 35 35 HOH HOH A . J 5 HOH 30 36 36 HOH HOH A . J 5 HOH 31 37 37 HOH HOH A . J 5 HOH 32 38 38 HOH HOH A . J 5 HOH 33 39 39 HOH HOH A . J 5 HOH 34 40 40 HOH HOH A . J 5 HOH 35 41 41 HOH HOH A . J 5 HOH 36 42 42 HOH HOH A . J 5 HOH 37 43 43 HOH HOH A . J 5 HOH 38 44 44 HOH HOH A . J 5 HOH 39 45 45 HOH HOH A . J 5 HOH 40 46 46 HOH HOH A . J 5 HOH 41 47 47 HOH HOH A . J 5 HOH 42 48 48 HOH HOH A . J 5 HOH 43 49 49 HOH HOH A . J 5 HOH 44 50 50 HOH HOH A . J 5 HOH 45 51 51 HOH HOH A . J 5 HOH 46 52 52 HOH HOH A . J 5 HOH 47 53 53 HOH HOH A . J 5 HOH 48 54 54 HOH HOH A . J 5 HOH 49 55 55 HOH HOH A . J 5 HOH 50 56 56 HOH HOH A . J 5 HOH 51 57 57 HOH HOH A . J 5 HOH 52 58 58 HOH HOH A . J 5 HOH 53 59 59 HOH HOH A . J 5 HOH 54 60 60 HOH HOH A . J 5 HOH 55 61 61 HOH HOH A . J 5 HOH 56 62 62 HOH HOH A . J 5 HOH 57 63 63 HOH HOH A . J 5 HOH 58 64 64 HOH HOH A . J 5 HOH 59 65 65 HOH HOH A . J 5 HOH 60 66 66 HOH HOH A . J 5 HOH 61 67 67 HOH HOH A . J 5 HOH 62 68 68 HOH HOH A . J 5 HOH 63 69 69 HOH HOH A . J 5 HOH 64 70 70 HOH HOH A . J 5 HOH 65 71 71 HOH HOH A . J 5 HOH 66 72 72 HOH HOH A . J 5 HOH 67 73 73 HOH HOH A . J 5 HOH 68 74 74 HOH HOH A . J 5 HOH 69 75 75 HOH HOH A . J 5 HOH 70 76 76 HOH HOH A . J 5 HOH 71 77 77 HOH HOH A . J 5 HOH 72 78 78 HOH HOH A . J 5 HOH 73 79 79 HOH HOH A . J 5 HOH 74 80 80 HOH HOH A . J 5 HOH 75 81 81 HOH HOH A . J 5 HOH 76 82 82 HOH HOH A . J 5 HOH 77 83 83 HOH HOH A . J 5 HOH 78 84 84 HOH HOH A . J 5 HOH 79 85 85 HOH HOH A . J 5 HOH 80 86 86 HOH HOH A . J 5 HOH 81 87 87 HOH HOH A . J 5 HOH 82 88 88 HOH HOH A . J 5 HOH 83 89 89 HOH HOH A . J 5 HOH 84 90 90 HOH HOH A . J 5 HOH 85 91 91 HOH HOH A . J 5 HOH 86 92 92 HOH HOH A . J 5 HOH 87 93 93 HOH HOH A . J 5 HOH 88 94 94 HOH HOH A . J 5 HOH 89 95 95 HOH HOH A . J 5 HOH 90 96 96 HOH HOH A . J 5 HOH 91 97 97 HOH HOH A . J 5 HOH 92 435 1 HOH HOH A . J 5 HOH 93 436 2 HOH HOH A . J 5 HOH 94 437 3 HOH HOH A . J 5 HOH 95 438 4 HOH HOH A . J 5 HOH 96 439 5 HOH HOH A . J 5 HOH 97 440 6 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 329 ? MET SELENOMETHIONINE 2 A MSE 46 A MSE 369 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2010-02-02 3 'Structure model' 1 2 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 3 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD 'model building' . ? 2 MLPHARE 'model building' . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 HKL-3000 'model building' . ? 6 REFMAC refinement 5.5.0054 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELXD phasing . ? 10 MLPHARE phasing . ? 11 DM phasing . ? 12 ARP/wARP phasing . ? 13 HKL-3000 phasing . ? 14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 333 ? ? 27.40 58.61 2 1 GLU A 364 ? ? 36.34 -97.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 419 ? A GLU 96 2 1 Y 1 A GLY 420 ? A GLY 97 3 1 Y 1 A LYS 421 ? A LYS 98 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 GLYCEROL GOL 4 'SULFATE ION' SO4 5 water HOH #