data_3GY9 # _entry.id 3GY9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GY9 pdb_00003gy9 10.2210/pdb3gy9/pdb RCSB RCSB052456 ? ? WWPDB D_1000052456 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 379362 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GY9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative acetyltransferase (YP_001815201.1) from EXIGUOBACTERIUM SP. 255-15 at 1.52 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3GY9 _cell.length_a 55.850 _cell.length_b 66.430 _cell.length_c 87.730 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GY9 _symmetry.Int_Tables_number 23 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GCN5-related N-acetyltransferase' 17201.553 1 ? ? ? ? 2 non-polymer syn 'COENZYME A' 767.534 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 137 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DVTIERVNDFDGYNWLPLLAKSSQEGFQLVER(MSE)LRNRREESFQEDGEA(MSE)FVALSTTNQVLACGGY (MSE)KQSGQARTGRIRHVYVLPEARSHGIGTALLEKI(MSE)SEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHT LDKTAFADSNR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIR HVYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADSNR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 379362 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 VAL n 1 5 THR n 1 6 ILE n 1 7 GLU n 1 8 ARG n 1 9 VAL n 1 10 ASN n 1 11 ASP n 1 12 PHE n 1 13 ASP n 1 14 GLY n 1 15 TYR n 1 16 ASN n 1 17 TRP n 1 18 LEU n 1 19 PRO n 1 20 LEU n 1 21 LEU n 1 22 ALA n 1 23 LYS n 1 24 SER n 1 25 SER n 1 26 GLN n 1 27 GLU n 1 28 GLY n 1 29 PHE n 1 30 GLN n 1 31 LEU n 1 32 VAL n 1 33 GLU n 1 34 ARG n 1 35 MSE n 1 36 LEU n 1 37 ARG n 1 38 ASN n 1 39 ARG n 1 40 ARG n 1 41 GLU n 1 42 GLU n 1 43 SER n 1 44 PHE n 1 45 GLN n 1 46 GLU n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 ALA n 1 51 MSE n 1 52 PHE n 1 53 VAL n 1 54 ALA n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 THR n 1 59 ASN n 1 60 GLN n 1 61 VAL n 1 62 LEU n 1 63 ALA n 1 64 CYS n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 MSE n 1 69 LYS n 1 70 GLN n 1 71 SER n 1 72 GLY n 1 73 GLN n 1 74 ALA n 1 75 ARG n 1 76 THR n 1 77 GLY n 1 78 ARG n 1 79 ILE n 1 80 ARG n 1 81 HIS n 1 82 VAL n 1 83 TYR n 1 84 VAL n 1 85 LEU n 1 86 PRO n 1 87 GLU n 1 88 ALA n 1 89 ARG n 1 90 SER n 1 91 HIS n 1 92 GLY n 1 93 ILE n 1 94 GLY n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 LEU n 1 99 GLU n 1 100 LYS n 1 101 ILE n 1 102 MSE n 1 103 SER n 1 104 GLU n 1 105 ALA n 1 106 PHE n 1 107 LEU n 1 108 THR n 1 109 TYR n 1 110 ASP n 1 111 ARG n 1 112 LEU n 1 113 VAL n 1 114 LEU n 1 115 TYR n 1 116 SER n 1 117 GLU n 1 118 GLN n 1 119 ALA n 1 120 ASP n 1 121 PRO n 1 122 PHE n 1 123 TYR n 1 124 GLN n 1 125 GLY n 1 126 LEU n 1 127 GLY n 1 128 PHE n 1 129 GLN n 1 130 LEU n 1 131 VAL n 1 132 SER n 1 133 GLY n 1 134 GLU n 1 135 LYS n 1 136 ILE n 1 137 THR n 1 138 HIS n 1 139 THR n 1 140 LEU n 1 141 ASP n 1 142 LYS n 1 143 THR n 1 144 ALA n 1 145 PHE n 1 146 ALA n 1 147 ASP n 1 148 SER n 1 149 ASN n 1 150 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Exig_2736, YP_001815201.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Exiguobacterium sibiricum 255-15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262543 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B1YEL6_EXIS2 _struct_ref.pdbx_db_accession B1YEL6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRH VYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADSNR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GY9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B1YEL6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3GY9 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B1YEL6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GY9 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.00 _exptl_crystal.description 'THE RMERGE AND STATISTICS REPORTED HERE BY XSCALE ARE BASED ON TREATING FRIEDEL PAIRS AS SEPARATE REFLECTIONS.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;3.2M ammonium sulfate, 0.1M Bicine pH 9.0, Additive: 0.001 M acetyl Co-enzyme A, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'Vertical focusing mirror' _diffrn_detector.pdbx_collection_date 2008-07-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(311) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979032 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_wavelength 0.979032 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GY9 _reflns.d_resolution_high 1.52 _reflns.d_resolution_low 27.146 _reflns.number_obs 25437 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.percent_possible_obs 98.800 _reflns.B_iso_Wilson_estimate 15.026 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.440 _reflns.pdbx_redundancy 3.97 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.52 1.57 9028 ? 4403 0.443 2.1 ? ? ? ? ? 98.30 1 1 1.57 1.64 11114 ? 5366 0.341 2.7 ? ? ? ? ? 99.10 2 1 1.64 1.71 9422 ? 4517 0.250 3.7 ? ? ? ? ? 99.30 3 1 1.71 1.80 10104 ? 4838 0.185 4.9 ? ? ? ? ? 99.10 4 1 1.80 1.91 9838 ? 4705 0.128 7.1 ? ? ? ? ? 99.00 5 1 1.91 2.06 10367 ? 4924 0.080 10.4 ? ? ? ? ? 98.80 6 1 2.06 2.27 10262 ? 4862 0.052 15.3 ? ? ? ? ? 99.20 7 1 2.27 2.60 10227 ? 4828 0.039 19.2 ? ? ? ? ? 98.80 8 1 2.60 3.27 10046 ? 4739 0.030 24.5 ? ? ? ? ? 98.00 9 1 3.27 27.146 10227 ? 4791 0.019 34.4 ? ? ? ? ? 98.00 10 1 # _refine.entry_id 3GY9 _refine.ls_d_res_high 1.520 _refine.ls_d_res_low 27.146 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.740 _refine.ls_number_reflns_obs 25434 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. 5. ACETYL COENZYME A WAS INCLUDED AS AN ADDITIVE FOR CRYSTALLIZATION. WE SEE NO DENSITY FOR THE ACETYL GROUP AND HAVE MODELED IT IN THE STRUCTURE AS COENZYME A. THE PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE MOIETIES OF THE CO-A ARE DISORDERED AND HAVE BEEN MODELED IN TWO CONFORMATIONS. THE PEPTIDE LINKING THE PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE IN CONFORMER A HAS BEEN BUILT IN A DIFFERENT ORIENTATION THAT IN THE MODEL FOR THE RELATED PH 6 STRUCTURE. WHILE THIS APPEARS PLAUSIBLE, GIVEN THE AMBIGUITY IN THE DENSITY FOR THIS REGION, NO CONCLUSIONS SHOULD BE DRAWN WITH HIGH CONFIDENCE. 6. FOUR SULFATE IONS AND TWO GLYCEROL MOLECULES FROM THE CRYSTALLIZATION AND CRYOPROTECTION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. ONE OF THE SULFATE MOLECULES, A204, WAS MODELED WITH PARTIAL OCCUPANCY IN TWO ALTERNATE POSITIONS AT THE PUTATIVE ACTIVE SITE. ASSIGNMENT OF THIS ELECTRON DENSITY TO A DISORDERED SULFATE IS TENTATIVE. 7. LOOPS 131-134 and 70-73 ARE DISORDERED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.161 _refine.ls_R_factor_R_work 0.160 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.178 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1301 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.342 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.190 _refine.aniso_B[2][2] 0.170 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.070 _refine.pdbx_overall_ESU_R_Free 0.067 _refine.overall_SU_ML 0.044 _refine.overall_SU_B 2.247 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 68.36 _refine.B_iso_min 8.64 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1174 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1391 _refine_hist.d_res_high 1.520 _refine_hist.d_res_low 27.146 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1343 0.011 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1184 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1832 1.339 2.027 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2750 0.801 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 166 5.050 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 64 32.478 23.750 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 219 11.677 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 18.213 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 192 0.077 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1465 0.005 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 274 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 223 0.211 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1268 0.186 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 646 0.177 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 792 0.081 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 117 0.137 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 11 0.193 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 45 0.277 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 14 0.177 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 820 1.844 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 319 0.363 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1235 2.432 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 619 3.669 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 588 5.012 11.000 ? ? # _refine_ls_shell.d_res_high 1.520 _refine_ls_shell.d_res_low 1.559 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.300 _refine_ls_shell.number_reflns_R_work 1735 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.R_factor_R_free 0.240 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1837 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GY9 _struct.title 'Crystal structure of putative acetyltransferase (YP_001815201.1) from EXIGUOBACTERIUM SP. 255-15 at 1.52 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001815201.1, putative acetyltransferase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Transferase, Unknown function ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3GY9 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 11 ? TYR A 15 ? ASP A 10 TYR A 14 5 ? 5 HELX_P HELX_P2 2 TRP A 17 ? GLU A 27 ? TRP A 16 GLU A 26 1 ? 11 HELX_P HELX_P3 3 GLN A 30 ? ASN A 38 ? GLN A 29 ASN A 37 1 ? 9 HELX_P HELX_P4 4 PRO A 86 ? ARG A 89 ? PRO A 85 ARG A 88 5 ? 4 HELX_P HELX_P5 5 GLY A 92 ? PHE A 106 ? GLY A 91 PHE A 105 1 ? 15 HELX_P HELX_P6 6 ALA A 119 ? LEU A 126 ? ALA A 118 LEU A 125 1 ? 8 HELX_P HELX_P7 7 LYS A 142 ? SER A 148 ? LYS A 141 SER A 147 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A ASP 3 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A ARG 34 C ? ? ? 1_555 A MSE 35 N ? ? A ARG 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A MSE 35 C ? ? ? 1_555 A LEU 36 N ? ? A MSE 34 A LEU 35 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale4 covale both ? A ALA 50 C ? ? ? 1_555 A MSE 51 N ? ? A ALA 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A MSE 51 C ? ? ? 1_555 A PHE 52 N ? ? A MSE 50 A PHE 51 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A TYR 67 C ? ? ? 1_555 A MSE 68 N ? ? A TYR 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A MSE 68 C ? ? ? 1_555 A LYS 69 N ? ? A MSE 67 A LYS 68 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ILE 101 C ? ? ? 1_555 A MSE 102 N ? ? A ILE 100 A MSE 101 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? A MSE 102 C ? ? ? 1_555 A SER 103 N ? ? A MSE 101 A SER 102 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale10 covale none ? B COA . S1P A ? ? 1_555 B COA . S1P A ? A COA 201 A COA 201 3_655 ? ? ? ? ? ? ? 2.037 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? ARG A 8 ? THR A 4 ARG A 7 A 2 ALA A 50 ? LEU A 55 ? ALA A 49 LEU A 54 A 3 VAL A 61 ? LYS A 69 ? VAL A 60 LYS A 68 A 4 THR A 76 ? VAL A 84 ? THR A 75 VAL A 83 A 5 ARG A 111 ? LEU A 114 ? ARG A 110 LEU A 113 A 6 HIS A 138 ? ASP A 141 ? HIS A 137 ASP A 140 A 7 GLN A 129 ? LEU A 130 ? GLN A 128 LEU A 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 7 ? N GLU A 6 O VAL A 53 ? O VAL A 52 A 2 3 N ALA A 54 ? N ALA A 53 O LEU A 62 ? O LEU A 61 A 3 4 N MSE A 68 ? N MSE A 67 O ARG A 78 ? O ARG A 77 A 4 5 N GLY A 77 ? N GLY A 76 O ARG A 111 ? O ARG A 110 A 5 6 N LEU A 112 ? N LEU A 111 O LEU A 140 ? O LEU A 139 A 6 7 O THR A 139 ? O THR A 138 N GLN A 129 ? N GLN A 128 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A COA 201 ? 19 'BINDING SITE FOR RESIDUE COA A 201' AC2 Software A SO4 202 ? 8 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software A SO4 203 ? 5 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software A SO4 204 ? 9 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software A SO4 205 ? 5 'BINDING SITE FOR RESIDUE SO4 A 205' AC6 Software A GOL 206 ? 5 'BINDING SITE FOR RESIDUE GOL A 206' AC7 Software A GOL 207 ? 7 'BINDING SITE FOR RESIDUE GOL A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 GLN A 26 ? GLN A 25 . ? 3_655 ? 2 AC1 19 GLU A 27 ? GLU A 26 . ? 3_655 ? 3 AC1 19 VAL A 82 ? VAL A 81 . ? 1_555 ? 4 AC1 19 VAL A 84 ? VAL A 83 . ? 1_555 ? 5 AC1 19 ARG A 89 ? ARG A 88 . ? 1_555 ? 6 AC1 19 SER A 90 ? SER A 89 . ? 1_555 ? 7 AC1 19 HIS A 91 ? HIS A 90 . ? 1_555 ? 8 AC1 19 GLY A 92 ? GLY A 91 . ? 1_555 ? 9 AC1 19 ILE A 93 ? ILE A 92 . ? 1_555 ? 10 AC1 19 GLY A 94 ? GLY A 93 . ? 1_555 ? 11 AC1 19 THR A 95 ? THR A 94 . ? 1_555 ? 12 AC1 19 GLN A 118 ? GLN A 117 . ? 1_555 ? 13 AC1 19 ALA A 119 ? ALA A 118 . ? 1_555 ? 14 AC1 19 PHE A 122 ? PHE A 121 . ? 1_555 ? 15 AC1 19 HOH I . ? HOH A 313 . ? 1_555 ? 16 AC1 19 HOH I . ? HOH A 320 . ? 1_555 ? 17 AC1 19 HOH I . ? HOH A 322 . ? 1_555 ? 18 AC1 19 HOH I . ? HOH A 323 . ? 1_555 ? 19 AC1 19 HOH I . ? HOH A 344 . ? 1_555 ? 20 AC2 8 ASN A 16 ? ASN A 15 . ? 2_655 ? 21 AC2 8 ASN A 16 ? ASN A 15 . ? 1_555 ? 22 AC2 8 GLN A 60 ? GLN A 59 . ? 1_555 ? 23 AC2 8 GLN A 60 ? GLN A 59 . ? 2_655 ? 24 AC2 8 HOH I . ? HOH A 213 . ? 1_555 ? 25 AC2 8 HOH I . ? HOH A 213 . ? 2_655 ? 26 AC2 8 HOH I . ? HOH A 294 . ? 2_655 ? 27 AC2 8 HOH I . ? HOH A 294 . ? 1_555 ? 28 AC3 5 GLY A 28 ? GLY A 27 . ? 1_555 ? 29 AC3 5 PHE A 29 ? PHE A 28 . ? 1_555 ? 30 AC3 5 GLN A 30 ? GLN A 29 . ? 1_555 ? 31 AC3 5 LEU A 31 ? LEU A 30 . ? 1_555 ? 32 AC3 5 ARG A 34 ? ARG A 33 . ? 1_555 ? 33 AC4 9 ARG A 34 ? ARG A 33 . ? 1_555 ? 34 AC4 9 ARG A 78 ? ARG A 77 . ? 1_555 ? 35 AC4 9 ARG A 80 ? ARG A 79 . ? 1_555 ? 36 AC4 9 HIS A 81 ? HIS A 80 . ? 1_555 ? 37 AC4 9 TYR A 115 ? TYR A 114 . ? 1_555 ? 38 AC4 9 GLU A 134 ? GLU A 133 . ? 2_665 ? 39 AC4 9 HOH I . ? HOH A 231 . ? 1_555 ? 40 AC4 9 HOH I . ? HOH A 331 . ? 1_555 ? 41 AC4 9 HOH I . ? HOH A 332 . ? 1_555 ? 42 AC5 5 ARG A 34 ? ARG A 33 . ? 1_555 ? 43 AC5 5 ASN A 38 ? ASN A 37 . ? 1_555 ? 44 AC5 5 GLU A 42 ? GLU A 41 . ? 1_555 ? 45 AC5 5 ARG A 80 ? ARG A 79 . ? 1_555 ? 46 AC5 5 HOH I . ? HOH A 221 . ? 1_555 ? 47 AC6 5 GLU A 7 ? GLU A 6 . ? 1_555 ? 48 AC6 5 ARG A 8 ? ARG A 7 . ? 1_555 ? 49 AC6 5 ARG A 37 ? ARG A 36 . ? 8_455 ? 50 AC6 5 LYS A 100 ? LYS A 99 . ? 1_555 ? 51 AC6 5 HOH I . ? HOH A 300 . ? 1_555 ? 52 AC7 7 GLU A 41 ? GLU A 40 . ? 1_555 ? 53 AC7 7 SER A 43 ? SER A 42 . ? 1_555 ? 54 AC7 7 GLU A 49 ? GLU A 48 . ? 1_555 ? 55 AC7 7 MSE A 68 ? MSE A 67 . ? 1_555 ? 56 AC7 7 HOH I . ? HOH A 257 . ? 1_555 ? 57 AC7 7 HOH I . ? HOH A 291 . ? 1_555 ? 58 AC7 7 HOH I . ? HOH A 299 . ? 1_555 ? # _atom_sites.entry_id 3GY9 _atom_sites.fract_transf_matrix[1][1] 0.017905 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015053 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011399 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ASN 10 9 9 ASN ASN A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 MSE 35 34 34 MSE MSE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 MSE 51 50 50 MSE MSE A . n A 1 52 PHE 52 51 51 PHE PHE A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 ASN 59 58 58 ASN ASN A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 TYR 67 66 66 TYR TYR A . n A 1 68 MSE 68 67 67 MSE MSE A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 GLN 73 72 72 GLN GLN A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 MSE 102 101 101 MSE MSE A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 TYR 109 108 108 TYR TYR A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ARG 111 110 110 ARG ARG A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 TYR 115 114 114 TYR TYR A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 PRO 121 120 120 PRO PRO A . n A 1 122 PHE 122 121 121 PHE PHE A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 GLN 124 123 123 GLN GLN A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 PHE 128 127 127 PHE PHE A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 LYS 135 134 134 LYS LYS A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 HIS 138 137 137 HIS HIS A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 SER 148 147 147 SER SER A . n A 1 149 ASN 149 148 148 ASN ASN A . n A 1 150 ARG 150 149 149 ARG ARG A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA 1 201 201 COA COA A . C 3 SO4 1 202 202 SO4 SO4 A . D 3 SO4 1 203 203 SO4 SO4 A . E 3 SO4 1 204 204 SO4 SO4 A . F 3 SO4 1 205 205 SO4 SO4 A . G 4 GOL 1 206 206 GOL GOL A . H 4 GOL 1 207 207 GOL GOL A . I 5 HOH 1 208 208 HOH HOH A . I 5 HOH 2 209 209 HOH HOH A . I 5 HOH 3 210 210 HOH HOH A . I 5 HOH 4 211 211 HOH HOH A . I 5 HOH 5 212 212 HOH HOH A . I 5 HOH 6 213 213 HOH HOH A . I 5 HOH 7 214 214 HOH HOH A . I 5 HOH 8 215 215 HOH HOH A . I 5 HOH 9 216 216 HOH HOH A . I 5 HOH 10 217 217 HOH HOH A . I 5 HOH 11 218 218 HOH HOH A . I 5 HOH 12 219 219 HOH HOH A . I 5 HOH 13 220 220 HOH HOH A . I 5 HOH 14 221 221 HOH HOH A . I 5 HOH 15 222 222 HOH HOH A . I 5 HOH 16 223 223 HOH HOH A . I 5 HOH 17 224 224 HOH HOH A . I 5 HOH 18 225 225 HOH HOH A . I 5 HOH 19 226 226 HOH HOH A . I 5 HOH 20 227 227 HOH HOH A . I 5 HOH 21 228 228 HOH HOH A . I 5 HOH 22 229 229 HOH HOH A . I 5 HOH 23 230 230 HOH HOH A . I 5 HOH 24 231 231 HOH HOH A . I 5 HOH 25 232 232 HOH HOH A . I 5 HOH 26 233 233 HOH HOH A . I 5 HOH 27 234 234 HOH HOH A . I 5 HOH 28 235 235 HOH HOH A . I 5 HOH 29 236 236 HOH HOH A . I 5 HOH 30 237 237 HOH HOH A . I 5 HOH 31 238 238 HOH HOH A . I 5 HOH 32 239 239 HOH HOH A . I 5 HOH 33 240 240 HOH HOH A . I 5 HOH 34 241 241 HOH HOH A . I 5 HOH 35 242 242 HOH HOH A . I 5 HOH 36 243 243 HOH HOH A . I 5 HOH 37 244 244 HOH HOH A . I 5 HOH 38 245 245 HOH HOH A . I 5 HOH 39 246 246 HOH HOH A . I 5 HOH 40 247 247 HOH HOH A . I 5 HOH 41 248 248 HOH HOH A . I 5 HOH 42 249 249 HOH HOH A . I 5 HOH 43 250 250 HOH HOH A . I 5 HOH 44 251 251 HOH HOH A . I 5 HOH 45 252 252 HOH HOH A . I 5 HOH 46 253 253 HOH HOH A . I 5 HOH 47 254 254 HOH HOH A . I 5 HOH 48 255 255 HOH HOH A . I 5 HOH 49 256 256 HOH HOH A . I 5 HOH 50 257 257 HOH HOH A . I 5 HOH 51 258 258 HOH HOH A . I 5 HOH 52 259 259 HOH HOH A . I 5 HOH 53 260 260 HOH HOH A . I 5 HOH 54 261 261 HOH HOH A . I 5 HOH 55 262 262 HOH HOH A . I 5 HOH 56 263 263 HOH HOH A . I 5 HOH 57 264 264 HOH HOH A . I 5 HOH 58 265 265 HOH HOH A . I 5 HOH 59 266 266 HOH HOH A . I 5 HOH 60 267 267 HOH HOH A . I 5 HOH 61 268 268 HOH HOH A . I 5 HOH 62 269 269 HOH HOH A . I 5 HOH 63 270 270 HOH HOH A . I 5 HOH 64 271 271 HOH HOH A . I 5 HOH 65 272 272 HOH HOH A . I 5 HOH 66 273 273 HOH HOH A . I 5 HOH 67 274 274 HOH HOH A . I 5 HOH 68 275 275 HOH HOH A . I 5 HOH 69 276 276 HOH HOH A . I 5 HOH 70 277 277 HOH HOH A . I 5 HOH 71 278 278 HOH HOH A . I 5 HOH 72 279 279 HOH HOH A . I 5 HOH 73 280 280 HOH HOH A . I 5 HOH 74 281 281 HOH HOH A . I 5 HOH 75 282 282 HOH HOH A . I 5 HOH 76 283 283 HOH HOH A . I 5 HOH 77 284 284 HOH HOH A . I 5 HOH 78 285 285 HOH HOH A . I 5 HOH 79 286 286 HOH HOH A . I 5 HOH 80 287 287 HOH HOH A . I 5 HOH 81 288 288 HOH HOH A . I 5 HOH 82 289 289 HOH HOH A . I 5 HOH 83 290 290 HOH HOH A . I 5 HOH 84 291 291 HOH HOH A . I 5 HOH 85 292 292 HOH HOH A . I 5 HOH 86 293 293 HOH HOH A . I 5 HOH 87 294 294 HOH HOH A . I 5 HOH 88 295 295 HOH HOH A . I 5 HOH 89 296 296 HOH HOH A . I 5 HOH 90 297 297 HOH HOH A . I 5 HOH 91 298 298 HOH HOH A . I 5 HOH 92 299 299 HOH HOH A . I 5 HOH 93 300 300 HOH HOH A . I 5 HOH 94 301 301 HOH HOH A . I 5 HOH 95 302 302 HOH HOH A . I 5 HOH 96 303 303 HOH HOH A . I 5 HOH 97 304 304 HOH HOH A . I 5 HOH 98 305 305 HOH HOH A . I 5 HOH 99 306 306 HOH HOH A . I 5 HOH 100 307 307 HOH HOH A . I 5 HOH 101 308 308 HOH HOH A . I 5 HOH 102 309 309 HOH HOH A . I 5 HOH 103 310 310 HOH HOH A . I 5 HOH 104 311 311 HOH HOH A . I 5 HOH 105 312 312 HOH HOH A . I 5 HOH 106 313 313 HOH HOH A . I 5 HOH 107 314 314 HOH HOH A . I 5 HOH 108 315 315 HOH HOH A . I 5 HOH 109 316 316 HOH HOH A . I 5 HOH 110 317 317 HOH HOH A . I 5 HOH 111 318 318 HOH HOH A . I 5 HOH 112 319 319 HOH HOH A . I 5 HOH 113 320 320 HOH HOH A . I 5 HOH 114 321 321 HOH HOH A . I 5 HOH 115 322 322 HOH HOH A . I 5 HOH 116 323 323 HOH HOH A . I 5 HOH 117 324 324 HOH HOH A . I 5 HOH 118 325 325 HOH HOH A . I 5 HOH 119 326 326 HOH HOH A . I 5 HOH 120 327 327 HOH HOH A . I 5 HOH 121 328 328 HOH HOH A . I 5 HOH 122 329 329 HOH HOH A . I 5 HOH 123 330 330 HOH HOH A . I 5 HOH 124 331 331 HOH HOH A . I 5 HOH 125 332 332 HOH HOH A . I 5 HOH 126 333 333 HOH HOH A . I 5 HOH 127 334 334 HOH HOH A . I 5 HOH 128 335 335 HOH HOH A . I 5 HOH 129 336 336 HOH HOH A . I 5 HOH 130 337 337 HOH HOH A . I 5 HOH 131 338 338 HOH HOH A . I 5 HOH 132 339 339 HOH HOH A . I 5 HOH 133 340 340 HOH HOH A . I 5 HOH 134 341 341 HOH HOH A . I 5 HOH 135 342 342 HOH HOH A . I 5 HOH 136 343 343 HOH HOH A . I 5 HOH 137 344 344 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 34 ? MET SELENOMETHIONINE 3 A MSE 51 A MSE 50 ? MET SELENOMETHIONINE 4 A MSE 68 A MSE 67 ? MET SELENOMETHIONINE 5 A MSE 102 A MSE 101 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 12280 ? 2 MORE -285 ? 2 'SSA (A^2)' 29580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 55.8500000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 55.8500000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 202 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 26.8380 13.1430 17.5420 -0.1379 -0.1314 -0.1236 0.0097 -0.0111 0.0011 2.5393 1.7213 1.7071 -0.1055 -0.0823 0.3571 -0.0229 0.0920 -0.0691 0.1164 -0.1439 -0.0543 -0.0671 -0.0611 -0.0522 'X-RAY DIFFRACTION' 2 ? refined 15.8800 21.3450 12.3590 -0.1389 -0.1557 -0.1388 -0.0154 -0.0047 0.0336 1.8496 2.2309 0.9359 -0.5051 0.0385 0.5237 -0.0329 0.0420 -0.0090 0.0996 0.1670 0.0955 -0.1730 -0.1169 -0.0184 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 ? 1 1 A A 43 . . . . ? 'X-RAY DIFFRACTION' 44 ? 2 2 A A 149 . . . . ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3GY9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 22 ? NZ ? A LYS 23 NZ 2 1 Y 1 A GLU 40 ? CD ? A GLU 41 CD 3 1 Y 1 A GLU 40 ? OE1 ? A GLU 41 OE1 4 1 Y 1 A GLU 40 ? OE2 ? A GLU 41 OE2 5 1 Y 1 A GLN 117 ? CD ? A GLN 118 CD 6 1 Y 1 A GLN 117 ? OE1 ? A GLN 118 OE1 7 1 Y 1 A GLN 117 ? NE2 ? A GLN 118 NE2 8 1 Y 1 A LYS 134 ? CG ? A LYS 135 CG 9 1 Y 1 A LYS 134 ? CD ? A LYS 135 CD 10 1 Y 1 A LYS 134 ? CE ? A LYS 135 CE 11 1 Y 1 A LYS 134 ? NZ ? A LYS 135 NZ 12 1 Y 1 A ASP 146 ? CG ? A ASP 147 CG 13 1 Y 1 A ASP 146 ? OD1 ? A ASP 147 OD1 14 1 Y 1 A ASP 146 ? OD2 ? A ASP 147 OD2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COENZYME A' COA 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 water HOH #