HEADER TRANSFERASE 03-APR-09 3GY9 TITLE CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE (YP_001815201.1) FROM TITLE 2 EXIGUOBACTERIUM SP. 255-15 AT 1.52 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM 255-15; SOURCE 3 ORGANISM_TAXID: 262543; SOURCE 4 GENE: EXIG_2736, YP_001815201.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001815201.1, PUTATIVE ACETYLTRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, TRANSFERASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GY9 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GY9 1 REMARK LINK REVDAT 3 01-NOV-17 3GY9 1 REMARK REVDAT 2 13-JUL-11 3GY9 1 VERSN REVDAT 1 21-APR-09 3GY9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE JRNL TITL 2 (YP_001815201.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 1.52 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1301 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1343 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1184 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1832 ; 1.339 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2750 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 5.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;32.478 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;11.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1465 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 274 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 223 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1268 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 646 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 792 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 820 ; 1.844 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 319 ; 0.363 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1235 ; 2.432 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 619 ; 3.669 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 588 ; 5.012 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8380 13.1430 17.5420 REMARK 3 T TENSOR REMARK 3 T11: -0.1379 T22: -0.1314 REMARK 3 T33: -0.1236 T12: 0.0097 REMARK 3 T13: -0.0111 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.5393 L22: 1.7213 REMARK 3 L33: 1.7071 L12: -0.1055 REMARK 3 L13: -0.0823 L23: 0.3571 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.1164 S13: -0.1439 REMARK 3 S21: -0.0671 S22: 0.0920 S23: -0.0543 REMARK 3 S31: -0.0611 S32: -0.0522 S33: -0.0691 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8800 21.3450 12.3590 REMARK 3 T TENSOR REMARK 3 T11: -0.1389 T22: -0.1557 REMARK 3 T33: -0.1388 T12: -0.0154 REMARK 3 T13: -0.0047 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.8496 L22: 2.2309 REMARK 3 L33: 0.9359 L12: -0.5051 REMARK 3 L13: 0.0385 L23: 0.5237 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.0996 S13: 0.1670 REMARK 3 S21: -0.1730 S22: 0.0420 S23: 0.0955 REMARK 3 S31: -0.1169 S32: -0.0184 S33: -0.0090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. 5. REMARK 3 ACETYL COENZYME A WAS INCLUDED AS AN ADDITIVE FOR REMARK 3 CRYSTALLIZATION. WE SEE NO DENSITY FOR THE ACETYL GROUP AND HAVE REMARK 3 MODELED IT IN THE STRUCTURE AS COENZYME A. THE PANTHOTHENATE AND REMARK 3 BETA-MERCAPTOETHYLAMINE MOIETIES OF THE CO-A ARE DISORDERED AND REMARK 3 HAVE BEEN MODELED IN TWO CONFORMATIONS. THE PEPTIDE LINKING THE REMARK 3 PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE IN CONFORMER A HAS REMARK 3 BEEN BUILT IN A DIFFERENT ORIENTATION THAT IN THE MODEL FOR THE REMARK 3 RELATED PH 6 STRUCTURE. WHILE THIS APPEARS PLAUSIBLE, GIVEN THE REMARK 3 AMBIGUITY IN THE DENSITY FOR THIS REGION, NO CONCLUSIONS SHOULD REMARK 3 BE DRAWN WITH HIGH CONFIDENCE. 6. FOUR SULFATE IONS AND TWO REMARK 3 GLYCEROL MOLECULES FROM THE CRYSTALLIZATION AND CRYOPROTECTION REMARK 3 CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. ONE OF THE REMARK 3 SULFATE MOLECULES, A204, WAS MODELED WITH PARTIAL OCCUPANCY IN REMARK 3 TWO ALTERNATE POSITIONS AT THE PUTATIVE ACTIVE SITE. ASSIGNMENT REMARK 3 OF THIS ELECTRON DENSITY TO A DISORDERED SULFATE IS TENTATIVE. REMARK 3 7. LOOPS 131-134 AND 70-73 ARE DISORDERED. REMARK 4 REMARK 4 3GY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979032 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25437 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 27.146 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.970 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE RMERGE AND STATISTICS REPORTED HERE BY REMARK 200 XSCALE ARE BASED ON TREATING FRIEDEL PAIRS AS SEPARATE REMARK 200 REFLECTIONS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2M AMMONIUM SULFATE, 0.1M BICINE PH REMARK 280 9.0, ADDITIVE: 0.001 M ACETYL CO-ENZYME A, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.21500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.86500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.21500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.86500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.21500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.86500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.21500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -285.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.85000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 55.85000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 NZ REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 GLN A 117 CD OE1 NE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ASP A 146 CG OD1 OD2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379362 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GY9 A 1 149 UNP B1YEL6 B1YEL6_EXIS2 1 149 SEQADV 3GY9 GLY A 0 UNP B1YEL6 EXPRESSION TAG SEQRES 1 A 150 GLY MSE ASP VAL THR ILE GLU ARG VAL ASN ASP PHE ASP SEQRES 2 A 150 GLY TYR ASN TRP LEU PRO LEU LEU ALA LYS SER SER GLN SEQRES 3 A 150 GLU GLY PHE GLN LEU VAL GLU ARG MSE LEU ARG ASN ARG SEQRES 4 A 150 ARG GLU GLU SER PHE GLN GLU ASP GLY GLU ALA MSE PHE SEQRES 5 A 150 VAL ALA LEU SER THR THR ASN GLN VAL LEU ALA CYS GLY SEQRES 6 A 150 GLY TYR MSE LYS GLN SER GLY GLN ALA ARG THR GLY ARG SEQRES 7 A 150 ILE ARG HIS VAL TYR VAL LEU PRO GLU ALA ARG SER HIS SEQRES 8 A 150 GLY ILE GLY THR ALA LEU LEU GLU LYS ILE MSE SER GLU SEQRES 9 A 150 ALA PHE LEU THR TYR ASP ARG LEU VAL LEU TYR SER GLU SEQRES 10 A 150 GLN ALA ASP PRO PHE TYR GLN GLY LEU GLY PHE GLN LEU SEQRES 11 A 150 VAL SER GLY GLU LYS ILE THR HIS THR LEU ASP LYS THR SEQRES 12 A 150 ALA PHE ALA ASP SER ASN ARG MODRES 3GY9 MSE A 1 MET SELENOMETHIONINE MODRES 3GY9 MSE A 34 MET SELENOMETHIONINE MODRES 3GY9 MSE A 50 MET SELENOMETHIONINE MODRES 3GY9 MSE A 67 MET SELENOMETHIONINE MODRES 3GY9 MSE A 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 13 HET MSE A 50 8 HET MSE A 67 8 HET MSE A 101 8 HET COA A 201 58 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 10 HET SO4 A 205 5 HET GOL A 206 6 HET GOL A 207 6 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *137(H2 O) HELIX 1 1 ASP A 10 TYR A 14 5 5 HELIX 2 2 TRP A 16 GLU A 26 1 11 HELIX 3 3 GLN A 29 ASN A 37 1 9 HELIX 4 4 PRO A 85 ARG A 88 5 4 HELIX 5 5 GLY A 91 PHE A 105 1 15 HELIX 6 6 ALA A 118 LEU A 125 1 8 HELIX 7 7 LYS A 141 SER A 147 1 7 SHEET 1 A 7 THR A 4 ARG A 7 0 SHEET 2 A 7 ALA A 49 LEU A 54 -1 O VAL A 52 N GLU A 6 SHEET 3 A 7 VAL A 60 LYS A 68 -1 O LEU A 61 N ALA A 53 SHEET 4 A 7 THR A 75 VAL A 83 -1 O ARG A 77 N MSE A 67 SHEET 5 A 7 ARG A 110 LEU A 113 1 O ARG A 110 N GLY A 76 SHEET 6 A 7 HIS A 137 ASP A 140 -1 O LEU A 139 N LEU A 111 SHEET 7 A 7 GLN A 128 LEU A 129 -1 N GLN A 128 O THR A 138 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C ARG A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N LEU A 35 1555 1555 1.32 LINK C ALA A 49 N MSE A 50 1555 1555 1.34 LINK C MSE A 50 N PHE A 51 1555 1555 1.33 LINK C TYR A 66 N MSE A 67 1555 1555 1.32 LINK C MSE A 67 N LYS A 68 1555 1555 1.33 LINK C ILE A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N SER A 102 1555 1555 1.32 LINK S1PACOA A 201 S1PACOA A 201 1555 3655 2.04 SITE 1 AC1 19 GLN A 25 GLU A 26 VAL A 81 VAL A 83 SITE 2 AC1 19 ARG A 88 SER A 89 HIS A 90 GLY A 91 SITE 3 AC1 19 ILE A 92 GLY A 93 THR A 94 GLN A 117 SITE 4 AC1 19 ALA A 118 PHE A 121 HOH A 313 HOH A 320 SITE 5 AC1 19 HOH A 322 HOH A 323 HOH A 344 SITE 1 AC2 4 ASN A 15 GLN A 59 HOH A 213 HOH A 294 SITE 1 AC3 5 GLY A 27 PHE A 28 GLN A 29 LEU A 30 SITE 2 AC3 5 ARG A 33 SITE 1 AC4 9 ARG A 33 ARG A 77 ARG A 79 HIS A 80 SITE 2 AC4 9 TYR A 114 GLU A 133 HOH A 231 HOH A 331 SITE 3 AC4 9 HOH A 332 SITE 1 AC5 5 ARG A 33 ASN A 37 GLU A 41 ARG A 79 SITE 2 AC5 5 HOH A 221 SITE 1 AC6 5 GLU A 6 ARG A 7 ARG A 36 LYS A 99 SITE 2 AC6 5 HOH A 300 SITE 1 AC7 7 GLU A 40 SER A 42 GLU A 48 MSE A 67 SITE 2 AC7 7 HOH A 257 HOH A 291 HOH A 299 CRYST1 55.850 66.430 87.730 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011399 0.00000 HETATM 1 N MSE A 1 14.165 3.431 4.371 1.00 46.16 N HETATM 2 CA MSE A 1 14.786 2.672 5.498 1.00 46.00 C HETATM 3 C MSE A 1 13.970 2.801 6.779 1.00 42.25 C HETATM 4 O MSE A 1 13.506 3.897 7.128 1.00 43.07 O HETATM 5 CB MSE A 1 16.196 3.184 5.776 1.00 46.02 C HETATM 6 CG MSE A 1 17.231 2.672 4.820 1.00 46.80 C HETATM 7 SE MSE A 1 18.939 3.453 5.238 0.75 52.80 SE HETATM 8 CE MSE A 1 19.981 2.802 3.691 1.00 48.28 C