data_3GYA # _entry.id 3GYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GYA pdb_00003gya 10.2210/pdb3gya/pdb RCSB RCSB052457 ? ? WWPDB D_1000052457 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 379362 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GYA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative acetyltransferase (YP_001815201.1) from EXIGUOBACTERIUM SP. 255-15 at 1.62 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3GYA _cell.length_a 55.793 _cell.length_b 66.249 _cell.length_c 87.769 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GYA _symmetry.Int_Tables_number 23 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GCN5-related N-acetyltransferase' 17201.553 1 ? ? ? ? 2 non-polymer syn 'COENZYME A' 767.534 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DVTIERVNDFDGYNWLPLLAKSSQEGFQLVER(MSE)LRNRREESFQEDGEA(MSE)FVALSTTNQVLACGGY (MSE)KQSGQARTGRIRHVYVLPEARSHGIGTALLEKI(MSE)SEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHT LDKTAFADSNR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIR HVYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADSNR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 379362 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 VAL n 1 5 THR n 1 6 ILE n 1 7 GLU n 1 8 ARG n 1 9 VAL n 1 10 ASN n 1 11 ASP n 1 12 PHE n 1 13 ASP n 1 14 GLY n 1 15 TYR n 1 16 ASN n 1 17 TRP n 1 18 LEU n 1 19 PRO n 1 20 LEU n 1 21 LEU n 1 22 ALA n 1 23 LYS n 1 24 SER n 1 25 SER n 1 26 GLN n 1 27 GLU n 1 28 GLY n 1 29 PHE n 1 30 GLN n 1 31 LEU n 1 32 VAL n 1 33 GLU n 1 34 ARG n 1 35 MSE n 1 36 LEU n 1 37 ARG n 1 38 ASN n 1 39 ARG n 1 40 ARG n 1 41 GLU n 1 42 GLU n 1 43 SER n 1 44 PHE n 1 45 GLN n 1 46 GLU n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 ALA n 1 51 MSE n 1 52 PHE n 1 53 VAL n 1 54 ALA n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 THR n 1 59 ASN n 1 60 GLN n 1 61 VAL n 1 62 LEU n 1 63 ALA n 1 64 CYS n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 MSE n 1 69 LYS n 1 70 GLN n 1 71 SER n 1 72 GLY n 1 73 GLN n 1 74 ALA n 1 75 ARG n 1 76 THR n 1 77 GLY n 1 78 ARG n 1 79 ILE n 1 80 ARG n 1 81 HIS n 1 82 VAL n 1 83 TYR n 1 84 VAL n 1 85 LEU n 1 86 PRO n 1 87 GLU n 1 88 ALA n 1 89 ARG n 1 90 SER n 1 91 HIS n 1 92 GLY n 1 93 ILE n 1 94 GLY n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 LEU n 1 99 GLU n 1 100 LYS n 1 101 ILE n 1 102 MSE n 1 103 SER n 1 104 GLU n 1 105 ALA n 1 106 PHE n 1 107 LEU n 1 108 THR n 1 109 TYR n 1 110 ASP n 1 111 ARG n 1 112 LEU n 1 113 VAL n 1 114 LEU n 1 115 TYR n 1 116 SER n 1 117 GLU n 1 118 GLN n 1 119 ALA n 1 120 ASP n 1 121 PRO n 1 122 PHE n 1 123 TYR n 1 124 GLN n 1 125 GLY n 1 126 LEU n 1 127 GLY n 1 128 PHE n 1 129 GLN n 1 130 LEU n 1 131 VAL n 1 132 SER n 1 133 GLY n 1 134 GLU n 1 135 LYS n 1 136 ILE n 1 137 THR n 1 138 HIS n 1 139 THR n 1 140 LEU n 1 141 ASP n 1 142 LYS n 1 143 THR n 1 144 ALA n 1 145 PHE n 1 146 ALA n 1 147 ASP n 1 148 SER n 1 149 ASN n 1 150 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Exig_2736, YP_001815201.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Exiguobacterium sibiricum 255-15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262543 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B1YEL6_EXIS2 _struct_ref.pdbx_db_accession B1YEL6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRH VYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADSNR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GYA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B1YEL6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3GYA _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B1YEL6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GYA # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;3.2M ammonium sulfate, 0.1M MES pH 6.0, Additive: 0.001 M acetyl Co-enzyme A, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'Vertical focusing mirror' _diffrn_detector.pdbx_collection_date 2008-07-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(311) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.918370 1.0 2 0.979394 1.0 3 0.978882 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_wavelength_list 0.918370,0.979394,0.978882 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GYA _reflns.d_resolution_high 1.62 _reflns.d_resolution_low 27.896 _reflns.number_obs 20813 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_redundancy 3.900 _reflns.percent_possible_obs 99.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 19.242 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.62 1.66 ? 6086 ? 0.668 1.9 0.668 ? 4.00 ? 1514 98.40 1 1 1.66 1.71 ? 5911 ? 0.549 2.4 0.549 ? 4.00 ? 1466 98.40 2 1 1.71 1.76 ? 5803 ? 0.462 2.9 0.462 ? 4.00 ? 1443 98.70 3 1 1.76 1.81 ? 5572 ? 0.356 3.8 0.356 ? 4.00 ? 1392 98.70 4 1 1.81 1.87 ? 5412 ? 0.291 4.6 0.291 ? 4.00 ? 1354 98.90 5 1 1.87 1.94 ? 5030 ? 0.340 5.2 0.340 ? 3.90 ? 1299 98.80 6 1 1.94 2.01 ? 5041 ? 0.176 7.4 0.176 ? 4.00 ? 1273 98.80 7 1 2.01 2.09 ? 4822 ? 0.133 9.7 0.133 ? 3.90 ? 1224 99.40 8 1 2.09 2.18 ? 4625 ? 0.105 12.0 0.105 ? 3.90 ? 1179 99.50 9 1 2.18 2.29 ? 4180 ? 0.145 12.2 0.145 ? 3.70 ? 1125 98.60 10 1 2.29 2.41 ? 4218 ? 0.082 15.7 0.082 ? 3.90 ? 1072 99.70 11 1 2.41 2.56 ? 4028 ? 0.069 17.7 0.069 ? 3.90 ? 1036 99.40 12 1 2.56 2.74 ? 3707 ? 0.067 18.9 0.067 ? 3.90 ? 959 99.80 13 1 2.74 2.96 ? 3461 ? 0.061 21.7 0.061 ? 3.80 ? 911 99.70 14 1 2.96 3.24 ? 3134 ? 0.053 25.5 0.053 ? 3.70 ? 837 99.80 15 1 3.24 3.62 ? 2773 ? 0.045 28.8 0.045 ? 3.70 ? 756 99.00 16 1 3.62 4.18 ? 2197 ? 0.045 29.3 0.045 ? 3.30 ? 663 98.30 17 1 4.18 5.12 ? 2272 ? 0.038 34.6 0.038 ? 3.90 ? 584 99.90 18 1 5.12 7.24 ? 1715 ? 0.042 32.4 0.042 ? 3.80 ? 455 99.90 19 1 7.24 27.90 ? 924 ? 0.037 31.6 ? ? 3.40 ? 271 97.60 20 1 # _refine.entry_id 3GYA _refine.ls_d_res_high 1.620 _refine.ls_d_res_low 27.896 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.600 _refine.ls_number_reflns_obs 20778 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. 5. ACETYL COENZYME A WAS INCLUDED AS AN ADDITIVE FOR CRYSTALLIZATION. WE SEE NO DENSITY FOR THE ACETYL GROUP AND HAVE MODELED IT IN THE STRUCTURE AS COENZYME A. THE PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE MOIETIES OF THE CO-A ARE DISORDERED AND A DOMINANT CONFORMATION HAS BEEN MODELED. THE PEPTIDE LINKING THE PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE IN CONFORMER A HAS BEEN BUILT IN A DIFFERENT ORIENTATION THAN IN THE MODEL FOR THE RELATED PH 9 STRUCTURE. WHILE THIS APPEARS PLAUSIBLE, GIVEN THE AMBIGUITY IN THE DENSITY FOR THIS REGION, NO CONCLUSIONS SHOULD BE DRAWN WITH HIGH CONFIDENCE. 6. THREE SULFATE IONS AND ONE ETHYLENE GLYCOL MOLECULE FROM THE CRYSTALLIZATION AND CRYOPROTECTION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_R_work 0.179 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.204 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1069 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.794 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.410 _refine.aniso_B[2][2] -0.070 _refine.aniso_B[3][3] 0.490 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.092 _refine.overall_SU_ML 0.070 _refine.overall_SU_B 3.851 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 82.80 _refine.B_iso_min 13.19 _refine.occupancy_max 1.00 _refine.occupancy_min 0.35 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 1376 _refine_hist.d_res_high 1.620 _refine_hist.d_res_low 27.896 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1331 0.014 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 890 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1818 1.443 2.006 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2165 0.921 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 170 5.705 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 64 33.134 23.750 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 223 13.033 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 17.459 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 193 0.079 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1481 0.005 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 278 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 233 0.202 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 981 0.194 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 632 0.178 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 719 0.083 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 120 0.157 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 13 0.475 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 19 0.363 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 11 0.187 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 838 1.869 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 320 0.471 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1256 2.599 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 594 4.359 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 554 5.684 11.000 ? ? # _refine_ls_shell.d_res_high 1.620 _refine_ls_shell.d_res_low 1.662 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.180 _refine_ls_shell.number_reflns_R_work 1432 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1513 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GYA _struct.title 'Crystal structure of putative acetyltransferase (YP_001815201.1) from EXIGUOBACTERIUM SP. 255-15 at 1.62 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001815201.1, putative acetyltransferase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Transferase, Unknown function ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3GYA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 11 ? TYR A 15 ? ASP A 10 TYR A 14 5 ? 5 HELX_P HELX_P2 2 TRP A 17 ? GLU A 27 ? TRP A 16 GLU A 26 1 ? 11 HELX_P HELX_P3 3 GLN A 30 ? ASN A 38 ? GLN A 29 ASN A 37 1 ? 9 HELX_P HELX_P4 4 PRO A 86 ? ARG A 89 ? PRO A 85 ARG A 88 5 ? 4 HELX_P HELX_P5 5 GLY A 92 ? PHE A 106 ? GLY A 91 PHE A 105 1 ? 15 HELX_P HELX_P6 6 ALA A 119 ? LEU A 126 ? ALA A 118 LEU A 125 1 ? 8 HELX_P HELX_P7 7 LYS A 142 ? SER A 148 ? LYS A 141 SER A 147 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A ASP 3 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A ARG 34 C ? ? ? 1_555 A MSE 35 N ? ? A ARG 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A MSE 35 C ? ? ? 1_555 A LEU 36 N ? ? A MSE 34 A LEU 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A ALA 50 C ? ? ? 1_555 A MSE 51 N ? ? A ALA 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 51 C ? ? ? 1_555 A PHE 52 N ? ? A MSE 50 A PHE 51 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? A TYR 67 C ? ? ? 1_555 A MSE 68 N ? ? A TYR 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A MSE 68 C ? ? ? 1_555 A LYS 69 N ? ? A MSE 67 A LYS 68 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ILE 101 C ? ? ? 1_555 A MSE 102 N ? ? A ILE 100 A MSE 101 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? A MSE 102 C ? ? ? 1_555 A SER 103 N ? ? A MSE 101 A SER 102 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale10 covale none ? B COA . S1P ? ? ? 1_555 B COA . S1P ? ? A COA 150 A COA 150 3_655 ? ? ? ? ? ? ? 2.064 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? ARG A 8 ? THR A 4 ARG A 7 A 2 ALA A 50 ? LEU A 55 ? ALA A 49 LEU A 54 A 3 VAL A 61 ? LYS A 69 ? VAL A 60 LYS A 68 A 4 THR A 76 ? VAL A 84 ? THR A 75 VAL A 83 A 5 ARG A 111 ? LEU A 114 ? ARG A 110 LEU A 113 A 6 HIS A 138 ? ASP A 141 ? HIS A 137 ASP A 140 A 7 GLN A 129 ? LEU A 130 ? GLN A 128 LEU A 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 4 O LEU A 55 ? O LEU A 54 A 2 3 N ALA A 54 ? N ALA A 53 O LEU A 62 ? O LEU A 61 A 3 4 N MSE A 68 ? N MSE A 67 O ARG A 78 ? O ARG A 77 A 4 5 N GLY A 77 ? N GLY A 76 O ARG A 111 ? O ARG A 110 A 5 6 N LEU A 112 ? N LEU A 111 O LEU A 140 ? O LEU A 139 A 6 7 O THR A 139 ? O THR A 138 N GLN A 129 ? N GLN A 128 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A COA 150 ? 16 'BINDING SITE FOR RESIDUE COA A 150' AC2 Software A SO4 151 ? 7 'BINDING SITE FOR RESIDUE SO4 A 151' AC3 Software A SO4 152 ? 4 'BINDING SITE FOR RESIDUE SO4 A 152' AC4 Software A SO4 153 ? 8 'BINDING SITE FOR RESIDUE SO4 A 153' AC5 Software A EDO 154 ? 8 'BINDING SITE FOR RESIDUE EDO A 154' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLN A 26 ? GLN A 25 . ? 3_655 ? 2 AC1 16 PHE A 29 ? PHE A 28 . ? 3_655 ? 3 AC1 16 VAL A 84 ? VAL A 83 . ? 1_555 ? 4 AC1 16 ARG A 89 ? ARG A 88 . ? 1_555 ? 5 AC1 16 SER A 90 ? SER A 89 . ? 1_555 ? 6 AC1 16 HIS A 91 ? HIS A 90 . ? 1_555 ? 7 AC1 16 GLY A 92 ? GLY A 91 . ? 1_555 ? 8 AC1 16 ILE A 93 ? ILE A 92 . ? 1_555 ? 9 AC1 16 GLY A 94 ? GLY A 93 . ? 1_555 ? 10 AC1 16 THR A 95 ? THR A 94 . ? 1_555 ? 11 AC1 16 GLN A 118 ? GLN A 117 . ? 1_555 ? 12 AC1 16 PHE A 122 ? PHE A 121 . ? 1_555 ? 13 AC1 16 HOH G . ? HOH A 155 . ? 1_555 ? 14 AC1 16 HOH G . ? HOH A 198 . ? 1_555 ? 15 AC1 16 HOH G . ? HOH A 243 . ? 1_555 ? 16 AC1 16 HOH G . ? HOH A 251 . ? 1_555 ? 17 AC2 7 ARG A 34 ? ARG A 33 . ? 1_555 ? 18 AC2 7 ARG A 80 ? ARG A 79 . ? 1_555 ? 19 AC2 7 HIS A 81 ? HIS A 80 . ? 1_555 ? 20 AC2 7 EDO F . ? EDO A 154 . ? 1_555 ? 21 AC2 7 HOH G . ? HOH A 175 . ? 1_555 ? 22 AC2 7 HOH G . ? HOH A 257 . ? 1_555 ? 23 AC2 7 HOH G . ? HOH A 282 . ? 1_555 ? 24 AC3 4 PHE A 29 ? PHE A 28 . ? 1_555 ? 25 AC3 4 GLN A 30 ? GLN A 29 . ? 1_555 ? 26 AC3 4 LEU A 31 ? LEU A 30 . ? 1_555 ? 27 AC3 4 ARG A 34 ? ARG A 33 . ? 1_555 ? 28 AC4 8 ASN A 16 ? ASN A 15 . ? 2_655 ? 29 AC4 8 ASN A 16 ? ASN A 15 . ? 1_555 ? 30 AC4 8 ASN A 59 ? ASN A 58 . ? 1_555 ? 31 AC4 8 GLN A 60 ? GLN A 59 . ? 2_655 ? 32 AC4 8 GLN A 60 ? GLN A 59 . ? 1_555 ? 33 AC4 8 HOH G . ? HOH A 157 . ? 1_555 ? 34 AC4 8 HOH G . ? HOH A 157 . ? 2_655 ? 35 AC4 8 HOH G . ? HOH A 184 . ? 2_655 ? 36 AC5 8 LEU A 31 ? LEU A 30 . ? 1_555 ? 37 AC5 8 ILE A 79 ? ILE A 78 . ? 1_555 ? 38 AC5 8 ARG A 80 ? ARG A 79 . ? 1_555 ? 39 AC5 8 HIS A 81 ? HIS A 80 . ? 1_555 ? 40 AC5 8 VAL A 82 ? VAL A 81 . ? 1_555 ? 41 AC5 8 TYR A 115 ? TYR A 114 . ? 1_555 ? 42 AC5 8 TYR A 123 ? TYR A 122 . ? 1_555 ? 43 AC5 8 SO4 C . ? SO4 A 151 . ? 1_555 ? # _atom_sites.entry_id 3GYA _atom_sites.fract_transf_matrix[1][1] 0.017923 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011394 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ASN 10 9 9 ASN ASN A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 MSE 35 34 34 MSE MSE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 MSE 51 50 50 MSE MSE A . n A 1 52 PHE 52 51 51 PHE PHE A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 ASN 59 58 58 ASN ASN A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 TYR 67 66 66 TYR TYR A . n A 1 68 MSE 68 67 67 MSE MSE A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 GLN 73 72 72 GLN GLN A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 MSE 102 101 101 MSE MSE A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 TYR 109 108 108 TYR TYR A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ARG 111 110 110 ARG ARG A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 TYR 115 114 114 TYR TYR A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 PRO 121 120 120 PRO PRO A . n A 1 122 PHE 122 121 121 PHE PHE A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 GLN 124 123 123 GLN GLN A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 PHE 128 127 127 PHE PHE A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 LYS 135 134 134 LYS LYS A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 HIS 138 137 137 HIS HIS A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 SER 148 147 147 SER SER A . n A 1 149 ASN 149 148 ? ? ? A . n A 1 150 ARG 150 149 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA 1 150 1 COA COA A . C 3 SO4 1 151 2 SO4 SO4 A . D 3 SO4 1 152 3 SO4 SO4 A . E 3 SO4 1 153 4 SO4 SO4 A . F 4 EDO 1 154 5 EDO EDO A . G 5 HOH 1 155 6 HOH HOH A . G 5 HOH 2 156 7 HOH HOH A . G 5 HOH 3 157 8 HOH HOH A . G 5 HOH 4 158 9 HOH HOH A . G 5 HOH 5 159 10 HOH HOH A . G 5 HOH 6 160 11 HOH HOH A . G 5 HOH 7 161 12 HOH HOH A . G 5 HOH 8 162 13 HOH HOH A . G 5 HOH 9 163 14 HOH HOH A . G 5 HOH 10 164 15 HOH HOH A . G 5 HOH 11 165 16 HOH HOH A . G 5 HOH 12 166 17 HOH HOH A . G 5 HOH 13 167 18 HOH HOH A . G 5 HOH 14 168 19 HOH HOH A . G 5 HOH 15 169 20 HOH HOH A . G 5 HOH 16 170 21 HOH HOH A . G 5 HOH 17 171 22 HOH HOH A . G 5 HOH 18 172 23 HOH HOH A . G 5 HOH 19 173 24 HOH HOH A . G 5 HOH 20 174 25 HOH HOH A . G 5 HOH 21 175 26 HOH HOH A . G 5 HOH 22 176 27 HOH HOH A . G 5 HOH 23 177 28 HOH HOH A . G 5 HOH 24 178 29 HOH HOH A . G 5 HOH 25 179 30 HOH HOH A . G 5 HOH 26 180 31 HOH HOH A . G 5 HOH 27 181 32 HOH HOH A . G 5 HOH 28 182 33 HOH HOH A . G 5 HOH 29 183 34 HOH HOH A . G 5 HOH 30 184 35 HOH HOH A . G 5 HOH 31 185 36 HOH HOH A . G 5 HOH 32 186 37 HOH HOH A . G 5 HOH 33 187 38 HOH HOH A . G 5 HOH 34 188 39 HOH HOH A . G 5 HOH 35 189 40 HOH HOH A . G 5 HOH 36 190 41 HOH HOH A . G 5 HOH 37 191 42 HOH HOH A . G 5 HOH 38 192 43 HOH HOH A . G 5 HOH 39 193 44 HOH HOH A . G 5 HOH 40 194 45 HOH HOH A . G 5 HOH 41 195 46 HOH HOH A . G 5 HOH 42 196 47 HOH HOH A . G 5 HOH 43 197 48 HOH HOH A . G 5 HOH 44 198 49 HOH HOH A . G 5 HOH 45 199 50 HOH HOH A . G 5 HOH 46 200 51 HOH HOH A . G 5 HOH 47 201 52 HOH HOH A . G 5 HOH 48 202 53 HOH HOH A . G 5 HOH 49 203 54 HOH HOH A . G 5 HOH 50 204 55 HOH HOH A . G 5 HOH 51 205 56 HOH HOH A . G 5 HOH 52 206 57 HOH HOH A . G 5 HOH 53 207 58 HOH HOH A . G 5 HOH 54 208 59 HOH HOH A . G 5 HOH 55 209 60 HOH HOH A . G 5 HOH 56 210 61 HOH HOH A . G 5 HOH 57 211 62 HOH HOH A . G 5 HOH 58 212 63 HOH HOH A . G 5 HOH 59 213 64 HOH HOH A . G 5 HOH 60 214 65 HOH HOH A . G 5 HOH 61 215 66 HOH HOH A . G 5 HOH 62 216 67 HOH HOH A . G 5 HOH 63 217 68 HOH HOH A . G 5 HOH 64 218 69 HOH HOH A . G 5 HOH 65 219 70 HOH HOH A . G 5 HOH 66 220 71 HOH HOH A . G 5 HOH 67 221 72 HOH HOH A . G 5 HOH 68 222 73 HOH HOH A . G 5 HOH 69 223 74 HOH HOH A . G 5 HOH 70 224 75 HOH HOH A . G 5 HOH 71 225 76 HOH HOH A . G 5 HOH 72 226 77 HOH HOH A . G 5 HOH 73 227 78 HOH HOH A . G 5 HOH 74 228 79 HOH HOH A . G 5 HOH 75 229 80 HOH HOH A . G 5 HOH 76 230 81 HOH HOH A . G 5 HOH 77 231 82 HOH HOH A . G 5 HOH 78 232 83 HOH HOH A . G 5 HOH 79 233 84 HOH HOH A . G 5 HOH 80 234 85 HOH HOH A . G 5 HOH 81 235 86 HOH HOH A . G 5 HOH 82 236 87 HOH HOH A . G 5 HOH 83 237 88 HOH HOH A . G 5 HOH 84 238 89 HOH HOH A . G 5 HOH 85 239 90 HOH HOH A . G 5 HOH 86 240 91 HOH HOH A . G 5 HOH 87 241 92 HOH HOH A . G 5 HOH 88 242 93 HOH HOH A . G 5 HOH 89 243 94 HOH HOH A . G 5 HOH 90 244 95 HOH HOH A . G 5 HOH 91 245 96 HOH HOH A . G 5 HOH 92 246 97 HOH HOH A . G 5 HOH 93 247 98 HOH HOH A . G 5 HOH 94 248 99 HOH HOH A . G 5 HOH 95 249 100 HOH HOH A . G 5 HOH 96 250 101 HOH HOH A . G 5 HOH 97 251 102 HOH HOH A . G 5 HOH 98 252 103 HOH HOH A . G 5 HOH 99 253 104 HOH HOH A . G 5 HOH 100 254 105 HOH HOH A . G 5 HOH 101 255 106 HOH HOH A . G 5 HOH 102 256 107 HOH HOH A . G 5 HOH 103 257 108 HOH HOH A . G 5 HOH 104 258 109 HOH HOH A . G 5 HOH 105 259 110 HOH HOH A . G 5 HOH 106 260 111 HOH HOH A . G 5 HOH 107 261 112 HOH HOH A . G 5 HOH 108 262 113 HOH HOH A . G 5 HOH 109 263 114 HOH HOH A . G 5 HOH 110 264 115 HOH HOH A . G 5 HOH 111 265 116 HOH HOH A . G 5 HOH 112 266 117 HOH HOH A . G 5 HOH 113 267 118 HOH HOH A . G 5 HOH 114 268 119 HOH HOH A . G 5 HOH 115 269 120 HOH HOH A . G 5 HOH 116 270 121 HOH HOH A . G 5 HOH 117 271 122 HOH HOH A . G 5 HOH 118 272 123 HOH HOH A . G 5 HOH 119 273 124 HOH HOH A . G 5 HOH 120 274 125 HOH HOH A . G 5 HOH 121 275 126 HOH HOH A . G 5 HOH 122 276 127 HOH HOH A . G 5 HOH 123 277 128 HOH HOH A . G 5 HOH 124 278 129 HOH HOH A . G 5 HOH 125 279 130 HOH HOH A . G 5 HOH 126 280 131 HOH HOH A . G 5 HOH 127 281 132 HOH HOH A . G 5 HOH 128 282 133 HOH HOH A . G 5 HOH 129 283 134 HOH HOH A . G 5 HOH 130 284 135 HOH HOH A . G 5 HOH 131 285 136 HOH HOH A . G 5 HOH 132 286 137 HOH HOH A . G 5 HOH 133 287 138 HOH HOH A . G 5 HOH 134 288 139 HOH HOH A . G 5 HOH 135 289 140 HOH HOH A . G 5 HOH 136 290 141 HOH HOH A . G 5 HOH 137 291 142 HOH HOH A . G 5 HOH 138 292 143 HOH HOH A . G 5 HOH 139 293 144 HOH HOH A . G 5 HOH 140 294 145 HOH HOH A . G 5 HOH 141 295 146 HOH HOH A . G 5 HOH 142 296 147 HOH HOH A . G 5 HOH 143 297 148 HOH HOH A . G 5 HOH 144 298 149 HOH HOH A . G 5 HOH 145 299 150 HOH HOH A . G 5 HOH 146 300 151 HOH HOH A . G 5 HOH 147 301 152 HOH HOH A . G 5 HOH 148 302 153 HOH HOH A . G 5 HOH 149 303 154 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 34 ? MET SELENOMETHIONINE 3 A MSE 51 A MSE 50 ? MET SELENOMETHIONINE 4 A MSE 68 A MSE 67 ? MET SELENOMETHIONINE 5 A MSE 102 A MSE 101 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2690 ? 2 MORE -101 ? 2 'SSA (A^2)' 15380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 55.7930000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 153 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 25.0480 9.1440 15.7870 -0.1231 -0.1011 -0.0919 -0.0002 -0.0206 -0.0171 2.7756 1.9786 0.5710 0.3059 0.3515 -0.0462 -0.0756 0.1190 -0.0434 0.0933 -0.2686 -0.0014 -0.0136 0.0567 -0.0505 'X-RAY DIFFRACTION' 2 ? refined 21.9840 17.6720 16.4240 -0.1466 -0.1641 -0.1550 0.0023 0.0015 0.0195 2.4270 1.6710 0.8092 -0.1157 0.2845 0.4200 -0.1152 0.1163 -0.0010 -0.0984 0.1164 0.0406 0.0545 -0.0081 0.0574 'X-RAY DIFFRACTION' 3 ? refined 13.3200 26.2400 9.9220 -0.1196 -0.1523 -0.0580 -0.0036 -0.0368 0.0668 2.1888 2.6777 2.5413 -0.2481 -0.2392 0.6649 -0.0904 0.0201 0.0703 0.1163 0.4040 0.1174 -0.3085 -0.2480 -0.1069 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 ? 1 1 A A 27 . . . . ? 'X-RAY DIFFRACTION' 28 ? 2 2 A A 95 . . . . ? 'X-RAY DIFFRACTION' 96 ? 3 3 A A 147 . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3GYA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SO4 _pdbx_validate_close_contact.auth_seq_id_1 151 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 257 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 74 ? A 55.20 18.31 2 1 SER A 131 ? B -103.18 76.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 40 ? CD ? A GLU 41 CD 2 1 Y 1 A GLU 40 ? OE1 ? A GLU 41 OE1 3 1 Y 1 A GLU 40 ? OE2 ? A GLU 41 OE2 4 1 Y 1 A GLN 117 ? OE1 ? A GLN 118 OE1 5 1 Y 1 A GLN 117 ? NE2 ? A GLN 118 NE2 6 1 Y 1 A LYS 134 ? CD ? A LYS 135 CD 7 1 Y 1 A LYS 134 ? CE ? A LYS 135 CE 8 1 Y 1 A LYS 134 ? NZ ? A LYS 135 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 148 ? A ASN 149 3 1 Y 1 A ARG 149 ? A ARG 150 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COENZYME A' COA 3 'SULFATE ION' SO4 4 1,2-ETHANEDIOL EDO 5 water HOH #