HEADER TRANSFERASE 03-APR-09 3GYA TITLE CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE (YP_001815201.1) FROM TITLE 2 EXIGUOBACTERIUM SP. 255-15 AT 1.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM 255-15; SOURCE 3 ORGANISM_TAXID: 262543; SOURCE 4 GENE: EXIG_2736, YP_001815201.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001815201.1, PUTATIVE ACETYLTRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, TRANSFERASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GYA 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GYA 1 REMARK LINK REVDAT 3 01-NOV-17 3GYA 1 REMARK REVDAT 2 13-JUL-11 3GYA 1 VERSN REVDAT 1 21-APR-09 3GYA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE JRNL TITL 2 (YP_001815201.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 1.62 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 20778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1331 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1818 ; 1.443 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2165 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 5.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;33.134 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 223 ;13.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.459 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1481 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 278 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 233 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 981 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 632 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 719 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.475 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.363 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 838 ; 1.869 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 320 ; 0.471 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 2.599 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 594 ; 4.359 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 554 ; 5.684 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0480 9.1440 15.7870 REMARK 3 T TENSOR REMARK 3 T11: -0.1231 T22: -0.1011 REMARK 3 T33: -0.0919 T12: -0.0002 REMARK 3 T13: -0.0206 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.7756 L22: 1.9786 REMARK 3 L33: 0.5710 L12: 0.3059 REMARK 3 L13: 0.3515 L23: -0.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.0933 S13: -0.2686 REMARK 3 S21: -0.0136 S22: 0.1190 S23: -0.0014 REMARK 3 S31: 0.0567 S32: -0.0505 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9840 17.6720 16.4240 REMARK 3 T TENSOR REMARK 3 T11: -0.1466 T22: -0.1641 REMARK 3 T33: -0.1550 T12: 0.0023 REMARK 3 T13: 0.0015 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.4270 L22: 1.6710 REMARK 3 L33: 0.8092 L12: -0.1157 REMARK 3 L13: 0.2845 L23: 0.4200 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: -0.0984 S13: 0.1164 REMARK 3 S21: 0.0545 S22: 0.1163 S23: 0.0406 REMARK 3 S31: -0.0081 S32: 0.0574 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3200 26.2400 9.9220 REMARK 3 T TENSOR REMARK 3 T11: -0.1196 T22: -0.1523 REMARK 3 T33: -0.0580 T12: -0.0036 REMARK 3 T13: -0.0368 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 2.1888 L22: 2.6777 REMARK 3 L33: 2.5413 L12: -0.2481 REMARK 3 L13: -0.2392 L23: 0.6649 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: 0.1163 S13: 0.4040 REMARK 3 S21: -0.3085 S22: 0.0201 S23: 0.1174 REMARK 3 S31: -0.2480 S32: -0.1069 S33: 0.0703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET- REMARK 3 INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TLS REMARK 3 GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. 5. ACETYL REMARK 3 COENZYME A WAS INCLUDED AS AN ADDITIVE FOR CRYSTALLIZATION. WE REMARK 3 SEE NO DENSITY FOR THE ACETYL GROUP AND HAVE MODELED IT IN THE REMARK 3 STRUCTURE AS COENZYME A. THE PANTHOTHENATE AND BETA- REMARK 3 MERCAPTOETHYLAMINE MOIETIES OF THE CO-A ARE DISORDERED AND A REMARK 3 DOMINANT CONFORMATION HAS BEEN MODELED. THE PEPTIDE LINKING THE REMARK 3 PANTHOTHENATE AND BETA-MERCAPTOETHYLAMINE IN CONFORMER A HAS REMARK 3 BEEN BUILT IN A DIFFERENT ORIENTATION THAN IN THE MODEL FOR THE REMARK 3 RELATED PH 9 STRUCTURE. WHILE THIS APPEARS PLAUSIBLE, GIVEN THE REMARK 3 AMBIGUITY IN THE DENSITY FOR THIS REGION, NO CONCLUSIONS SHOULD REMARK 3 BE DRAWN WITH HIGH CONFIDENCE. 6. THREE SULFATE IONS AND ONE REMARK 3 ETHYLENE GLYCOL MOLECULE FROM THE CRYSTALLIZATION AND REMARK 3 CRYOPROTECTION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3GYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370,0.979394,0.978882 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20813 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 27.896 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : 0.66800 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2M AMMONIUM SULFATE, 0.1M MES PH REMARK 280 6.0, ADDITIVE: 0.001 M ACETYL CO-ENZYME A, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.89650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.12450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.88450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.89650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.12450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.88450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.89650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.12450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.88450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.89650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.12450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.88450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.79300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 153 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 148 REMARK 465 ARG A 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 GLN A 117 OE1 NE2 REMARK 470 LYS A 134 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 151 O HOH A 257 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 18.31 55.20 REMARK 500 SER A 131 76.07 -103.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379362 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GYA A 1 149 UNP B1YEL6 B1YEL6_EXIS2 1 149 SEQADV 3GYA GLY A 0 UNP B1YEL6 EXPRESSION TAG SEQRES 1 A 150 GLY MSE ASP VAL THR ILE GLU ARG VAL ASN ASP PHE ASP SEQRES 2 A 150 GLY TYR ASN TRP LEU PRO LEU LEU ALA LYS SER SER GLN SEQRES 3 A 150 GLU GLY PHE GLN LEU VAL GLU ARG MSE LEU ARG ASN ARG SEQRES 4 A 150 ARG GLU GLU SER PHE GLN GLU ASP GLY GLU ALA MSE PHE SEQRES 5 A 150 VAL ALA LEU SER THR THR ASN GLN VAL LEU ALA CYS GLY SEQRES 6 A 150 GLY TYR MSE LYS GLN SER GLY GLN ALA ARG THR GLY ARG SEQRES 7 A 150 ILE ARG HIS VAL TYR VAL LEU PRO GLU ALA ARG SER HIS SEQRES 8 A 150 GLY ILE GLY THR ALA LEU LEU GLU LYS ILE MSE SER GLU SEQRES 9 A 150 ALA PHE LEU THR TYR ASP ARG LEU VAL LEU TYR SER GLU SEQRES 10 A 150 GLN ALA ASP PRO PHE TYR GLN GLY LEU GLY PHE GLN LEU SEQRES 11 A 150 VAL SER GLY GLU LYS ILE THR HIS THR LEU ASP LYS THR SEQRES 12 A 150 ALA PHE ALA ASP SER ASN ARG MODRES 3GYA MSE A 1 MET SELENOMETHIONINE MODRES 3GYA MSE A 34 MET SELENOMETHIONINE MODRES 3GYA MSE A 50 MET SELENOMETHIONINE MODRES 3GYA MSE A 67 MET SELENOMETHIONINE MODRES 3GYA MSE A 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 13 HET MSE A 50 8 HET MSE A 67 8 HET MSE A 101 8 HET COA A 150 48 HET SO4 A 151 5 HET SO4 A 152 5 HET SO4 A 153 5 HET EDO A 154 4 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *149(H2 O) HELIX 1 1 ASP A 10 TYR A 14 5 5 HELIX 2 2 TRP A 16 GLU A 26 1 11 HELIX 3 3 GLN A 29 ASN A 37 1 9 HELIX 4 4 PRO A 85 ARG A 88 5 4 HELIX 5 5 GLY A 91 PHE A 105 1 15 HELIX 6 6 ALA A 118 LEU A 125 1 8 HELIX 7 7 LYS A 141 SER A 147 1 7 SHEET 1 A 7 THR A 4 ARG A 7 0 SHEET 2 A 7 ALA A 49 LEU A 54 -1 O LEU A 54 N THR A 4 SHEET 3 A 7 VAL A 60 LYS A 68 -1 O LEU A 61 N ALA A 53 SHEET 4 A 7 THR A 75 VAL A 83 -1 O ARG A 77 N MSE A 67 SHEET 5 A 7 ARG A 110 LEU A 113 1 O ARG A 110 N GLY A 76 SHEET 6 A 7 HIS A 137 ASP A 140 -1 O LEU A 139 N LEU A 111 SHEET 7 A 7 GLN A 128 LEU A 129 -1 N GLN A 128 O THR A 138 LINK C MSE A 1 N ASP A 2 1555 1555 1.34 LINK C ARG A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N LEU A 35 1555 1555 1.33 LINK C ALA A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N PHE A 51 1555 1555 1.34 LINK C TYR A 66 N MSE A 67 1555 1555 1.32 LINK C MSE A 67 N LYS A 68 1555 1555 1.33 LINK C ILE A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N SER A 102 1555 1555 1.32 LINK S1P COA A 150 S1P COA A 150 1555 3655 2.06 SITE 1 AC1 16 GLN A 25 PHE A 28 VAL A 83 ARG A 88 SITE 2 AC1 16 SER A 89 HIS A 90 GLY A 91 ILE A 92 SITE 3 AC1 16 GLY A 93 THR A 94 GLN A 117 PHE A 121 SITE 4 AC1 16 HOH A 155 HOH A 198 HOH A 243 HOH A 251 SITE 1 AC2 7 ARG A 33 ARG A 79 HIS A 80 EDO A 154 SITE 2 AC2 7 HOH A 175 HOH A 257 HOH A 282 SITE 1 AC3 4 PHE A 28 GLN A 29 LEU A 30 ARG A 33 SITE 1 AC4 5 ASN A 15 ASN A 58 GLN A 59 HOH A 157 SITE 2 AC4 5 HOH A 184 SITE 1 AC5 8 LEU A 30 ILE A 78 ARG A 79 HIS A 80 SITE 2 AC5 8 VAL A 81 TYR A 114 TYR A 122 SO4 A 151 CRYST1 55.793 66.249 87.769 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011394 0.00000 HETATM 1 N MSE A 1 13.874 2.930 4.089 1.00 50.38 N HETATM 2 CA MSE A 1 14.827 2.445 5.138 1.00 47.44 C HETATM 3 C MSE A 1 14.269 2.698 6.547 1.00 46.38 C HETATM 4 O MSE A 1 14.077 3.858 6.938 1.00 48.91 O HETATM 5 CB MSE A 1 16.160 3.163 4.976 1.00 48.10 C HETATM 6 CG MSE A 1 17.264 2.624 5.829 1.00 47.08 C HETATM 7 SE MSE A 1 18.951 3.418 5.292 0.75 45.35 SE HETATM 8 CE MSE A 1 19.272 2.479 3.564 1.00 45.60 C