data_3GYD # _entry.id 3GYD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GYD pdb_00003gyd 10.2210/pdb3gyd/pdb RCSB RCSB052460 ? ? WWPDB D_1000052460 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 6 'Structure model' 1 5 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Refinement description' 11 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature 11 6 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 18 6 'Structure model' '_pdbx_entry_details.has_protein_modification' 19 6 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 20 6 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 21 6 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 22 6 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 23 6 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 24 6 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 25 6 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 26 6 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GYD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390943 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of cyclic nucleotide-binding domain (YP_546034.1) from Methylobacillus flagellatus KT at 1.79 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cyclic nucleotide-binding domain' 21321.631 2 ? ? ? ? 2 non-polymer syn "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 329.206 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 256 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CNMP-BD protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)YPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSY(MSE)QCYAAP RDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGE(MSE)S(MSE)IDG(MSE)PRSASCVASLPTD FAVLSRDALYQLLAN(MSE)PKLGNKVLIRLLQLLTARFRESYDRILPKTLGELI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPG DYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL IRLLQLLTARFRESYDRILPKTLGELI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 390943 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" CMP 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 TYR n 1 22 PRO n 1 23 ASP n 1 24 LEU n 1 25 VAL n 1 26 HIS n 1 27 LEU n 1 28 GLY n 1 29 GLY n 1 30 ALA n 1 31 ASP n 1 32 LYS n 1 33 TYR n 1 34 PHE n 1 35 GLU n 1 36 GLU n 1 37 ILE n 1 38 LEU n 1 39 GLU n 1 40 ILE n 1 41 VAL n 1 42 ASN n 1 43 LYS n 1 44 ILE n 1 45 LYS n 1 46 LEU n 1 47 PHE n 1 48 GLY n 1 49 ASP n 1 50 PHE n 1 51 SER n 1 52 ASN n 1 53 GLU n 1 54 GLU n 1 55 VAL n 1 56 ARG n 1 57 TYR n 1 58 LEU n 1 59 CYS n 1 60 SER n 1 61 TYR n 1 62 MSE n 1 63 GLN n 1 64 CYS n 1 65 TYR n 1 66 ALA n 1 67 ALA n 1 68 PRO n 1 69 ARG n 1 70 ASP n 1 71 CYS n 1 72 GLN n 1 73 LEU n 1 74 LEU n 1 75 THR n 1 76 GLU n 1 77 GLY n 1 78 ASP n 1 79 PRO n 1 80 GLY n 1 81 ASP n 1 82 TYR n 1 83 LEU n 1 84 LEU n 1 85 LEU n 1 86 ILE n 1 87 LEU n 1 88 THR n 1 89 GLY n 1 90 GLU n 1 91 VAL n 1 92 ASN n 1 93 VAL n 1 94 ILE n 1 95 LYS n 1 96 ASP n 1 97 ILE n 1 98 PRO n 1 99 ASN n 1 100 LYS n 1 101 GLY n 1 102 ILE n 1 103 GLN n 1 104 THR n 1 105 ILE n 1 106 ALA n 1 107 LYS n 1 108 VAL n 1 109 GLY n 1 110 ALA n 1 111 GLY n 1 112 ALA n 1 113 ILE n 1 114 ILE n 1 115 GLY n 1 116 GLU n 1 117 MSE n 1 118 SER n 1 119 MSE n 1 120 ILE n 1 121 ASP n 1 122 GLY n 1 123 MSE n 1 124 PRO n 1 125 ARG n 1 126 SER n 1 127 ALA n 1 128 SER n 1 129 CYS n 1 130 VAL n 1 131 ALA n 1 132 SER n 1 133 LEU n 1 134 PRO n 1 135 THR n 1 136 ASP n 1 137 PHE n 1 138 ALA n 1 139 VAL n 1 140 LEU n 1 141 SER n 1 142 ARG n 1 143 ASP n 1 144 ALA n 1 145 LEU n 1 146 TYR n 1 147 GLN n 1 148 LEU n 1 149 LEU n 1 150 ALA n 1 151 ASN n 1 152 MSE n 1 153 PRO n 1 154 LYS n 1 155 LEU n 1 156 GLY n 1 157 ASN n 1 158 LYS n 1 159 VAL n 1 160 LEU n 1 161 ILE n 1 162 ARG n 1 163 LEU n 1 164 LEU n 1 165 GLN n 1 166 LEU n 1 167 LEU n 1 168 THR n 1 169 ALA n 1 170 ARG n 1 171 PHE n 1 172 ARG n 1 173 GLU n 1 174 SER n 1 175 TYR n 1 176 ASP n 1 177 ARG n 1 178 ILE n 1 179 LEU n 1 180 PRO n 1 181 LYS n 1 182 THR n 1 183 LEU n 1 184 GLY n 1 185 GLU n 1 186 LEU n 1 187 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Mfla_1926, YP_546034.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'KT / DSM 6875' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methylobacillus flagellatus KT' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 265072 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 51484 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CMP non-polymer . "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 'CYCLIC AMP; CAMP' 'C10 H12 N5 O6 P' 329.206 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 -9 HIS HIS A . n A 1 11 HIS 11 -8 -8 HIS HIS A . n A 1 12 HIS 12 -7 -7 HIS HIS A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 TYR 21 2 2 TYR TYR A . n A 1 22 PRO 22 3 3 PRO PRO A . n A 1 23 ASP 23 4 4 ASP ASP A . n A 1 24 LEU 24 5 5 LEU LEU A . n A 1 25 VAL 25 6 6 VAL VAL A . n A 1 26 HIS 26 7 7 HIS HIS A . n A 1 27 LEU 27 8 8 LEU LEU A . n A 1 28 GLY 28 9 9 GLY GLY A . n A 1 29 GLY 29 10 10 GLY GLY A . n A 1 30 ALA 30 11 11 ALA ALA A . n A 1 31 ASP 31 12 12 ASP ASP A . n A 1 32 LYS 32 13 13 LYS LYS A . n A 1 33 TYR 33 14 14 TYR TYR A . n A 1 34 PHE 34 15 15 PHE PHE A . n A 1 35 GLU 35 16 16 GLU GLU A . n A 1 36 GLU 36 17 17 GLU GLU A . n A 1 37 ILE 37 18 18 ILE ILE A . n A 1 38 LEU 38 19 19 LEU LEU A . n A 1 39 GLU 39 20 20 GLU GLU A . n A 1 40 ILE 40 21 21 ILE ILE A . n A 1 41 VAL 41 22 22 VAL VAL A . n A 1 42 ASN 42 23 23 ASN ASN A . n A 1 43 LYS 43 24 24 LYS LYS A . n A 1 44 ILE 44 25 25 ILE ILE A . n A 1 45 LYS 45 26 26 LYS LYS A . n A 1 46 LEU 46 27 27 LEU LEU A . n A 1 47 PHE 47 28 28 PHE PHE A . n A 1 48 GLY 48 29 29 GLY GLY A . n A 1 49 ASP 49 30 30 ASP ASP A . n A 1 50 PHE 50 31 31 PHE PHE A . n A 1 51 SER 51 32 32 SER SER A . n A 1 52 ASN 52 33 33 ASN ASN A . n A 1 53 GLU 53 34 34 GLU GLU A . n A 1 54 GLU 54 35 35 GLU GLU A . n A 1 55 VAL 55 36 36 VAL VAL A . n A 1 56 ARG 56 37 37 ARG ARG A . n A 1 57 TYR 57 38 38 TYR TYR A . n A 1 58 LEU 58 39 39 LEU LEU A . n A 1 59 CYS 59 40 40 CYS CYS A . n A 1 60 SER 60 41 41 SER SER A . n A 1 61 TYR 61 42 42 TYR TYR A . n A 1 62 MSE 62 43 43 MSE MSE A . n A 1 63 GLN 63 44 44 GLN GLN A . n A 1 64 CYS 64 45 45 CYS CYS A . n A 1 65 TYR 65 46 46 TYR TYR A . n A 1 66 ALA 66 47 47 ALA ALA A . n A 1 67 ALA 67 48 48 ALA ALA A . n A 1 68 PRO 68 49 49 PRO PRO A . n A 1 69 ARG 69 50 50 ARG ARG A . n A 1 70 ASP 70 51 51 ASP ASP A . n A 1 71 CYS 71 52 52 CYS CYS A . n A 1 72 GLN 72 53 53 GLN GLN A . n A 1 73 LEU 73 54 54 LEU LEU A . n A 1 74 LEU 74 55 55 LEU LEU A . n A 1 75 THR 75 56 56 THR THR A . n A 1 76 GLU 76 57 57 GLU GLU A . n A 1 77 GLY 77 58 58 GLY GLY A . n A 1 78 ASP 78 59 59 ASP ASP A . n A 1 79 PRO 79 60 60 PRO PRO A . n A 1 80 GLY 80 61 61 GLY GLY A . n A 1 81 ASP 81 62 62 ASP ASP A . n A 1 82 TYR 82 63 63 TYR TYR A . n A 1 83 LEU 83 64 64 LEU LEU A . n A 1 84 LEU 84 65 65 LEU LEU A . n A 1 85 LEU 85 66 66 LEU LEU A . n A 1 86 ILE 86 67 67 ILE ILE A . n A 1 87 LEU 87 68 68 LEU LEU A . n A 1 88 THR 88 69 69 THR THR A . n A 1 89 GLY 89 70 70 GLY GLY A . n A 1 90 GLU 90 71 71 GLU GLU A . n A 1 91 VAL 91 72 72 VAL VAL A . n A 1 92 ASN 92 73 73 ASN ASN A . n A 1 93 VAL 93 74 74 VAL VAL A . n A 1 94 ILE 94 75 75 ILE ILE A . n A 1 95 LYS 95 76 76 LYS LYS A . n A 1 96 ASP 96 77 77 ASP ASP A . n A 1 97 ILE 97 78 78 ILE ILE A . n A 1 98 PRO 98 79 79 PRO PRO A . n A 1 99 ASN 99 80 80 ASN ASN A . n A 1 100 LYS 100 81 81 LYS LYS A . n A 1 101 GLY 101 82 82 GLY GLY A . n A 1 102 ILE 102 83 83 ILE ILE A . n A 1 103 GLN 103 84 84 GLN GLN A . n A 1 104 THR 104 85 85 THR THR A . n A 1 105 ILE 105 86 86 ILE ILE A . n A 1 106 ALA 106 87 87 ALA ALA A . n A 1 107 LYS 107 88 88 LYS LYS A . n A 1 108 VAL 108 89 89 VAL VAL A . n A 1 109 GLY 109 90 90 GLY GLY A . n A 1 110 ALA 110 91 91 ALA ALA A . n A 1 111 GLY 111 92 92 GLY GLY A . n A 1 112 ALA 112 93 93 ALA ALA A . n A 1 113 ILE 113 94 94 ILE ILE A . n A 1 114 ILE 114 95 95 ILE ILE A . n A 1 115 GLY 115 96 96 GLY GLY A . n A 1 116 GLU 116 97 97 GLU GLU A . n A 1 117 MSE 117 98 98 MSE MSE A . n A 1 118 SER 118 99 99 SER SER A . n A 1 119 MSE 119 100 100 MSE MSE A . n A 1 120 ILE 120 101 101 ILE ILE A . n A 1 121 ASP 121 102 102 ASP ASP A . n A 1 122 GLY 122 103 103 GLY GLY A . n A 1 123 MSE 123 104 104 MSE MSE A . n A 1 124 PRO 124 105 105 PRO PRO A . n A 1 125 ARG 125 106 106 ARG ARG A . n A 1 126 SER 126 107 107 SER SER A . n A 1 127 ALA 127 108 108 ALA ALA A . n A 1 128 SER 128 109 109 SER SER A . n A 1 129 CYS 129 110 110 CYS CYS A . n A 1 130 VAL 130 111 111 VAL VAL A . n A 1 131 ALA 131 112 112 ALA ALA A . n A 1 132 SER 132 113 113 SER SER A . n A 1 133 LEU 133 114 114 LEU LEU A . n A 1 134 PRO 134 115 115 PRO PRO A . n A 1 135 THR 135 116 116 THR THR A . n A 1 136 ASP 136 117 117 ASP ASP A . n A 1 137 PHE 137 118 118 PHE PHE A . n A 1 138 ALA 138 119 119 ALA ALA A . n A 1 139 VAL 139 120 120 VAL VAL A . n A 1 140 LEU 140 121 121 LEU LEU A . n A 1 141 SER 141 122 122 SER SER A . n A 1 142 ARG 142 123 123 ARG ARG A . n A 1 143 ASP 143 124 124 ASP ASP A . n A 1 144 ALA 144 125 125 ALA ALA A . n A 1 145 LEU 145 126 126 LEU LEU A . n A 1 146 TYR 146 127 127 TYR TYR A . n A 1 147 GLN 147 128 128 GLN GLN A . n A 1 148 LEU 148 129 129 LEU LEU A . n A 1 149 LEU 149 130 130 LEU LEU A . n A 1 150 ALA 150 131 131 ALA ALA A . n A 1 151 ASN 151 132 132 ASN ASN A . n A 1 152 MSE 152 133 133 MSE MSE A . n A 1 153 PRO 153 134 134 PRO PRO A . n A 1 154 LYS 154 135 135 LYS LYS A . n A 1 155 LEU 155 136 136 LEU LEU A . n A 1 156 GLY 156 137 137 GLY GLY A . n A 1 157 ASN 157 138 138 ASN ASN A . n A 1 158 LYS 158 139 139 LYS LYS A . n A 1 159 VAL 159 140 140 VAL VAL A . n A 1 160 LEU 160 141 141 LEU LEU A . n A 1 161 ILE 161 142 142 ILE ILE A . n A 1 162 ARG 162 143 143 ARG ARG A . n A 1 163 LEU 163 144 144 LEU LEU A . n A 1 164 LEU 164 145 145 LEU LEU A . n A 1 165 GLN 165 146 146 GLN GLN A . n A 1 166 LEU 166 147 147 LEU LEU A . n A 1 167 LEU 167 148 148 LEU LEU A . n A 1 168 THR 168 149 149 THR THR A . n A 1 169 ALA 169 150 150 ALA ALA A . n A 1 170 ARG 170 151 151 ARG ARG A . n A 1 171 PHE 171 152 152 PHE PHE A . n A 1 172 ARG 172 153 153 ARG ARG A . n A 1 173 GLU 173 154 154 GLU GLU A . n A 1 174 SER 174 155 155 SER SER A . n A 1 175 TYR 175 156 156 TYR TYR A . n A 1 176 ASP 176 157 157 ASP ASP A . n A 1 177 ARG 177 158 158 ARG ARG A . n A 1 178 ILE 178 159 159 ILE ILE A . n A 1 179 LEU 179 160 160 LEU LEU A . n A 1 180 PRO 180 161 161 PRO PRO A . n A 1 181 LYS 181 162 162 LYS LYS A . n A 1 182 THR 182 163 163 THR THR A . n A 1 183 LEU 183 164 164 LEU LEU A . n A 1 184 GLY 184 165 165 GLY GLY A . n A 1 185 GLU 185 166 166 GLU GLU A . n A 1 186 LEU 186 167 167 LEU LEU A . n A 1 187 ILE 187 168 168 ILE ILE A . n B 1 1 MSE 1 -18 ? ? ? B . n B 1 2 GLY 2 -17 ? ? ? B . n B 1 3 SER 3 -16 ? ? ? B . n B 1 4 ASP 4 -15 ? ? ? B . n B 1 5 LYS 5 -14 ? ? ? B . n B 1 6 ILE 6 -13 ? ? ? B . n B 1 7 HIS 7 -12 ? ? ? B . n B 1 8 HIS 8 -11 -11 HIS HIS B . n B 1 9 HIS 9 -10 -10 HIS HIS B . n B 1 10 HIS 10 -9 -9 HIS HIS B . n B 1 11 HIS 11 -8 -8 HIS HIS B . n B 1 12 HIS 12 -7 -7 HIS HIS B . n B 1 13 GLU 13 -6 -6 GLU GLU B . n B 1 14 ASN 14 -5 -5 ASN ASN B . n B 1 15 LEU 15 -4 -4 LEU LEU B . n B 1 16 TYR 16 -3 -3 TYR TYR B . n B 1 17 PHE 17 -2 -2 PHE PHE B . n B 1 18 GLN 18 -1 -1 GLN GLN B . n B 1 19 GLY 19 0 0 GLY GLY B . n B 1 20 MSE 20 1 1 MSE MSE B . n B 1 21 TYR 21 2 2 TYR TYR B . n B 1 22 PRO 22 3 3 PRO PRO B . n B 1 23 ASP 23 4 4 ASP ASP B . n B 1 24 LEU 24 5 5 LEU LEU B . n B 1 25 VAL 25 6 6 VAL VAL B . n B 1 26 HIS 26 7 7 HIS HIS B . n B 1 27 LEU 27 8 8 LEU LEU B . n B 1 28 GLY 28 9 9 GLY GLY B . n B 1 29 GLY 29 10 10 GLY GLY B . n B 1 30 ALA 30 11 11 ALA ALA B . n B 1 31 ASP 31 12 12 ASP ASP B . n B 1 32 LYS 32 13 13 LYS LYS B . n B 1 33 TYR 33 14 14 TYR TYR B . n B 1 34 PHE 34 15 15 PHE PHE B . n B 1 35 GLU 35 16 16 GLU GLU B . n B 1 36 GLU 36 17 17 GLU GLU B . n B 1 37 ILE 37 18 18 ILE ILE B . n B 1 38 LEU 38 19 19 LEU LEU B . n B 1 39 GLU 39 20 20 GLU GLU B . n B 1 40 ILE 40 21 21 ILE ILE B . n B 1 41 VAL 41 22 22 VAL VAL B . n B 1 42 ASN 42 23 23 ASN ASN B . n B 1 43 LYS 43 24 24 LYS LYS B . n B 1 44 ILE 44 25 25 ILE ILE B . n B 1 45 LYS 45 26 26 LYS LYS B . n B 1 46 LEU 46 27 27 LEU LEU B . n B 1 47 PHE 47 28 28 PHE PHE B . n B 1 48 GLY 48 29 29 GLY GLY B . n B 1 49 ASP 49 30 30 ASP ASP B . n B 1 50 PHE 50 31 31 PHE PHE B . n B 1 51 SER 51 32 32 SER SER B . n B 1 52 ASN 52 33 33 ASN ASN B . n B 1 53 GLU 53 34 34 GLU GLU B . n B 1 54 GLU 54 35 35 GLU GLU B . n B 1 55 VAL 55 36 36 VAL VAL B . n B 1 56 ARG 56 37 37 ARG ARG B . n B 1 57 TYR 57 38 38 TYR TYR B . n B 1 58 LEU 58 39 39 LEU LEU B . n B 1 59 CYS 59 40 40 CYS CYS B . n B 1 60 SER 60 41 41 SER SER B . n B 1 61 TYR 61 42 42 TYR TYR B . n B 1 62 MSE 62 43 43 MSE MSE B . n B 1 63 GLN 63 44 44 GLN GLN B . n B 1 64 CYS 64 45 45 CYS CYS B . n B 1 65 TYR 65 46 46 TYR TYR B . n B 1 66 ALA 66 47 47 ALA ALA B . n B 1 67 ALA 67 48 48 ALA ALA B . n B 1 68 PRO 68 49 49 PRO PRO B . n B 1 69 ARG 69 50 50 ARG ARG B . n B 1 70 ASP 70 51 51 ASP ASP B . n B 1 71 CYS 71 52 52 CYS CYS B . n B 1 72 GLN 72 53 53 GLN GLN B . n B 1 73 LEU 73 54 54 LEU LEU B . n B 1 74 LEU 74 55 55 LEU LEU B . n B 1 75 THR 75 56 56 THR THR B . n B 1 76 GLU 76 57 57 GLU GLU B . n B 1 77 GLY 77 58 58 GLY GLY B . n B 1 78 ASP 78 59 59 ASP ASP B . n B 1 79 PRO 79 60 60 PRO PRO B . n B 1 80 GLY 80 61 61 GLY GLY B . n B 1 81 ASP 81 62 62 ASP ASP B . n B 1 82 TYR 82 63 63 TYR TYR B . n B 1 83 LEU 83 64 64 LEU LEU B . n B 1 84 LEU 84 65 65 LEU LEU B . n B 1 85 LEU 85 66 66 LEU LEU B . n B 1 86 ILE 86 67 67 ILE ILE B . n B 1 87 LEU 87 68 68 LEU LEU B . n B 1 88 THR 88 69 69 THR THR B . n B 1 89 GLY 89 70 70 GLY GLY B . n B 1 90 GLU 90 71 71 GLU GLU B . n B 1 91 VAL 91 72 72 VAL VAL B . n B 1 92 ASN 92 73 73 ASN ASN B . n B 1 93 VAL 93 74 74 VAL VAL B . n B 1 94 ILE 94 75 75 ILE ILE B . n B 1 95 LYS 95 76 76 LYS LYS B . n B 1 96 ASP 96 77 77 ASP ASP B . n B 1 97 ILE 97 78 78 ILE ILE B . n B 1 98 PRO 98 79 79 PRO PRO B . n B 1 99 ASN 99 80 80 ASN ASN B . n B 1 100 LYS 100 81 81 LYS LYS B . n B 1 101 GLY 101 82 82 GLY GLY B . n B 1 102 ILE 102 83 83 ILE ILE B . n B 1 103 GLN 103 84 84 GLN GLN B . n B 1 104 THR 104 85 85 THR THR B . n B 1 105 ILE 105 86 86 ILE ILE B . n B 1 106 ALA 106 87 87 ALA ALA B . n B 1 107 LYS 107 88 88 LYS LYS B . n B 1 108 VAL 108 89 89 VAL VAL B . n B 1 109 GLY 109 90 90 GLY GLY B . n B 1 110 ALA 110 91 91 ALA ALA B . n B 1 111 GLY 111 92 92 GLY GLY B . n B 1 112 ALA 112 93 93 ALA ALA B . n B 1 113 ILE 113 94 94 ILE ILE B . n B 1 114 ILE 114 95 95 ILE ILE B . n B 1 115 GLY 115 96 96 GLY GLY B . n B 1 116 GLU 116 97 97 GLU GLU B . n B 1 117 MSE 117 98 98 MSE MSE B . n B 1 118 SER 118 99 99 SER SER B . n B 1 119 MSE 119 100 100 MSE MSE B . n B 1 120 ILE 120 101 101 ILE ILE B . n B 1 121 ASP 121 102 102 ASP ASP B . n B 1 122 GLY 122 103 103 GLY GLY B . n B 1 123 MSE 123 104 104 MSE MSE B . n B 1 124 PRO 124 105 105 PRO PRO B . n B 1 125 ARG 125 106 106 ARG ARG B . n B 1 126 SER 126 107 107 SER SER B . n B 1 127 ALA 127 108 108 ALA ALA B . n B 1 128 SER 128 109 109 SER SER B . n B 1 129 CYS 129 110 110 CYS CYS B . n B 1 130 VAL 130 111 111 VAL VAL B . n B 1 131 ALA 131 112 112 ALA ALA B . n B 1 132 SER 132 113 113 SER SER B . n B 1 133 LEU 133 114 114 LEU LEU B . n B 1 134 PRO 134 115 115 PRO PRO B . n B 1 135 THR 135 116 116 THR THR B . n B 1 136 ASP 136 117 117 ASP ASP B . n B 1 137 PHE 137 118 118 PHE PHE B . n B 1 138 ALA 138 119 119 ALA ALA B . n B 1 139 VAL 139 120 120 VAL VAL B . n B 1 140 LEU 140 121 121 LEU LEU B . n B 1 141 SER 141 122 122 SER SER B . n B 1 142 ARG 142 123 123 ARG ARG B . n B 1 143 ASP 143 124 124 ASP ASP B . n B 1 144 ALA 144 125 125 ALA ALA B . n B 1 145 LEU 145 126 126 LEU LEU B . n B 1 146 TYR 146 127 127 TYR TYR B . n B 1 147 GLN 147 128 128 GLN GLN B . n B 1 148 LEU 148 129 129 LEU LEU B . n B 1 149 LEU 149 130 130 LEU LEU B . n B 1 150 ALA 150 131 131 ALA ALA B . n B 1 151 ASN 151 132 132 ASN ASN B . n B 1 152 MSE 152 133 133 MSE MSE B . n B 1 153 PRO 153 134 134 PRO PRO B . n B 1 154 LYS 154 135 135 LYS LYS B . n B 1 155 LEU 155 136 136 LEU LEU B . n B 1 156 GLY 156 137 137 GLY GLY B . n B 1 157 ASN 157 138 138 ASN ASN B . n B 1 158 LYS 158 139 139 LYS LYS B . n B 1 159 VAL 159 140 140 VAL VAL B . n B 1 160 LEU 160 141 141 LEU LEU B . n B 1 161 ILE 161 142 142 ILE ILE B . n B 1 162 ARG 162 143 143 ARG ARG B . n B 1 163 LEU 163 144 144 LEU LEU B . n B 1 164 LEU 164 145 145 LEU LEU B . n B 1 165 GLN 165 146 146 GLN GLN B . n B 1 166 LEU 166 147 147 LEU LEU B . n B 1 167 LEU 167 148 148 LEU LEU B . n B 1 168 THR 168 149 149 THR THR B . n B 1 169 ALA 169 150 150 ALA ALA B . n B 1 170 ARG 170 151 151 ARG ARG B . n B 1 171 PHE 171 152 152 PHE PHE B . n B 1 172 ARG 172 153 153 ARG ARG B . n B 1 173 GLU 173 154 154 GLU GLU B . n B 1 174 SER 174 155 155 SER SER B . n B 1 175 TYR 175 156 156 TYR TYR B . n B 1 176 ASP 176 157 157 ASP ASP B . n B 1 177 ARG 177 158 158 ARG ARG B . n B 1 178 ILE 178 159 159 ILE ILE B . n B 1 179 LEU 179 160 160 LEU LEU B . n B 1 180 PRO 180 161 161 PRO PRO B . n B 1 181 LYS 181 162 162 LYS LYS B . n B 1 182 THR 182 163 163 THR THR B . n B 1 183 LEU 183 164 164 LEU LEU B . n B 1 184 GLY 184 165 165 GLY GLY B . n B 1 185 GLU 185 166 166 GLU GLU B . n B 1 186 LEU 186 167 167 LEU LEU B . n B 1 187 ILE 187 168 168 ILE ILE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP 1 300 300 CMP CMP A . D 2 CMP 1 300 300 CMP CMP B . E 3 GOL 1 169 1 GOL GOL B . F 4 HOH 1 169 169 HOH HOH A . F 4 HOH 2 170 2 HOH HOH A . F 4 HOH 3 171 3 HOH HOH A . F 4 HOH 4 172 172 HOH HOH A . F 4 HOH 5 174 174 HOH HOH A . F 4 HOH 6 177 7 HOH HOH A . F 4 HOH 7 178 178 HOH HOH A . F 4 HOH 8 179 8 HOH HOH A . F 4 HOH 9 180 180 HOH HOH A . F 4 HOH 10 181 9 HOH HOH A . F 4 HOH 11 182 182 HOH HOH A . F 4 HOH 12 183 183 HOH HOH A . F 4 HOH 13 184 10 HOH HOH A . F 4 HOH 14 185 11 HOH HOH A . F 4 HOH 15 186 12 HOH HOH A . F 4 HOH 16 187 187 HOH HOH A . F 4 HOH 17 188 188 HOH HOH A . F 4 HOH 18 189 189 HOH HOH A . F 4 HOH 19 190 190 HOH HOH A . F 4 HOH 20 191 191 HOH HOH A . F 4 HOH 21 192 192 HOH HOH A . F 4 HOH 22 193 13 HOH HOH A . F 4 HOH 23 194 14 HOH HOH A . F 4 HOH 24 195 15 HOH HOH A . F 4 HOH 25 196 16 HOH HOH A . F 4 HOH 26 197 17 HOH HOH A . F 4 HOH 27 198 18 HOH HOH A . F 4 HOH 28 199 199 HOH HOH A . F 4 HOH 29 200 200 HOH HOH A . F 4 HOH 30 201 201 HOH HOH A . F 4 HOH 31 202 202 HOH HOH A . F 4 HOH 32 203 203 HOH HOH A . F 4 HOH 33 204 204 HOH HOH A . F 4 HOH 34 205 19 HOH HOH A . F 4 HOH 35 206 20 HOH HOH A . F 4 HOH 36 207 207 HOH HOH A . F 4 HOH 37 209 22 HOH HOH A . F 4 HOH 38 213 213 HOH HOH A . F 4 HOH 39 214 214 HOH HOH A . F 4 HOH 40 215 215 HOH HOH A . F 4 HOH 41 216 216 HOH HOH A . F 4 HOH 42 217 217 HOH HOH A . F 4 HOH 43 218 218 HOH HOH A . F 4 HOH 44 222 222 HOH HOH A . F 4 HOH 45 224 224 HOH HOH A . F 4 HOH 46 225 225 HOH HOH A . F 4 HOH 47 226 226 HOH HOH A . F 4 HOH 48 227 227 HOH HOH A . F 4 HOH 49 228 228 HOH HOH A . F 4 HOH 50 229 229 HOH HOH A . F 4 HOH 51 231 231 HOH HOH A . F 4 HOH 52 232 31 HOH HOH A . F 4 HOH 53 233 32 HOH HOH A . F 4 HOH 54 236 35 HOH HOH A . F 4 HOH 55 237 237 HOH HOH A . F 4 HOH 56 238 36 HOH HOH A . F 4 HOH 57 239 37 HOH HOH A . F 4 HOH 58 241 39 HOH HOH A . F 4 HOH 59 242 242 HOH HOH A . F 4 HOH 60 243 40 HOH HOH A . F 4 HOH 61 244 244 HOH HOH A . F 4 HOH 62 245 245 HOH HOH A . F 4 HOH 63 246 246 HOH HOH A . F 4 HOH 64 247 247 HOH HOH A . F 4 HOH 65 248 248 HOH HOH A . F 4 HOH 66 249 249 HOH HOH A . F 4 HOH 67 250 250 HOH HOH A . F 4 HOH 68 251 41 HOH HOH A . F 4 HOH 69 252 252 HOH HOH A . F 4 HOH 70 253 253 HOH HOH A . F 4 HOH 71 256 256 HOH HOH A . F 4 HOH 72 257 257 HOH HOH A . F 4 HOH 73 260 46 HOH HOH A . F 4 HOH 74 262 48 HOH HOH A . F 4 HOH 75 263 49 HOH HOH A . F 4 HOH 76 265 51 HOH HOH A . F 4 HOH 77 267 53 HOH HOH A . F 4 HOH 78 272 58 HOH HOH A . F 4 HOH 79 273 59 HOH HOH A . F 4 HOH 80 274 60 HOH HOH A . F 4 HOH 81 275 61 HOH HOH A . F 4 HOH 82 276 62 HOH HOH A . F 4 HOH 83 277 63 HOH HOH A . F 4 HOH 84 281 67 HOH HOH A . F 4 HOH 85 285 71 HOH HOH A . F 4 HOH 86 286 72 HOH HOH A . F 4 HOH 87 288 74 HOH HOH A . F 4 HOH 88 289 75 HOH HOH A . F 4 HOH 89 290 76 HOH HOH A . F 4 HOH 90 291 77 HOH HOH A . F 4 HOH 91 292 78 HOH HOH A . F 4 HOH 92 294 80 HOH HOH A . F 4 HOH 93 297 83 HOH HOH A . F 4 HOH 94 302 87 HOH HOH A . F 4 HOH 95 304 89 HOH HOH A . F 4 HOH 96 305 90 HOH HOH A . F 4 HOH 97 309 94 HOH HOH A . F 4 HOH 98 312 97 HOH HOH A . F 4 HOH 99 313 98 HOH HOH A . F 4 HOH 100 318 103 HOH HOH A . F 4 HOH 101 320 105 HOH HOH A . F 4 HOH 102 323 108 HOH HOH A . F 4 HOH 103 324 109 HOH HOH A . F 4 HOH 104 325 110 HOH HOH A . F 4 HOH 105 326 111 HOH HOH A . F 4 HOH 106 327 112 HOH HOH A . F 4 HOH 107 330 115 HOH HOH A . F 4 HOH 108 332 117 HOH HOH A . F 4 HOH 109 335 120 HOH HOH A . F 4 HOH 110 337 122 HOH HOH A . F 4 HOH 111 339 124 HOH HOH A . F 4 HOH 112 340 125 HOH HOH A . F 4 HOH 113 342 127 HOH HOH A . F 4 HOH 114 343 128 HOH HOH A . F 4 HOH 115 346 131 HOH HOH A . F 4 HOH 116 348 133 HOH HOH A . F 4 HOH 117 349 134 HOH HOH A . F 4 HOH 118 351 136 HOH HOH A . F 4 HOH 119 354 139 HOH HOH A . F 4 HOH 120 355 140 HOH HOH A . F 4 HOH 121 359 144 HOH HOH A . F 4 HOH 122 362 147 HOH HOH A . F 4 HOH 123 363 148 HOH HOH A . F 4 HOH 124 364 149 HOH HOH A . F 4 HOH 125 365 150 HOH HOH A . F 4 HOH 126 367 152 HOH HOH A . F 4 HOH 127 368 153 HOH HOH A . F 4 HOH 128 371 156 HOH HOH A . F 4 HOH 129 372 157 HOH HOH A . F 4 HOH 130 374 159 HOH HOH A . F 4 HOH 131 375 160 HOH HOH A . F 4 HOH 132 376 161 HOH HOH A . F 4 HOH 133 377 162 HOH HOH A . F 4 HOH 134 378 163 HOH HOH A . F 4 HOH 135 379 164 HOH HOH A . F 4 HOH 136 380 165 HOH HOH A . F 4 HOH 137 381 166 HOH HOH A . F 4 HOH 138 382 167 HOH HOH A . G 4 HOH 1 170 170 HOH HOH B . G 4 HOH 2 171 171 HOH HOH B . G 4 HOH 3 173 4 HOH HOH B . G 4 HOH 4 174 173 HOH HOH B . G 4 HOH 5 175 5 HOH HOH B . G 4 HOH 6 176 6 HOH HOH B . G 4 HOH 7 177 177 HOH HOH B . G 4 HOH 8 178 175 HOH HOH B . G 4 HOH 9 179 179 HOH HOH B . G 4 HOH 10 180 176 HOH HOH B . G 4 HOH 11 181 181 HOH HOH B . G 4 HOH 12 182 208 HOH HOH B . G 4 HOH 13 183 210 HOH HOH B . G 4 HOH 14 184 184 HOH HOH B . G 4 HOH 15 185 185 HOH HOH B . G 4 HOH 16 186 186 HOH HOH B . G 4 HOH 17 187 211 HOH HOH B . G 4 HOH 18 188 212 HOH HOH B . G 4 HOH 19 189 219 HOH HOH B . G 4 HOH 20 190 220 HOH HOH B . G 4 HOH 21 191 221 HOH HOH B . G 4 HOH 22 192 223 HOH HOH B . G 4 HOH 23 193 193 HOH HOH B . G 4 HOH 24 194 194 HOH HOH B . G 4 HOH 25 195 195 HOH HOH B . G 4 HOH 26 196 196 HOH HOH B . G 4 HOH 27 197 197 HOH HOH B . G 4 HOH 28 198 198 HOH HOH B . G 4 HOH 29 199 230 HOH HOH B . G 4 HOH 30 200 234 HOH HOH B . G 4 HOH 31 201 235 HOH HOH B . G 4 HOH 32 202 240 HOH HOH B . G 4 HOH 33 203 254 HOH HOH B . G 4 HOH 34 204 255 HOH HOH B . G 4 HOH 35 205 205 HOH HOH B . G 4 HOH 36 206 206 HOH HOH B . G 4 HOH 37 208 21 HOH HOH B . G 4 HOH 38 209 209 HOH HOH B . G 4 HOH 39 210 23 HOH HOH B . G 4 HOH 40 211 24 HOH HOH B . G 4 HOH 41 212 25 HOH HOH B . G 4 HOH 42 219 26 HOH HOH B . G 4 HOH 43 220 27 HOH HOH B . G 4 HOH 44 221 28 HOH HOH B . G 4 HOH 45 223 29 HOH HOH B . G 4 HOH 46 230 30 HOH HOH B . G 4 HOH 47 232 232 HOH HOH B . G 4 HOH 48 233 233 HOH HOH B . G 4 HOH 49 234 33 HOH HOH B . G 4 HOH 50 235 34 HOH HOH B . G 4 HOH 51 236 236 HOH HOH B . G 4 HOH 52 238 238 HOH HOH B . G 4 HOH 53 239 239 HOH HOH B . G 4 HOH 54 240 38 HOH HOH B . G 4 HOH 55 241 241 HOH HOH B . G 4 HOH 56 243 243 HOH HOH B . G 4 HOH 57 251 251 HOH HOH B . G 4 HOH 58 254 42 HOH HOH B . G 4 HOH 59 255 43 HOH HOH B . G 4 HOH 60 258 44 HOH HOH B . G 4 HOH 61 259 45 HOH HOH B . G 4 HOH 62 261 47 HOH HOH B . G 4 HOH 63 264 50 HOH HOH B . G 4 HOH 64 266 52 HOH HOH B . G 4 HOH 65 268 54 HOH HOH B . G 4 HOH 66 269 55 HOH HOH B . G 4 HOH 67 270 56 HOH HOH B . G 4 HOH 68 271 57 HOH HOH B . G 4 HOH 69 278 64 HOH HOH B . G 4 HOH 70 279 65 HOH HOH B . G 4 HOH 71 280 66 HOH HOH B . G 4 HOH 72 282 68 HOH HOH B . G 4 HOH 73 283 69 HOH HOH B . G 4 HOH 74 284 70 HOH HOH B . G 4 HOH 75 287 73 HOH HOH B . G 4 HOH 76 293 79 HOH HOH B . G 4 HOH 77 295 81 HOH HOH B . G 4 HOH 78 296 82 HOH HOH B . G 4 HOH 79 298 84 HOH HOH B . G 4 HOH 80 299 85 HOH HOH B . G 4 HOH 81 301 86 HOH HOH B . G 4 HOH 82 303 88 HOH HOH B . G 4 HOH 83 306 91 HOH HOH B . G 4 HOH 84 307 92 HOH HOH B . G 4 HOH 85 308 93 HOH HOH B . G 4 HOH 86 310 95 HOH HOH B . G 4 HOH 87 311 96 HOH HOH B . G 4 HOH 88 314 99 HOH HOH B . G 4 HOH 89 315 100 HOH HOH B . G 4 HOH 90 316 101 HOH HOH B . G 4 HOH 91 317 102 HOH HOH B . G 4 HOH 92 319 104 HOH HOH B . G 4 HOH 93 321 106 HOH HOH B . G 4 HOH 94 322 107 HOH HOH B . G 4 HOH 95 328 113 HOH HOH B . G 4 HOH 96 329 114 HOH HOH B . G 4 HOH 97 331 116 HOH HOH B . G 4 HOH 98 333 118 HOH HOH B . G 4 HOH 99 334 119 HOH HOH B . G 4 HOH 100 336 121 HOH HOH B . G 4 HOH 101 338 123 HOH HOH B . G 4 HOH 102 341 126 HOH HOH B . G 4 HOH 103 344 129 HOH HOH B . G 4 HOH 104 345 130 HOH HOH B . G 4 HOH 105 347 132 HOH HOH B . G 4 HOH 106 350 135 HOH HOH B . G 4 HOH 107 352 137 HOH HOH B . G 4 HOH 108 353 138 HOH HOH B . G 4 HOH 109 356 141 HOH HOH B . G 4 HOH 110 357 142 HOH HOH B . G 4 HOH 111 358 143 HOH HOH B . G 4 HOH 112 360 145 HOH HOH B . G 4 HOH 113 361 146 HOH HOH B . G 4 HOH 114 366 151 HOH HOH B . G 4 HOH 115 369 154 HOH HOH B . G 4 HOH 116 370 155 HOH HOH B . G 4 HOH 117 373 158 HOH HOH B . G 4 HOH 118 383 168 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 13 ? CE ? A LYS 32 CE 2 1 Y 1 A LYS 13 ? NZ ? A LYS 32 NZ 3 1 Y 1 A ASN 80 ? CG ? A ASN 99 CG 4 1 Y 1 A ASN 80 ? OD1 ? A ASN 99 OD1 5 1 Y 1 A ASN 80 ? ND2 ? A ASN 99 ND2 6 1 Y 1 A LYS 88 ? CE ? A LYS 107 CE 7 1 Y 1 A LYS 88 ? NZ ? A LYS 107 NZ 8 1 Y 1 A GLU 166 ? CG ? A GLU 185 CG 9 1 Y 1 A GLU 166 ? CD ? A GLU 185 CD 10 1 Y 1 A GLU 166 ? OE1 ? A GLU 185 OE1 11 1 Y 1 A GLU 166 ? OE2 ? A GLU 185 OE2 12 1 Y 1 B LYS 13 ? NZ ? B LYS 32 NZ 13 1 Y 1 B ASN 80 ? CG ? B ASN 99 CG 14 1 Y 1 B ASN 80 ? OD1 ? B ASN 99 OD1 15 1 Y 1 B ASN 80 ? ND2 ? B ASN 99 ND2 16 1 Y 1 B LYS 88 ? CE ? B LYS 107 CE 17 1 Y 1 B LYS 88 ? NZ ? B LYS 107 NZ 18 1 Y 1 B GLN 128 ? CD ? B GLN 147 CD 19 1 Y 1 B GLN 128 ? OE1 ? B GLN 147 OE1 20 1 Y 1 B GLN 128 ? NE2 ? B GLN 147 NE2 21 1 Y 1 B LYS 135 ? NZ ? B LYS 154 NZ # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _cell.entry_id 3GYD _cell.length_a 60.032 _cell.length_b 39.745 _cell.length_c 70.977 _cell.angle_alpha 90.000 _cell.angle_beta 101.850 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GYD _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GYD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 36.0% PEG 3000, 0.1M CHES pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-01-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97956 1.0 3 0.97944 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97956, 0.97944' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GYD _reflns.d_resolution_high 1.79 _reflns.d_resolution_low 29.374 _reflns.number_obs 30961 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 6.144 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.79 1.84 ? 4786 ? 0.559 1.1 0.559 ? 2.30 ? 2066 90.80 1 1 1.84 1.89 ? 6128 ? 0.547 1.2 0.547 ? 2.70 ? 2230 98.00 2 1 1.89 1.94 ? 6675 ? 0.473 1.4 0.473 ? 3.10 ? 2141 100.00 3 1 1.94 2.00 ? 6615 ? 0.366 1.8 0.366 ? 3.10 ? 2120 100.00 4 1 2.00 2.07 ? 6358 ? 0.271 2.5 0.271 ? 3.10 ? 2034 100.00 5 1 2.07 2.14 ? 6230 ? 0.221 3.0 0.221 ? 3.10 ? 2008 100.00 6 1 2.14 2.22 ? 5947 ? 0.194 3.5 0.194 ? 3.10 ? 1896 100.00 7 1 2.22 2.31 ? 5829 ? 0.160 4.1 0.160 ? 3.10 ? 1864 100.00 8 1 2.31 2.41 ? 5475 ? 0.132 5.0 0.132 ? 3.10 ? 1749 100.00 9 1 2.41 2.53 ? 5285 ? 0.126 5.3 0.126 ? 3.10 ? 1694 100.00 10 1 2.53 2.67 ? 5099 ? 0.108 6.3 0.108 ? 3.10 ? 1626 100.00 11 1 2.67 2.83 ? 4787 ? 0.092 7.4 0.092 ? 3.10 ? 1528 100.00 12 1 2.83 3.03 ? 4519 ? 0.083 7.9 0.083 ? 3.10 ? 1444 100.00 13 1 3.03 3.27 ? 4173 ? 0.074 8.6 0.074 ? 3.10 ? 1342 99.80 14 1 3.27 3.58 ? 3815 ? 0.066 9.4 0.066 ? 3.10 ? 1237 99.90 15 1 3.58 4.00 ? 3531 ? 0.054 11.1 0.054 ? 3.10 ? 1135 99.80 16 1 4.00 4.62 ? 3050 ? 0.048 13.0 0.048 ? 3.10 ? 982 99.60 17 1 4.62 5.66 ? 2603 ? 0.048 12.9 0.048 ? 3.10 ? 838 99.40 18 1 5.66 8.01 ? 1997 ? 0.056 10.8 0.056 ? 3.00 ? 659 98.90 19 1 8.01 29.374 ? 1070 ? 0.041 15.2 0.041 ? 2.90 ? 368 96.00 20 1 # _refine.entry_id 3GYD _refine.ls_d_res_high 1.790 _refine.ls_d_res_low 29.374 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.820 _refine.ls_number_reflns_obs 30921 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN ADENOSINE-3'-5'-CYCLIC-MONOPHOSPHATE (CMP) IS MODELED INTO THE LIGAND BINDING SITE ON EACH MONOMER BASED ON THE PRESENCE OF CLEAR AND CONCLUSIVE ELECTRON DENSITY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.170 _refine.ls_R_factor_R_work 0.168 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.212 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1549 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.095 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.370 _refine.aniso_B[2][2] 1.370 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.190 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.overall_SU_ML 0.092 _refine.overall_SU_B 5.717 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 59.54 _refine.B_iso_min 12.77 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2795 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 256 _refine_hist.number_atoms_total 3101 _refine_hist.d_res_high 1.790 _refine_hist.d_res_low 29.374 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 3028 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 2023 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 4128 1.569 2.015 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4964 0.990 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 381 5.856 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 127 27.901 24.252 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 524 13.913 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 16 17.166 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 464 0.104 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 3377 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 593 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 643 0.211 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 2173 0.195 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 1461 0.179 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 1555 0.086 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 232 0.172 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 26 0.182 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 49 0.249 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 17 0.150 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 2027 1.374 2.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 754 0.345 2.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 3008 1.967 3.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 1284 1.415 2.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 1120 2.044 3.000 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1978 0.380 5.000 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 1978 1.640 10.000 2 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 1.790 _refine_ls_shell.d_res_low 1.837 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.050 _refine_ls_shell.number_reflns_R_work 1923 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.240 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2042 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A LEU 24 . A LEU 183 . A LEU 5 A LEU 164 6 ? 1 2 1 B LEU 24 . B LEU 183 . B LEU 5 B LEU 164 6 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3GYD _struct.title 'Crystal structure of a cyclic nucleotide-binding domain (mfla_1926) from methylobacillus flagellatus kt at 1.79 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Nucleotide binding protein, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, dna binding protein ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.entry_id 3GYD # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1GZZ4_METFK _struct_ref.pdbx_db_accession Q1GZZ4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPN KGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRIL PKTLGELI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GYD A 20 ? 187 ? Q1GZZ4 1 ? 168 ? 1 168 2 1 3GYD B 20 ? 187 ? Q1GZZ4 1 ? 168 ? 1 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GYD MSE A 1 ? UNP Q1GZZ4 ? ? 'expression tag' -18 1 1 3GYD GLY A 2 ? UNP Q1GZZ4 ? ? 'expression tag' -17 2 1 3GYD SER A 3 ? UNP Q1GZZ4 ? ? 'expression tag' -16 3 1 3GYD ASP A 4 ? UNP Q1GZZ4 ? ? 'expression tag' -15 4 1 3GYD LYS A 5 ? UNP Q1GZZ4 ? ? 'expression tag' -14 5 1 3GYD ILE A 6 ? UNP Q1GZZ4 ? ? 'expression tag' -13 6 1 3GYD HIS A 7 ? UNP Q1GZZ4 ? ? 'expression tag' -12 7 1 3GYD HIS A 8 ? UNP Q1GZZ4 ? ? 'expression tag' -11 8 1 3GYD HIS A 9 ? UNP Q1GZZ4 ? ? 'expression tag' -10 9 1 3GYD HIS A 10 ? UNP Q1GZZ4 ? ? 'expression tag' -9 10 1 3GYD HIS A 11 ? UNP Q1GZZ4 ? ? 'expression tag' -8 11 1 3GYD HIS A 12 ? UNP Q1GZZ4 ? ? 'expression tag' -7 12 1 3GYD GLU A 13 ? UNP Q1GZZ4 ? ? 'expression tag' -6 13 1 3GYD ASN A 14 ? UNP Q1GZZ4 ? ? 'expression tag' -5 14 1 3GYD LEU A 15 ? UNP Q1GZZ4 ? ? 'expression tag' -4 15 1 3GYD TYR A 16 ? UNP Q1GZZ4 ? ? 'expression tag' -3 16 1 3GYD PHE A 17 ? UNP Q1GZZ4 ? ? 'expression tag' -2 17 1 3GYD GLN A 18 ? UNP Q1GZZ4 ? ? 'expression tag' -1 18 1 3GYD GLY A 19 ? UNP Q1GZZ4 ? ? 'expression tag' 0 19 2 3GYD MSE B 1 ? UNP Q1GZZ4 ? ? 'expression tag' -18 20 2 3GYD GLY B 2 ? UNP Q1GZZ4 ? ? 'expression tag' -17 21 2 3GYD SER B 3 ? UNP Q1GZZ4 ? ? 'expression tag' -16 22 2 3GYD ASP B 4 ? UNP Q1GZZ4 ? ? 'expression tag' -15 23 2 3GYD LYS B 5 ? UNP Q1GZZ4 ? ? 'expression tag' -14 24 2 3GYD ILE B 6 ? UNP Q1GZZ4 ? ? 'expression tag' -13 25 2 3GYD HIS B 7 ? UNP Q1GZZ4 ? ? 'expression tag' -12 26 2 3GYD HIS B 8 ? UNP Q1GZZ4 ? ? 'expression tag' -11 27 2 3GYD HIS B 9 ? UNP Q1GZZ4 ? ? 'expression tag' -10 28 2 3GYD HIS B 10 ? UNP Q1GZZ4 ? ? 'expression tag' -9 29 2 3GYD HIS B 11 ? UNP Q1GZZ4 ? ? 'expression tag' -8 30 2 3GYD HIS B 12 ? UNP Q1GZZ4 ? ? 'expression tag' -7 31 2 3GYD GLU B 13 ? UNP Q1GZZ4 ? ? 'expression tag' -6 32 2 3GYD ASN B 14 ? UNP Q1GZZ4 ? ? 'expression tag' -5 33 2 3GYD LEU B 15 ? UNP Q1GZZ4 ? ? 'expression tag' -4 34 2 3GYD TYR B 16 ? UNP Q1GZZ4 ? ? 'expression tag' -3 35 2 3GYD PHE B 17 ? UNP Q1GZZ4 ? ? 'expression tag' -2 36 2 3GYD GLN B 18 ? UNP Q1GZZ4 ? ? 'expression tag' -1 37 2 3GYD GLY B 19 ? UNP Q1GZZ4 ? ? 'expression tag' 0 38 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5180 ? 1 MORE -39.4 ? 1 'SSA (A^2)' 14810 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 12 ? PHE A 17 ? HIS A -7 PHE A -2 1 ? 6 HELX_P HELX_P2 2 MSE A 20 ? LEU A 24 ? MSE A 1 LEU A 5 5 ? 5 HELX_P HELX_P3 3 TYR A 33 ? ASN A 42 ? TYR A 14 ASN A 23 1 ? 10 HELX_P HELX_P4 4 SER A 51 ? SER A 60 ? SER A 32 SER A 41 1 ? 10 HELX_P HELX_P5 5 GLY A 115 ? GLY A 122 ? GLY A 96 GLY A 103 1 ? 8 HELX_P HELX_P6 6 ARG A 142 ? MSE A 152 ? ARG A 123 MSE A 133 1 ? 11 HELX_P HELX_P7 7 MSE A 152 ? LEU A 179 ? MSE A 133 LEU A 160 1 ? 28 HELX_P HELX_P8 8 PRO A 180 ? THR A 182 ? PRO A 161 THR A 163 5 ? 3 HELX_P HELX_P9 9 HIS B 8 ? TYR B 21 ? HIS B -11 TYR B 2 1 ? 14 HELX_P HELX_P10 10 TYR B 33 ? ASN B 42 ? TYR B 14 ASN B 23 1 ? 10 HELX_P HELX_P11 11 SER B 51 ? TYR B 61 ? SER B 32 TYR B 42 1 ? 11 HELX_P HELX_P12 12 GLY B 115 ? GLY B 122 ? GLY B 96 GLY B 103 1 ? 8 HELX_P HELX_P13 13 ARG B 142 ? MSE B 152 ? ARG B 123 MSE B 133 1 ? 11 HELX_P HELX_P14 14 MSE B 152 ? LEU B 179 ? MSE B 133 LEU B 160 1 ? 28 HELX_P HELX_P15 15 PRO B 180 ? THR B 182 ? PRO B 161 THR B 163 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A TYR 21 N ? ? A MSE 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale3 covale both ? A TYR 61 C ? ? ? 1_555 A MSE 62 N ? ? A TYR 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale4 covale both ? A MSE 62 C ? ? ? 1_555 A GLN 63 N ? ? A MSE 43 A GLN 44 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A GLU 116 C ? ? ? 1_555 A MSE 117 N ? ? A GLU 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 117 C ? ? ? 1_555 A SER 118 N ? ? A MSE 98 A SER 99 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A SER 118 C ? ? ? 1_555 A MSE 119 N ? ? A SER 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale8 covale both ? A MSE 119 C ? ? ? 1_555 A ILE 120 N ? ? A MSE 100 A ILE 101 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A GLY 122 C ? ? ? 1_555 A MSE 123 N A ? A GLY 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? A GLY 122 C ? ? ? 1_555 A MSE 123 N B ? A GLY 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A MSE 123 C A ? ? 1_555 A PRO 124 N ? ? A MSE 104 A PRO 105 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale12 covale both ? A MSE 123 C B ? ? 1_555 A PRO 124 N ? ? A MSE 104 A PRO 105 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale13 covale both ? A ASN 151 C ? ? ? 1_555 A MSE 152 N A ? A ASN 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? A ASN 151 C ? ? ? 1_555 A MSE 152 N B ? A ASN 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale15 covale both ? A MSE 152 C A ? ? 1_555 A PRO 153 N ? ? A MSE 133 A PRO 134 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale16 covale both ? A MSE 152 C B ? ? 1_555 A PRO 153 N ? ? A MSE 133 A PRO 134 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale17 covale both ? B GLY 19 C ? ? ? 1_555 B MSE 20 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? B MSE 20 C ? ? ? 1_555 B TYR 21 N ? ? B MSE 1 B TYR 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? B TYR 61 C ? ? ? 1_555 B MSE 62 N ? ? B TYR 42 B MSE 43 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale20 covale both ? B MSE 62 C ? ? ? 1_555 B GLN 63 N A ? B MSE 43 B GLN 44 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale21 covale both ? B MSE 62 C ? ? ? 1_555 B GLN 63 N B ? B MSE 43 B GLN 44 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale22 covale both ? B GLU 116 C ? ? ? 1_555 B MSE 117 N ? ? B GLU 97 B MSE 98 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale23 covale both ? B MSE 117 C ? ? ? 1_555 B SER 118 N ? ? B MSE 98 B SER 99 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? B SER 118 C ? ? ? 1_555 B MSE 119 N ? ? B SER 99 B MSE 100 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale25 covale both ? B MSE 119 C ? ? ? 1_555 B ILE 120 N ? ? B MSE 100 B ILE 101 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale26 covale both ? B GLY 122 C ? ? ? 1_555 B MSE 123 N A ? B GLY 103 B MSE 104 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale27 covale both ? B GLY 122 C ? ? ? 1_555 B MSE 123 N B ? B GLY 103 B MSE 104 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale28 covale both ? B MSE 123 C A ? ? 1_555 B PRO 124 N ? ? B MSE 104 B PRO 105 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale29 covale both ? B MSE 123 C B ? ? 1_555 B PRO 124 N ? ? B MSE 104 B PRO 105 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale30 covale both ? B ASN 151 C ? ? ? 1_555 B MSE 152 N ? ? B ASN 132 B MSE 133 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale31 covale both ? B MSE 152 C ? ? ? 1_555 B PRO 153 N ? ? B MSE 133 B PRO 134 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 20 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 62 ? . . . . MSE A 43 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 117 ? . . . . MSE A 98 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 119 ? . . . . MSE A 100 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 123 A . . . . MSE A 104 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 123 B . . . . MSE A 104 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 152 A . . . . MSE A 133 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE A 152 B . . . . MSE A 133 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 9 MSE B 20 ? . . . . MSE B 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 10 MSE B 62 ? . . . . MSE B 43 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 11 MSE B 117 ? . . . . MSE B 98 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 12 MSE B 119 ? . . . . MSE B 100 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 13 MSE B 123 A . . . . MSE B 104 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 14 MSE B 123 B . . . . MSE B 104 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 15 MSE B 152 ? . . . . MSE B 133 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 25 ? GLY A 29 ? VAL A 6 GLY A 10 A 2 GLN A 63 ? ALA A 67 ? GLN A 44 ALA A 48 A 3 SER A 128 ? SER A 141 ? SER A 109 SER A 122 A 4 TYR A 82 ? ILE A 97 ? TYR A 63 ILE A 78 A 5 GLY A 101 ? GLY A 109 ? GLY A 82 GLY A 90 B 1 GLN A 72 ? LEU A 74 ? GLN A 53 LEU A 55 B 2 SER A 128 ? SER A 141 ? SER A 109 SER A 122 B 3 TYR A 82 ? ILE A 97 ? TYR A 63 ILE A 78 B 4 ILE A 113 ? ILE A 114 ? ILE A 94 ILE A 95 C 1 VAL B 25 ? GLY B 29 ? VAL B 6 GLY B 10 C 2 GLN B 63 ? ALA B 67 ? GLN B 44 ALA B 48 C 3 THR B 135 ? SER B 141 ? THR B 116 SER B 122 C 4 TYR B 82 ? THR B 88 ? TYR B 63 THR B 69 C 5 ILE B 113 ? ILE B 114 ? ILE B 94 ILE B 95 D 1 CYS B 71 ? LEU B 74 ? CYS B 52 LEU B 55 D 2 SER B 128 ? ALA B 131 ? SER B 109 ALA B 112 D 3 GLU B 90 ? ILE B 97 ? GLU B 71 ILE B 78 D 4 GLY B 101 ? GLY B 109 ? GLY B 82 GLY B 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 28 ? N GLY A 9 O CYS A 64 ? O CYS A 45 A 2 3 N ALA A 67 ? N ALA A 48 O THR A 135 ? O THR A 116 A 3 4 O SER A 128 ? O SER A 109 N ILE A 94 ? N ILE A 75 A 4 5 N ILE A 97 ? N ILE A 78 O GLY A 101 ? O GLY A 82 B 1 2 N LEU A 74 ? N LEU A 55 O CYS A 129 ? O CYS A 110 B 2 3 O SER A 128 ? O SER A 109 N ILE A 94 ? N ILE A 75 B 3 4 N LEU A 84 ? N LEU A 65 O ILE A 114 ? O ILE A 95 C 1 2 N LEU B 27 ? N LEU B 8 O CYS B 64 ? O CYS B 45 C 2 3 N ALA B 67 ? N ALA B 48 O THR B 135 ? O THR B 116 C 3 4 O ASP B 136 ? O ASP B 117 N LEU B 87 ? N LEU B 68 C 4 5 N LEU B 84 ? N LEU B 65 O ILE B 114 ? O ILE B 95 D 1 2 N CYS B 71 ? N CYS B 52 O ALA B 131 ? O ALA B 112 D 2 3 O SER B 128 ? O SER B 109 N ILE B 94 ? N ILE B 75 D 3 4 N VAL B 93 ? N VAL B 74 O ALA B 106 ? O ALA B 87 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CMP 300 ? 14 'BINDING SITE FOR RESIDUE CMP A 300' AC2 Software B CMP 300 ? 15 'BINDING SITE FOR RESIDUE CMP B 300' AC3 Software B GOL 169 ? 7 'BINDING SITE FOR RESIDUE GOL B 169' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 VAL A 93 ? VAL A 74 . ? 1_555 ? 2 AC1 14 ALA A 106 ? ALA A 87 . ? 1_555 ? 3 AC1 14 ILE A 114 ? ILE A 95 . ? 1_555 ? 4 AC1 14 GLY A 115 ? GLY A 96 . ? 1_555 ? 5 AC1 14 GLU A 116 ? GLU A 97 . ? 1_555 ? 6 AC1 14 MSE A 117 ? MSE A 98 . ? 1_555 ? 7 AC1 14 SER A 118 ? SER A 99 . ? 1_555 ? 8 AC1 14 ARG A 125 ? ARG A 106 . ? 1_555 ? 9 AC1 14 SER A 126 ? SER A 107 . ? 1_555 ? 10 AC1 14 ALA A 127 ? ALA A 108 . ? 1_555 ? 11 AC1 14 CYS A 129 ? CYS A 110 . ? 1_555 ? 12 AC1 14 ARG A 170 ? ARG A 151 . ? 1_555 ? 13 AC1 14 SER A 174 ? SER A 155 . ? 1_555 ? 14 AC1 14 HOH F . ? HOH A 323 . ? 1_555 ? 15 AC2 15 TYR A 175 ? TYR A 156 . ? 1_555 ? 16 AC2 15 ILE B 105 ? ILE B 86 . ? 1_555 ? 17 AC2 15 ALA B 106 ? ALA B 87 . ? 1_555 ? 18 AC2 15 ILE B 114 ? ILE B 95 . ? 1_555 ? 19 AC2 15 GLY B 115 ? GLY B 96 . ? 1_555 ? 20 AC2 15 GLU B 116 ? GLU B 97 . ? 1_555 ? 21 AC2 15 MSE B 117 ? MSE B 98 . ? 1_555 ? 22 AC2 15 SER B 118 ? SER B 99 . ? 1_555 ? 23 AC2 15 ARG B 125 ? ARG B 106 . ? 1_555 ? 24 AC2 15 SER B 126 ? SER B 107 . ? 1_555 ? 25 AC2 15 ALA B 127 ? ALA B 108 . ? 1_555 ? 26 AC2 15 CYS B 129 ? CYS B 110 . ? 1_555 ? 27 AC2 15 ARG B 170 ? ARG B 151 . ? 1_555 ? 28 AC2 15 SER B 174 ? SER B 155 . ? 1_555 ? 29 AC2 15 HOH G . ? HOH B 182 . ? 1_555 ? 30 AC3 7 LYS B 43 ? LYS B 24 . ? 1_555 ? 31 AC3 7 ARG B 162 ? ARG B 143 . ? 1_555 ? 32 AC3 7 GLN B 165 ? GLN B 146 . ? 1_555 ? 33 AC3 7 LEU B 166 ? LEU B 147 . ? 1_555 ? 34 AC3 7 HOH G . ? HOH B 176 . ? 1_555 ? 35 AC3 7 HOH G . ? HOH B 234 . ? 1_555 ? 36 AC3 7 HOH G . ? HOH B 271 . ? 1_555 ? # _pdbx_entry_details.entry_id 3GYD _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 27 ? ? 72.58 -45.30 2 1 ASP A 62 ? A -89.74 36.15 3 1 ASN A 80 ? ? 87.38 -43.70 4 1 LEU B 27 ? ? 67.03 -21.30 5 1 ASN B 80 ? ? 72.68 -2.37 # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 62 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 117 A MSE 98 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 100 ? MET SELENOMETHIONINE 5 A MSE 123 A MSE 104 ? MET SELENOMETHIONINE 6 A MSE 152 A MSE 133 ? MET SELENOMETHIONINE 7 B MSE 20 B MSE 1 ? MET SELENOMETHIONINE 8 B MSE 62 B MSE 43 ? MET SELENOMETHIONINE 9 B MSE 117 B MSE 98 ? MET SELENOMETHIONINE 10 B MSE 119 B MSE 100 ? MET SELENOMETHIONINE 11 B MSE 123 B MSE 104 ? MET SELENOMETHIONINE 12 B MSE 152 B MSE 133 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 31.9687 10.5016 19.4490 -0.0250 -0.0788 -0.0622 -0.0012 0.0113 0.0128 2.8614 0.3213 0.6051 -0.2214 0.1732 0.0408 0.0366 -0.0589 0.0223 0.1348 -0.0168 -0.0543 -0.0204 -0.0039 0.0510 'X-RAY DIFFRACTION' 2 ? refined 7.7573 11.4070 13.5615 -0.0362 -0.0317 -0.0574 -0.0019 -0.0069 -0.0060 3.1821 0.2948 0.8742 -0.1665 0.1762 0.0478 0.0419 -0.0257 -0.0162 0.3912 -0.0487 0.0368 0.0041 0.0077 -0.0510 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' -9 ? 1 1 A A 168 . . . . ? 'X-RAY DIFFRACTION' -11 ? 2 2 B B 168 . . . . ? # _phasing.method MAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 B MSE -18 ? B MSE 1 11 1 Y 1 B GLY -17 ? B GLY 2 12 1 Y 1 B SER -16 ? B SER 3 13 1 Y 1 B ASP -15 ? B ASP 4 14 1 Y 1 B LYS -14 ? B LYS 5 15 1 Y 1 B ILE -13 ? B ILE 6 16 1 Y 1 B HIS -12 ? B HIS 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CMP P P N R 74 CMP O1P O N N 75 CMP O2P O N N 76 CMP "O5'" O N N 77 CMP "C5'" C N N 78 CMP "C4'" C N R 79 CMP "O4'" O N N 80 CMP "C3'" C N S 81 CMP "O3'" O N N 82 CMP "C2'" C N R 83 CMP "O2'" O N N 84 CMP "C1'" C N R 85 CMP N9 N Y N 86 CMP C8 C Y N 87 CMP N7 N Y N 88 CMP C5 C Y N 89 CMP C6 C Y N 90 CMP N6 N N N 91 CMP N1 N Y N 92 CMP C2 C Y N 93 CMP N3 N Y N 94 CMP C4 C Y N 95 CMP HOP2 H N N 96 CMP "H5'1" H N N 97 CMP "H5'2" H N N 98 CMP "H4'" H N N 99 CMP "H3'" H N N 100 CMP "H2'" H N N 101 CMP "HO2'" H N N 102 CMP "H1'" H N N 103 CMP H8 H N N 104 CMP HN61 H N N 105 CMP HN62 H N N 106 CMP H2 H N N 107 CYS N N N N 108 CYS CA C N R 109 CYS C C N N 110 CYS O O N N 111 CYS CB C N N 112 CYS SG S N N 113 CYS OXT O N N 114 CYS H H N N 115 CYS H2 H N N 116 CYS HA H N N 117 CYS HB2 H N N 118 CYS HB3 H N N 119 CYS HG H N N 120 CYS HXT H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 GOL C1 C N N 171 GOL O1 O N N 172 GOL C2 C N N 173 GOL O2 O N N 174 GOL C3 C N N 175 GOL O3 O N N 176 GOL H11 H N N 177 GOL H12 H N N 178 GOL HO1 H N N 179 GOL H2 H N N 180 GOL HO2 H N N 181 GOL H31 H N N 182 GOL H32 H N N 183 GOL HO3 H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MSE N N N N 278 MSE CA C N S 279 MSE C C N N 280 MSE O O N N 281 MSE OXT O N N 282 MSE CB C N N 283 MSE CG C N N 284 MSE SE SE N N 285 MSE CE C N N 286 MSE H H N N 287 MSE H2 H N N 288 MSE HA H N N 289 MSE HXT H N N 290 MSE HB2 H N N 291 MSE HB3 H N N 292 MSE HG2 H N N 293 MSE HG3 H N N 294 MSE HE1 H N N 295 MSE HE2 H N N 296 MSE HE3 H N N 297 PHE N N N N 298 PHE CA C N S 299 PHE C C N N 300 PHE O O N N 301 PHE CB C N N 302 PHE CG C Y N 303 PHE CD1 C Y N 304 PHE CD2 C Y N 305 PHE CE1 C Y N 306 PHE CE2 C Y N 307 PHE CZ C Y N 308 PHE OXT O N N 309 PHE H H N N 310 PHE H2 H N N 311 PHE HA H N N 312 PHE HB2 H N N 313 PHE HB3 H N N 314 PHE HD1 H N N 315 PHE HD2 H N N 316 PHE HE1 H N N 317 PHE HE2 H N N 318 PHE HZ H N N 319 PHE HXT H N N 320 PRO N N N N 321 PRO CA C N S 322 PRO C C N N 323 PRO O O N N 324 PRO CB C N N 325 PRO CG C N N 326 PRO CD C N N 327 PRO OXT O N N 328 PRO H H N N 329 PRO HA H N N 330 PRO HB2 H N N 331 PRO HB3 H N N 332 PRO HG2 H N N 333 PRO HG3 H N N 334 PRO HD2 H N N 335 PRO HD3 H N N 336 PRO HXT H N N 337 SER N N N N 338 SER CA C N S 339 SER C C N N 340 SER O O N N 341 SER CB C N N 342 SER OG O N N 343 SER OXT O N N 344 SER H H N N 345 SER H2 H N N 346 SER HA H N N 347 SER HB2 H N N 348 SER HB3 H N N 349 SER HG H N N 350 SER HXT H N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TYR N N N N 369 TYR CA C N S 370 TYR C C N N 371 TYR O O N N 372 TYR CB C N N 373 TYR CG C Y N 374 TYR CD1 C Y N 375 TYR CD2 C Y N 376 TYR CE1 C Y N 377 TYR CE2 C Y N 378 TYR CZ C Y N 379 TYR OH O N N 380 TYR OXT O N N 381 TYR H H N N 382 TYR H2 H N N 383 TYR HA H N N 384 TYR HB2 H N N 385 TYR HB3 H N N 386 TYR HD1 H N N 387 TYR HD2 H N N 388 TYR HE1 H N N 389 TYR HE2 H N N 390 TYR HH H N N 391 TYR HXT H N N 392 VAL N N N N 393 VAL CA C N S 394 VAL C C N N 395 VAL O O N N 396 VAL CB C N N 397 VAL CG1 C N N 398 VAL CG2 C N N 399 VAL OXT O N N 400 VAL H H N N 401 VAL H2 H N N 402 VAL HA H N N 403 VAL HB H N N 404 VAL HG11 H N N 405 VAL HG12 H N N 406 VAL HG13 H N N 407 VAL HG21 H N N 408 VAL HG22 H N N 409 VAL HG23 H N N 410 VAL HXT H N N 411 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CMP P O1P doub N N 70 CMP P O2P sing N N 71 CMP P "O5'" sing N N 72 CMP P "O3'" sing N N 73 CMP O2P HOP2 sing N N 74 CMP "O5'" "C5'" sing N N 75 CMP "C5'" "C4'" sing N N 76 CMP "C5'" "H5'1" sing N N 77 CMP "C5'" "H5'2" sing N N 78 CMP "C4'" "O4'" sing N N 79 CMP "C4'" "C3'" sing N N 80 CMP "C4'" "H4'" sing N N 81 CMP "O4'" "C1'" sing N N 82 CMP "C3'" "O3'" sing N N 83 CMP "C3'" "C2'" sing N N 84 CMP "C3'" "H3'" sing N N 85 CMP "C2'" "O2'" sing N N 86 CMP "C2'" "C1'" sing N N 87 CMP "C2'" "H2'" sing N N 88 CMP "O2'" "HO2'" sing N N 89 CMP "C1'" N9 sing N N 90 CMP "C1'" "H1'" sing N N 91 CMP N9 C8 sing Y N 92 CMP N9 C4 sing Y N 93 CMP C8 N7 doub Y N 94 CMP C8 H8 sing N N 95 CMP N7 C5 sing Y N 96 CMP C5 C6 sing Y N 97 CMP C5 C4 doub Y N 98 CMP C6 N6 sing N N 99 CMP C6 N1 doub Y N 100 CMP N6 HN61 sing N N 101 CMP N6 HN62 sing N N 102 CMP N1 C2 sing Y N 103 CMP C2 N3 doub Y N 104 CMP C2 H2 sing N N 105 CMP N3 C4 sing Y N 106 CYS N CA sing N N 107 CYS N H sing N N 108 CYS N H2 sing N N 109 CYS CA C sing N N 110 CYS CA CB sing N N 111 CYS CA HA sing N N 112 CYS C O doub N N 113 CYS C OXT sing N N 114 CYS CB SG sing N N 115 CYS CB HB2 sing N N 116 CYS CB HB3 sing N N 117 CYS SG HG sing N N 118 CYS OXT HXT sing N N 119 GLN N CA sing N N 120 GLN N H sing N N 121 GLN N H2 sing N N 122 GLN CA C sing N N 123 GLN CA CB sing N N 124 GLN CA HA sing N N 125 GLN C O doub N N 126 GLN C OXT sing N N 127 GLN CB CG sing N N 128 GLN CB HB2 sing N N 129 GLN CB HB3 sing N N 130 GLN CG CD sing N N 131 GLN CG HG2 sing N N 132 GLN CG HG3 sing N N 133 GLN CD OE1 doub N N 134 GLN CD NE2 sing N N 135 GLN NE2 HE21 sing N N 136 GLN NE2 HE22 sing N N 137 GLN OXT HXT sing N N 138 GLU N CA sing N N 139 GLU N H sing N N 140 GLU N H2 sing N N 141 GLU CA C sing N N 142 GLU CA CB sing N N 143 GLU CA HA sing N N 144 GLU C O doub N N 145 GLU C OXT sing N N 146 GLU CB CG sing N N 147 GLU CB HB2 sing N N 148 GLU CB HB3 sing N N 149 GLU CG CD sing N N 150 GLU CG HG2 sing N N 151 GLU CG HG3 sing N N 152 GLU CD OE1 doub N N 153 GLU CD OE2 sing N N 154 GLU OE2 HE2 sing N N 155 GLU OXT HXT sing N N 156 GLY N CA sing N N 157 GLY N H sing N N 158 GLY N H2 sing N N 159 GLY CA C sing N N 160 GLY CA HA2 sing N N 161 GLY CA HA3 sing N N 162 GLY C O doub N N 163 GLY C OXT sing N N 164 GLY OXT HXT sing N N 165 GOL C1 O1 sing N N 166 GOL C1 C2 sing N N 167 GOL C1 H11 sing N N 168 GOL C1 H12 sing N N 169 GOL O1 HO1 sing N N 170 GOL C2 O2 sing N N 171 GOL C2 C3 sing N N 172 GOL C2 H2 sing N N 173 GOL O2 HO2 sing N N 174 GOL C3 O3 sing N N 175 GOL C3 H31 sing N N 176 GOL C3 H32 sing N N 177 GOL O3 HO3 sing N N 178 HIS N CA sing N N 179 HIS N H sing N N 180 HIS N H2 sing N N 181 HIS CA C sing N N 182 HIS CA CB sing N N 183 HIS CA HA sing N N 184 HIS C O doub N N 185 HIS C OXT sing N N 186 HIS CB CG sing N N 187 HIS CB HB2 sing N N 188 HIS CB HB3 sing N N 189 HIS CG ND1 sing Y N 190 HIS CG CD2 doub Y N 191 HIS ND1 CE1 doub Y N 192 HIS ND1 HD1 sing N N 193 HIS CD2 NE2 sing Y N 194 HIS CD2 HD2 sing N N 195 HIS CE1 NE2 sing Y N 196 HIS CE1 HE1 sing N N 197 HIS NE2 HE2 sing N N 198 HIS OXT HXT sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 ILE N CA sing N N 202 ILE N H sing N N 203 ILE N H2 sing N N 204 ILE CA C sing N N 205 ILE CA CB sing N N 206 ILE CA HA sing N N 207 ILE C O doub N N 208 ILE C OXT sing N N 209 ILE CB CG1 sing N N 210 ILE CB CG2 sing N N 211 ILE CB HB sing N N 212 ILE CG1 CD1 sing N N 213 ILE CG1 HG12 sing N N 214 ILE CG1 HG13 sing N N 215 ILE CG2 HG21 sing N N 216 ILE CG2 HG22 sing N N 217 ILE CG2 HG23 sing N N 218 ILE CD1 HD11 sing N N 219 ILE CD1 HD12 sing N N 220 ILE CD1 HD13 sing N N 221 ILE OXT HXT sing N N 222 LEU N CA sing N N 223 LEU N H sing N N 224 LEU N H2 sing N N 225 LEU CA C sing N N 226 LEU CA CB sing N N 227 LEU CA HA sing N N 228 LEU C O doub N N 229 LEU C OXT sing N N 230 LEU CB CG sing N N 231 LEU CB HB2 sing N N 232 LEU CB HB3 sing N N 233 LEU CG CD1 sing N N 234 LEU CG CD2 sing N N 235 LEU CG HG sing N N 236 LEU CD1 HD11 sing N N 237 LEU CD1 HD12 sing N N 238 LEU CD1 HD13 sing N N 239 LEU CD2 HD21 sing N N 240 LEU CD2 HD22 sing N N 241 LEU CD2 HD23 sing N N 242 LEU OXT HXT sing N N 243 LYS N CA sing N N 244 LYS N H sing N N 245 LYS N H2 sing N N 246 LYS CA C sing N N 247 LYS CA CB sing N N 248 LYS CA HA sing N N 249 LYS C O doub N N 250 LYS C OXT sing N N 251 LYS CB CG sing N N 252 LYS CB HB2 sing N N 253 LYS CB HB3 sing N N 254 LYS CG CD sing N N 255 LYS CG HG2 sing N N 256 LYS CG HG3 sing N N 257 LYS CD CE sing N N 258 LYS CD HD2 sing N N 259 LYS CD HD3 sing N N 260 LYS CE NZ sing N N 261 LYS CE HE2 sing N N 262 LYS CE HE3 sing N N 263 LYS NZ HZ1 sing N N 264 LYS NZ HZ2 sing N N 265 LYS NZ HZ3 sing N N 266 LYS OXT HXT sing N N 267 MSE N CA sing N N 268 MSE N H sing N N 269 MSE N H2 sing N N 270 MSE CA C sing N N 271 MSE CA CB sing N N 272 MSE CA HA sing N N 273 MSE C O doub N N 274 MSE C OXT sing N N 275 MSE OXT HXT sing N N 276 MSE CB CG sing N N 277 MSE CB HB2 sing N N 278 MSE CB HB3 sing N N 279 MSE CG SE sing N N 280 MSE CG HG2 sing N N 281 MSE CG HG3 sing N N 282 MSE SE CE sing N N 283 MSE CE HE1 sing N N 284 MSE CE HE2 sing N N 285 MSE CE HE3 sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PRO N CA sing N N 310 PRO N CD sing N N 311 PRO N H sing N N 312 PRO CA C sing N N 313 PRO CA CB sing N N 314 PRO CA HA sing N N 315 PRO C O doub N N 316 PRO C OXT sing N N 317 PRO CB CG sing N N 318 PRO CB HB2 sing N N 319 PRO CB HB3 sing N N 320 PRO CG CD sing N N 321 PRO CG HG2 sing N N 322 PRO CG HG3 sing N N 323 PRO CD HD2 sing N N 324 PRO CD HD3 sing N N 325 PRO OXT HXT sing N N 326 SER N CA sing N N 327 SER N H sing N N 328 SER N H2 sing N N 329 SER CA C sing N N 330 SER CA CB sing N N 331 SER CA HA sing N N 332 SER C O doub N N 333 SER C OXT sing N N 334 SER CB OG sing N N 335 SER CB HB2 sing N N 336 SER CB HB3 sing N N 337 SER OG HG sing N N 338 SER OXT HXT sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TYR N CA sing N N 356 TYR N H sing N N 357 TYR N H2 sing N N 358 TYR CA C sing N N 359 TYR CA CB sing N N 360 TYR CA HA sing N N 361 TYR C O doub N N 362 TYR C OXT sing N N 363 TYR CB CG sing N N 364 TYR CB HB2 sing N N 365 TYR CB HB3 sing N N 366 TYR CG CD1 doub Y N 367 TYR CG CD2 sing Y N 368 TYR CD1 CE1 sing Y N 369 TYR CD1 HD1 sing N N 370 TYR CD2 CE2 doub Y N 371 TYR CD2 HD2 sing N N 372 TYR CE1 CZ doub Y N 373 TYR CE1 HE1 sing N N 374 TYR CE2 CZ sing Y N 375 TYR CE2 HE2 sing N N 376 TYR CZ OH sing N N 377 TYR OH HH sing N N 378 TYR OXT HXT sing N N 379 VAL N CA sing N N 380 VAL N H sing N N 381 VAL N H2 sing N N 382 VAL CA C sing N N 383 VAL CA CB sing N N 384 VAL CA HA sing N N 385 VAL C O doub N N 386 VAL C OXT sing N N 387 VAL CB CG1 sing N N 388 VAL CB CG2 sing N N 389 VAL CB HB sing N N 390 VAL CG1 HG11 sing N N 391 VAL CG1 HG12 sing N N 392 VAL CG1 HG13 sing N N 393 VAL CG2 HG21 sing N N 394 VAL CG2 HG22 sing N N 395 VAL CG2 HG23 sing N N 396 VAL OXT HXT sing N N 397 # _atom_sites.entry_id 3GYD _atom_sites.fract_transf_matrix[1][1] 0.016658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003494 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025160 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014396 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_