data_3GYH # _entry.id 3GYH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GYH pdb_00003gyh 10.2210/pdb3gyh/pdb NDB PD1293 ? ? RCSB RCSB052464 ? ? WWPDB D_1000052464 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_ref_seq_dif.details' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3GYH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GVA 'Same protein without DNA' unspecified PDB 3GX4 'Same protein with DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tubbs, J.L.' 1 'Arvai, A.S.' 2 'Tainer, J.A.' 3 'Shin, D.S.' 4 # _citation.id primary _citation.title 'Flipping of alkylated DNA damage bridges base and nucleotide excision repair.' _citation.journal_abbrev Nature _citation.journal_volume 459 _citation.page_first 808 _citation.page_last 813 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19516334 _citation.pdbx_database_id_DOI 10.1038/nature08076 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tubbs, J.L.' 1 ? primary 'Latypov, V.' 2 ? primary 'Kanugula, S.' 3 ? primary 'Butt, A.' 4 ? primary 'Melikishvili, M.' 5 ? primary 'Kraehenbuehl, R.' 6 ? primary 'Fleck, O.' 7 ? primary 'Marriott, A.' 8 ? primary 'Watson, A.J.' 9 ? primary 'Verbeek, B.' 10 ? primary 'McGown, G.' 11 ? primary 'Thorncroft, M.' 12 ? primary 'Santibanez-Koref, M.F.' 13 ? primary 'Millington, C.' 14 ? primary 'Arvai, A.S.' 15 ? primary 'Kroeger, M.D.' 16 ? primary 'Peterson, L.A.' 17 ? primary 'Williams, D.M.' 18 ? primary 'Fried, M.G.' 19 ? primary 'Margison, G.P.' 20 ? primary 'Pegg, A.E.' 21 ? primary 'Tainer, J.A.' 22 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkyltransferase-like protein 1' 13662.412 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*TP*GP*GP*CP*TP*AP*GP*TP*A)-3') ; 3991.610 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') ; 3951.586 1 ? ? ? ? 4 non-polymer syn 1-PYRIDIN-3-YLBUTAN-1-ONE 149.190 1 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; X ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DA)(DT)(DG)(DG)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGGCTAGTA Y ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)' CTACTAGCCATGG Z ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1-PYRIDIN-3-YLBUTAN-1-ONE PBO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 PHE n 1 7 TYR n 1 8 THR n 1 9 LYS n 1 10 VAL n 1 11 TYR n 1 12 ASP n 1 13 ALA n 1 14 VAL n 1 15 CYS n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 TYR n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 THR n 1 25 TYR n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 GLY n 1 34 MET n 1 35 PRO n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 VAL n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 HIS n 1 48 LEU n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 HIS n 1 54 VAL n 1 55 PRO n 1 56 TRP n 1 57 HIS n 1 58 ARG n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ARG n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 ASP n 1 71 ILE n 1 72 SER n 1 73 ALA n 1 74 GLY n 1 75 GLU n 1 76 GLN n 1 77 ARG n 1 78 GLN n 1 79 LYS n 1 80 ASP n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 GLU n 1 89 ILE n 1 90 TYR n 1 91 GLN n 1 92 THR n 1 93 SER n 1 94 LEU n 1 95 GLY n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 ASN n 1 101 LEU n 1 102 PRO n 1 103 GLU n 1 104 TYR n 1 105 MET n 1 106 TRP n 1 107 LYS n 1 108 PRO n 1 109 GLY n 1 110 SER n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DA n 3 7 DG n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'atl1, SPAC1250.04c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4896 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PBO non-polymer . 1-PYRIDIN-3-YLBUTAN-1-ONE ? 'C9 H11 N O' 149.190 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 ARG 2 2 2 ARG ARG X . n A 1 3 MET 3 3 3 MET MET X . n A 1 4 ASP 4 4 4 ASP ASP X . n A 1 5 GLU 5 5 5 GLU GLU X . n A 1 6 PHE 6 6 6 PHE PHE X . n A 1 7 TYR 7 7 7 TYR TYR X . n A 1 8 THR 8 8 8 THR THR X . n A 1 9 LYS 9 9 9 LYS LYS X . n A 1 10 VAL 10 10 10 VAL VAL X . n A 1 11 TYR 11 11 11 TYR TYR X . n A 1 12 ASP 12 12 12 ASP ASP X . n A 1 13 ALA 13 13 13 ALA ALA X . n A 1 14 VAL 14 14 14 VAL VAL X . n A 1 15 CYS 15 15 15 CYS CYS X . n A 1 16 GLU 16 16 16 GLU GLU X . n A 1 17 ILE 17 17 17 ILE ILE X . n A 1 18 PRO 18 18 18 PRO PRO X . n A 1 19 TYR 19 19 19 TYR TYR X . n A 1 20 GLY 20 20 20 GLY GLY X . n A 1 21 LYS 21 21 21 LYS LYS X . n A 1 22 VAL 22 22 22 VAL VAL X . n A 1 23 SER 23 23 23 SER SER X . n A 1 24 THR 24 24 24 THR THR X . n A 1 25 TYR 25 25 25 TYR TYR X . n A 1 26 GLY 26 26 26 GLY GLY X . n A 1 27 GLU 27 27 27 GLU GLU X . n A 1 28 ILE 28 28 28 ILE ILE X . n A 1 29 ALA 29 29 29 ALA ALA X . n A 1 30 ARG 30 30 30 ARG ARG X . n A 1 31 TYR 31 31 31 TYR TYR X . n A 1 32 VAL 32 32 32 VAL VAL X . n A 1 33 GLY 33 33 33 GLY GLY X . n A 1 34 MET 34 34 34 MET MET X . n A 1 35 PRO 35 35 35 PRO PRO X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 TYR 37 37 37 TYR TYR X . n A 1 38 ALA 38 38 38 ALA ALA X . n A 1 39 ARG 39 39 39 ARG ARG X . n A 1 40 GLN 40 40 40 GLN GLN X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 GLY 42 42 42 GLY GLY X . n A 1 43 GLN 43 43 43 GLN GLN X . n A 1 44 ALA 44 44 44 ALA ALA X . n A 1 45 MET 45 45 45 MET MET X . n A 1 46 LYS 46 46 46 LYS LYS X . n A 1 47 HIS 47 47 47 HIS HIS X . n A 1 48 LEU 48 48 48 LEU LEU X . n A 1 49 HIS 49 49 49 HIS HIS X . n A 1 50 PRO 50 50 50 PRO PRO X . n A 1 51 GLU 51 51 51 GLU GLU X . n A 1 52 THR 52 52 52 THR THR X . n A 1 53 HIS 53 53 53 HIS HIS X . n A 1 54 VAL 54 54 54 VAL VAL X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 TRP 56 56 56 TRP TRP X . n A 1 57 HIS 57 57 57 HIS HIS X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 VAL 59 59 59 VAL VAL X . n A 1 60 ILE 60 60 60 ILE ILE X . n A 1 61 ASN 61 61 61 ASN ASN X . n A 1 62 SER 62 62 62 SER SER X . n A 1 63 ARG 63 63 63 ARG ARG X . n A 1 64 GLY 64 64 64 GLY GLY X . n A 1 65 THR 65 65 65 THR THR X . n A 1 66 ILE 66 66 66 ILE ILE X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 LYS 68 68 68 LYS LYS X . n A 1 69 ARG 69 69 69 ARG ARG X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 ILE 71 71 71 ILE ILE X . n A 1 72 SER 72 72 72 SER SER X . n A 1 73 ALA 73 73 73 ALA ALA X . n A 1 74 GLY 74 74 74 GLY GLY X . n A 1 75 GLU 75 75 75 GLU GLU X . n A 1 76 GLN 76 76 76 GLN GLN X . n A 1 77 ARG 77 77 77 ARG ARG X . n A 1 78 GLN 78 78 78 GLN GLN X . n A 1 79 LYS 79 79 79 LYS LYS X . n A 1 80 ASP 80 80 80 ASP ASP X . n A 1 81 ARG 81 81 81 ARG ARG X . n A 1 82 LEU 82 82 82 LEU LEU X . n A 1 83 GLU 83 83 83 GLU GLU X . n A 1 84 GLU 84 84 84 GLU GLU X . n A 1 85 GLU 85 85 85 GLU GLU X . n A 1 86 GLY 86 86 86 GLY GLY X . n A 1 87 VAL 87 87 87 VAL VAL X . n A 1 88 GLU 88 88 88 GLU GLU X . n A 1 89 ILE 89 89 89 ILE ILE X . n A 1 90 TYR 90 90 90 TYR TYR X . n A 1 91 GLN 91 91 91 GLN GLN X . n A 1 92 THR 92 92 92 THR THR X . n A 1 93 SER 93 93 93 SER SER X . n A 1 94 LEU 94 94 94 LEU LEU X . n A 1 95 GLY 95 95 95 GLY GLY X . n A 1 96 GLU 96 96 96 GLU GLU X . n A 1 97 TYR 97 97 97 TYR TYR X . n A 1 98 LYS 98 98 98 LYS LYS X . n A 1 99 LEU 99 99 99 LEU LEU X . n A 1 100 ASN 100 100 100 ASN ASN X . n A 1 101 LEU 101 101 101 LEU LEU X . n A 1 102 PRO 102 102 102 PRO PRO X . n A 1 103 GLU 103 103 103 GLU GLU X . n A 1 104 TYR 104 104 104 TYR TYR X . n A 1 105 MET 105 105 105 MET MET X . n A 1 106 TRP 106 106 106 TRP TRP X . n A 1 107 LYS 107 107 107 LYS LYS X . n A 1 108 PRO 108 108 108 PRO PRO X . n A 1 109 GLY 109 109 ? ? ? X . n A 1 110 SER 110 110 ? ? ? X . n A 1 111 HIS 111 111 ? ? ? X . n A 1 112 HIS 112 112 ? ? ? X . n A 1 113 HIS 113 113 ? ? ? X . n A 1 114 HIS 114 114 ? ? ? X . n A 1 115 HIS 115 115 ? ? ? X . n A 1 116 HIS 116 116 ? ? ? X . n B 2 1 DG 1 201 201 DG DG Y . n B 2 2 DC 2 202 202 DC DC Y . n B 2 3 DC 3 203 203 DC DC Y . n B 2 4 DA 4 204 204 DA DA Y . n B 2 5 DT 5 205 205 DT DT Y . n B 2 6 DG 6 206 206 DG DG Y . n B 2 7 DG 7 207 207 DG DG Y . n B 2 8 DC 8 208 208 DC DC Y . n B 2 9 DT 9 209 209 DT DT Y . n B 2 10 DA 10 210 210 DA DA Y . n B 2 11 DG 11 211 211 DG DG Y . n B 2 12 DT 12 212 212 DT DT Y . n B 2 13 DA 13 213 213 DA DA Y . n C 3 1 DC 1 214 214 DC DC Z . n C 3 2 DT 2 215 215 DT DT Z . n C 3 3 DA 3 216 216 DA DA Z . n C 3 4 DC 4 217 217 DC DC Z . n C 3 5 DT 5 218 218 DT DT Z . n C 3 6 DA 6 219 219 DA DA Z . n C 3 7 DG 7 220 220 DG DG Z . n C 3 8 DC 8 221 221 DC DC Z . n C 3 9 DC 9 222 222 DC DC Z . n C 3 10 DA 10 223 223 DA DA Z . n C 3 11 DT 11 224 224 DT DT Z . n C 3 12 DG 12 225 225 DG DG Z . n C 3 13 DG 13 226 226 DG DG Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PBO 1 200 200 PBO PBO Y . E 5 HOH 1 301 301 HOH HOH X . E 5 HOH 2 302 302 HOH HOH X . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 # _cell.length_a 60.180 _cell.length_b 60.180 _cell.length_c 235.546 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3GYH _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3GYH _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 178 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3GYH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2008-05-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 # _reflns.entry_id 3GYH _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 35 _reflns.number_all ? _reflns.number_obs 6078 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3GYH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.800 _refine.ls_d_res_low 34.940 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.930 _refine.ls_number_reflns_obs 6078 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.243 _refine.ls_R_factor_R_work 0.240 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.285 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.600 _refine.ls_number_reflns_R_free 341 _refine.ls_number_reflns_R_work 5738 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 84.271 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 5.590 _refine.aniso_B[2][2] 5.590 _refine.aniso_B[3][3] -8.380 _refine.aniso_B[1][2] 2.790 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 6.232 _refine.pdbx_overall_ESU_R_Free 0.414 _refine.overall_SU_ML 0.352 _refine.overall_SU_B 42.393 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 120.16 _refine.B_iso_min 44.71 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1430 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 34.940 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1515 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2146 1.308 2.398 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 107 9.552 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 46 39.370 23.043 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 163 24.108 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 22.091 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 225 0.082 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 987 0.004 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 537 1.000 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 869 1.951 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 978 2.840 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 1277 4.494 4.500 ? ? # _refine_ls_shell.d_res_high 2.8 _refine_ls_shell.d_res_low 2.868 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 73.100 _refine_ls_shell.number_reflns_R_work 225 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.445 _refine_ls_shell.R_factor_R_free 0.638 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 6 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 231 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GYH _struct.title 'Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GYH _struct_keywords.text 'DNA damage, DNA repair, DNA-binding, DNA BINDING PROTEIN-DNA COMPLEX' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATL1_SCHPO Q9UTN9 1 ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKP ; 1 ? 2 PDB 3GYH 3GYH 2 ? ? ? 3 PDB 3GYH 3GYH 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GYH X 1 ? 108 ? Q9UTN9 1 ? 108 ? 1 108 2 2 3GYH Y 1 ? 13 ? 3GYH 201 ? 213 ? 201 213 3 3 3GYH Z 1 ? 13 ? 3GYH 214 ? 226 ? 214 226 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GYH GLY X 109 ? UNP Q9UTN9 ? ? 'expression tag' 109 1 1 3GYH SER X 110 ? UNP Q9UTN9 ? ? 'expression tag' 110 2 1 3GYH HIS X 111 ? UNP Q9UTN9 ? ? 'expression tag' 111 3 1 3GYH HIS X 112 ? UNP Q9UTN9 ? ? 'expression tag' 112 4 1 3GYH HIS X 113 ? UNP Q9UTN9 ? ? 'expression tag' 113 5 1 3GYH HIS X 114 ? UNP Q9UTN9 ? ? 'expression tag' 114 6 1 3GYH HIS X 115 ? UNP Q9UTN9 ? ? 'expression tag' 115 7 1 3GYH HIS X 116 ? UNP Q9UTN9 ? ? 'expression tag' 116 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3530 ? 1 MORE -15 ? 1 'SSA (A^2)' 9650 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? CYS A 15 ? ARG X 2 CYS X 15 1 ? 14 HELX_P HELX_P2 2 TYR A 25 ? VAL A 32 ? TYR X 25 VAL X 32 1 ? 8 HELX_P HELX_P3 3 TYR A 37 ? HIS A 47 ? TYR X 37 HIS X 47 1 ? 11 HELX_P HELX_P4 4 PRO A 55 ? HIS A 57 ? PRO X 55 HIS X 57 5 ? 3 HELX_P HELX_P5 5 SER A 72 ? GLY A 74 ? SER X 72 GLY X 74 5 ? 3 HELX_P HELX_P6 6 GLU A 75 ? GLY A 86 ? GLU X 75 GLY X 86 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? D PBO . C10 ? ? ? 1_555 B DG 7 O6 ? ? Y PBO 200 Y DG 207 1_555 ? ? ? ? ? ? ? 1.433 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? Y DC 202 Z DG 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 12 N1 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 12 N2 ? ? Y DC 203 Z DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? Y DA 204 Z DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? Y DA 204 Z DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? Y DT 205 Z DA 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? Y DT 205 Z DA 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? Y DG 206 Z DC 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 7 N1 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 7 O6 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 7 N2 ? ? Y DC 208 Z DG 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? Y DT 209 Z DA 219 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog18 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? Y DA 210 Z DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? Y DA 210 Z DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? Y DG 211 Z DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? Y DG 211 Z DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? Y DG 211 Z DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? Y DT 212 Z DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? Y DT 212 Z DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? Y DA 213 Z DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? Y DA 213 Z DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 23 ? THR A 24 ? SER X 23 THR X 24 A 2 VAL A 59 ? ILE A 60 ? VAL X 59 ILE X 60 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 23 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id X _pdbx_struct_sheet_hbond.range_1_auth_seq_id 23 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 60 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id X _pdbx_struct_sheet_hbond.range_2_auth_seq_id 60 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id Y _struct_site.pdbx_auth_comp_id PBO _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE PBO Y 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 MET A 45 ? MET X 45 . ? 1_555 ? 2 AC1 8 LEU A 48 ? LEU X 48 . ? 1_555 ? 3 AC1 8 PRO A 50 ? PRO X 50 . ? 1_555 ? 4 AC1 8 TRP A 56 ? TRP X 56 . ? 1_555 ? 5 AC1 8 ARG A 77 ? ARG X 77 . ? 1_555 ? 6 AC1 8 ARG A 81 ? ARG X 81 . ? 1_555 ? 7 AC1 8 DG B 7 ? DG Y 207 . ? 1_555 ? 8 AC1 8 DG B 11 ? DG Y 211 . ? 8_445 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 39 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N3 _pdbx_validate_close_contact.auth_asym_id_2 Z _pdbx_validate_close_contact.auth_comp_id_2 DC _pdbx_validate_close_contact.auth_seq_id_2 221 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD2 _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 12 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 12_545 _pdbx_validate_symm_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 Y DG 207 ? ? N1 Y DG 207 ? ? 1.346 1.391 -0.045 0.007 N 2 1 C5 Y DG 207 ? ? N7 Y DG 207 ? ? 1.350 1.388 -0.038 0.006 N 3 1 N7 Y DG 207 ? ? C8 Y DG 207 ? ? 1.360 1.305 0.055 0.006 N 4 1 C6 Y DG 207 ? ? O6 Y DG 207 ? ? 1.372 1.237 0.135 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" Y DT 205 ? ? "C1'" Y DT 205 ? ? N1 Y DT 205 ? ? 103.79 108.00 -4.21 0.70 N 2 1 "C3'" Y DG 206 ? ? "O3'" Y DG 206 ? ? P Y DG 207 ? ? 111.36 119.70 -8.34 1.20 Y 3 1 "O3'" Y DG 206 ? ? P Y DG 207 ? ? OP2 Y DG 207 ? ? 139.15 110.50 28.65 1.10 Y 4 1 "O3'" Y DG 206 ? ? P Y DG 207 ? ? OP1 Y DG 207 ? ? 77.81 105.20 -27.39 2.20 Y 5 1 "O4'" Y DG 207 ? ? "C1'" Y DG 207 ? ? N9 Y DG 207 ? ? 110.59 108.30 2.29 0.30 N 6 1 C6 Y DG 207 ? ? N1 Y DG 207 ? ? C2 Y DG 207 ? ? 120.24 125.10 -4.86 0.60 N 7 1 C2 Y DG 207 ? ? N3 Y DG 207 ? ? C4 Y DG 207 ? ? 119.71 111.90 7.81 0.50 N 8 1 N3 Y DG 207 ? ? C4 Y DG 207 ? ? C5 Y DG 207 ? ? 119.42 128.60 -9.18 0.50 N 9 1 C5 Y DG 207 ? ? C6 Y DG 207 ? ? N1 Y DG 207 ? ? 118.63 111.50 7.13 0.50 N 10 1 C4 Y DG 207 ? ? C5 Y DG 207 ? ? N7 Y DG 207 ? ? 106.54 110.80 -4.26 0.40 N 11 1 C5 Y DG 207 ? ? N7 Y DG 207 ? ? C8 Y DG 207 ? ? 107.93 104.30 3.63 0.50 N 12 1 N7 Y DG 207 ? ? C8 Y DG 207 ? ? N9 Y DG 207 ? ? 108.65 113.10 -4.45 0.50 N 13 1 N9 Y DG 207 ? ? C4 Y DG 207 ? ? C5 Y DG 207 ? ? 108.31 105.40 2.91 0.40 N 14 1 N3 Y DG 207 ? ? C4 Y DG 207 ? ? N9 Y DG 207 ? ? 132.26 126.00 6.26 0.60 N 15 1 C5 Y DG 207 ? ? C6 Y DG 207 ? ? O6 Y DG 207 ? ? 120.45 128.60 -8.15 0.60 N 16 1 "C3'" Y DG 207 ? ? "O3'" Y DG 207 ? ? P Y DC 208 ? ? 106.87 119.70 -12.83 1.20 Y 17 1 "O3'" Y DG 207 ? ? P Y DC 208 ? ? OP2 Y DC 208 ? ? 126.57 110.50 16.07 1.10 Y 18 1 "O3'" Y DG 207 ? ? P Y DC 208 ? ? OP1 Y DC 208 ? ? 89.26 105.20 -15.94 2.20 Y 19 1 "O4'" Y DG 211 ? ? "C1'" Y DG 211 ? ? N9 Y DG 211 ? ? 112.16 108.30 3.86 0.30 N 20 1 "O4'" Z DC 214 ? ? "C1'" Z DC 214 ? ? N1 Z DC 214 ? ? 110.84 108.30 2.54 0.30 N 21 1 "O4'" Z DT 218 ? ? "C1'" Z DT 218 ? ? N1 Z DT 218 ? ? 112.57 108.30 4.27 0.30 N 22 1 N3 Z DT 224 ? ? C4 Z DT 224 ? ? O4 Z DT 224 ? ? 123.99 119.90 4.09 0.60 N 23 1 "O4'" Z DG 225 ? ? "C1'" Z DG 225 ? ? N9 Z DG 225 ? ? 111.06 108.30 2.76 0.30 N 24 1 "O4'" Z DG 226 ? ? "C4'" Z DG 226 ? ? "C3'" Z DG 226 ? ? 101.70 104.50 -2.80 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR X 25 ? ? -29.69 -64.48 2 1 HIS X 47 ? ? -98.31 36.11 3 1 HIS X 53 ? ? -104.84 47.22 4 1 ILE X 60 ? ? -103.02 -163.58 5 1 ILE X 71 ? ? -96.23 46.72 6 1 SER X 72 ? ? 40.39 163.35 7 1 THR X 92 ? ? -104.27 -144.18 8 1 LEU X 94 ? ? -140.22 52.47 9 1 GLU X 96 ? ? -7.11 76.52 10 1 TYR X 97 ? ? -38.59 129.23 11 1 GLU X 103 ? ? -54.45 -82.14 12 1 LYS X 107 ? ? -156.40 85.65 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 93 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LEU _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 94 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 123.74 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 28.7896 -21.3040 1.8135 0.1113 0.2578 0.2130 0.0865 0.0618 0.0360 2.0731 1.4976 4.4228 -1.0662 0.3162 -0.7987 -0.0770 0.0276 0.0493 0.2720 0.0127 -0.0510 0.0728 -0.4299 -0.1499 'X-RAY DIFFRACTION' 2 ? refined 29.7547 -38.3685 6.7585 0.2658 0.2788 0.2015 -0.0357 0.1401 -0.0390 1.3533 3.5641 6.1664 0.7280 1.1953 1.5781 -0.3327 0.2228 0.1099 0.0133 0.0125 -0.0374 -0.1573 0.4091 -0.2994 'X-RAY DIFFRACTION' 3 ? refined 29.8901 -38.9211 6.0434 0.1132 0.1479 0.1272 0.0223 0.0379 0.0278 1.3445 1.5510 10.1397 0.1743 -1.9671 0.4917 0.0126 -0.0488 0.0362 0.2219 0.2456 -0.1716 0.0988 0.6378 -0.6942 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 108 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 Y 201 Y 213 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 Z 214 Z 226 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X GLY 109 ? A GLY 109 2 1 Y 1 X SER 110 ? A SER 110 3 1 Y 1 X HIS 111 ? A HIS 111 4 1 Y 1 X HIS 112 ? A HIS 112 5 1 Y 1 X HIS 113 ? A HIS 113 6 1 Y 1 X HIS 114 ? A HIS 114 7 1 Y 1 X HIS 115 ? A HIS 115 8 1 Y 1 X HIS 116 ? A HIS 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PBO C10 C N N 393 PBO C11 C N N 394 PBO C12 C N N 395 PBO C13 C N N 396 PBO C14 C Y N 397 PBO C15 C Y N 398 PBO C16 C Y N 399 PBO C17 C Y N 400 PBO "N1'" N Y N 401 PBO C18 C Y N 402 PBO O13 O N N 403 PBO H103 H N N 404 PBO H101 H N N 405 PBO H102 H N N 406 PBO H111 H N N 407 PBO H112 H N N 408 PBO H121 H N N 409 PBO H122 H N N 410 PBO H15 H N N 411 PBO H16 H N N 412 PBO H17 H N N 413 PBO H18 H N N 414 PHE N N N N 415 PHE CA C N S 416 PHE C C N N 417 PHE O O N N 418 PHE CB C N N 419 PHE CG C Y N 420 PHE CD1 C Y N 421 PHE CD2 C Y N 422 PHE CE1 C Y N 423 PHE CE2 C Y N 424 PHE CZ C Y N 425 PHE OXT O N N 426 PHE H H N N 427 PHE H2 H N N 428 PHE HA H N N 429 PHE HB2 H N N 430 PHE HB3 H N N 431 PHE HD1 H N N 432 PHE HD2 H N N 433 PHE HE1 H N N 434 PHE HE2 H N N 435 PHE HZ H N N 436 PHE HXT H N N 437 PRO N N N N 438 PRO CA C N S 439 PRO C C N N 440 PRO O O N N 441 PRO CB C N N 442 PRO CG C N N 443 PRO CD C N N 444 PRO OXT O N N 445 PRO H H N N 446 PRO HA H N N 447 PRO HB2 H N N 448 PRO HB3 H N N 449 PRO HG2 H N N 450 PRO HG3 H N N 451 PRO HD2 H N N 452 PRO HD3 H N N 453 PRO HXT H N N 454 SER N N N N 455 SER CA C N S 456 SER C C N N 457 SER O O N N 458 SER CB C N N 459 SER OG O N N 460 SER OXT O N N 461 SER H H N N 462 SER H2 H N N 463 SER HA H N N 464 SER HB2 H N N 465 SER HB3 H N N 466 SER HG H N N 467 SER HXT H N N 468 THR N N N N 469 THR CA C N S 470 THR C C N N 471 THR O O N N 472 THR CB C N R 473 THR OG1 O N N 474 THR CG2 C N N 475 THR OXT O N N 476 THR H H N N 477 THR H2 H N N 478 THR HA H N N 479 THR HB H N N 480 THR HG1 H N N 481 THR HG21 H N N 482 THR HG22 H N N 483 THR HG23 H N N 484 THR HXT H N N 485 TRP N N N N 486 TRP CA C N S 487 TRP C C N N 488 TRP O O N N 489 TRP CB C N N 490 TRP CG C Y N 491 TRP CD1 C Y N 492 TRP CD2 C Y N 493 TRP NE1 N Y N 494 TRP CE2 C Y N 495 TRP CE3 C Y N 496 TRP CZ2 C Y N 497 TRP CZ3 C Y N 498 TRP CH2 C Y N 499 TRP OXT O N N 500 TRP H H N N 501 TRP H2 H N N 502 TRP HA H N N 503 TRP HB2 H N N 504 TRP HB3 H N N 505 TRP HD1 H N N 506 TRP HE1 H N N 507 TRP HE3 H N N 508 TRP HZ2 H N N 509 TRP HZ3 H N N 510 TRP HH2 H N N 511 TRP HXT H N N 512 TYR N N N N 513 TYR CA C N S 514 TYR C C N N 515 TYR O O N N 516 TYR CB C N N 517 TYR CG C Y N 518 TYR CD1 C Y N 519 TYR CD2 C Y N 520 TYR CE1 C Y N 521 TYR CE2 C Y N 522 TYR CZ C Y N 523 TYR OH O N N 524 TYR OXT O N N 525 TYR H H N N 526 TYR H2 H N N 527 TYR HA H N N 528 TYR HB2 H N N 529 TYR HB3 H N N 530 TYR HD1 H N N 531 TYR HD2 H N N 532 TYR HE1 H N N 533 TYR HE2 H N N 534 TYR HH H N N 535 TYR HXT H N N 536 VAL N N N N 537 VAL CA C N S 538 VAL C C N N 539 VAL O O N N 540 VAL CB C N N 541 VAL CG1 C N N 542 VAL CG2 C N N 543 VAL OXT O N N 544 VAL H H N N 545 VAL H2 H N N 546 VAL HA H N N 547 VAL HB H N N 548 VAL HG11 H N N 549 VAL HG12 H N N 550 VAL HG13 H N N 551 VAL HG21 H N N 552 VAL HG22 H N N 553 VAL HG23 H N N 554 VAL HXT H N N 555 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PBO C10 C11 sing N N 386 PBO C10 H103 sing N N 387 PBO C10 H101 sing N N 388 PBO C10 H102 sing N N 389 PBO C11 C12 sing N N 390 PBO C11 H111 sing N N 391 PBO C11 H112 sing N N 392 PBO C12 C13 sing N N 393 PBO C12 H121 sing N N 394 PBO C12 H122 sing N N 395 PBO C13 C14 sing N N 396 PBO C13 O13 doub N N 397 PBO C14 C15 doub Y N 398 PBO C14 C18 sing Y N 399 PBO C15 C16 sing Y N 400 PBO C15 H15 sing N N 401 PBO C16 C17 doub Y N 402 PBO C16 H16 sing N N 403 PBO C17 "N1'" sing Y N 404 PBO C17 H17 sing N N 405 PBO "N1'" C18 doub Y N 406 PBO C18 H18 sing N N 407 PHE N CA sing N N 408 PHE N H sing N N 409 PHE N H2 sing N N 410 PHE CA C sing N N 411 PHE CA CB sing N N 412 PHE CA HA sing N N 413 PHE C O doub N N 414 PHE C OXT sing N N 415 PHE CB CG sing N N 416 PHE CB HB2 sing N N 417 PHE CB HB3 sing N N 418 PHE CG CD1 doub Y N 419 PHE CG CD2 sing Y N 420 PHE CD1 CE1 sing Y N 421 PHE CD1 HD1 sing N N 422 PHE CD2 CE2 doub Y N 423 PHE CD2 HD2 sing N N 424 PHE CE1 CZ doub Y N 425 PHE CE1 HE1 sing N N 426 PHE CE2 CZ sing Y N 427 PHE CE2 HE2 sing N N 428 PHE CZ HZ sing N N 429 PHE OXT HXT sing N N 430 PRO N CA sing N N 431 PRO N CD sing N N 432 PRO N H sing N N 433 PRO CA C sing N N 434 PRO CA CB sing N N 435 PRO CA HA sing N N 436 PRO C O doub N N 437 PRO C OXT sing N N 438 PRO CB CG sing N N 439 PRO CB HB2 sing N N 440 PRO CB HB3 sing N N 441 PRO CG CD sing N N 442 PRO CG HG2 sing N N 443 PRO CG HG3 sing N N 444 PRO CD HD2 sing N N 445 PRO CD HD3 sing N N 446 PRO OXT HXT sing N N 447 SER N CA sing N N 448 SER N H sing N N 449 SER N H2 sing N N 450 SER CA C sing N N 451 SER CA CB sing N N 452 SER CA HA sing N N 453 SER C O doub N N 454 SER C OXT sing N N 455 SER CB OG sing N N 456 SER CB HB2 sing N N 457 SER CB HB3 sing N N 458 SER OG HG sing N N 459 SER OXT HXT sing N N 460 THR N CA sing N N 461 THR N H sing N N 462 THR N H2 sing N N 463 THR CA C sing N N 464 THR CA CB sing N N 465 THR CA HA sing N N 466 THR C O doub N N 467 THR C OXT sing N N 468 THR CB OG1 sing N N 469 THR CB CG2 sing N N 470 THR CB HB sing N N 471 THR OG1 HG1 sing N N 472 THR CG2 HG21 sing N N 473 THR CG2 HG22 sing N N 474 THR CG2 HG23 sing N N 475 THR OXT HXT sing N N 476 TRP N CA sing N N 477 TRP N H sing N N 478 TRP N H2 sing N N 479 TRP CA C sing N N 480 TRP CA CB sing N N 481 TRP CA HA sing N N 482 TRP C O doub N N 483 TRP C OXT sing N N 484 TRP CB CG sing N N 485 TRP CB HB2 sing N N 486 TRP CB HB3 sing N N 487 TRP CG CD1 doub Y N 488 TRP CG CD2 sing Y N 489 TRP CD1 NE1 sing Y N 490 TRP CD1 HD1 sing N N 491 TRP CD2 CE2 doub Y N 492 TRP CD2 CE3 sing Y N 493 TRP NE1 CE2 sing Y N 494 TRP NE1 HE1 sing N N 495 TRP CE2 CZ2 sing Y N 496 TRP CE3 CZ3 doub Y N 497 TRP CE3 HE3 sing N N 498 TRP CZ2 CH2 doub Y N 499 TRP CZ2 HZ2 sing N N 500 TRP CZ3 CH2 sing Y N 501 TRP CZ3 HZ3 sing N N 502 TRP CH2 HH2 sing N N 503 TRP OXT HXT sing N N 504 TYR N CA sing N N 505 TYR N H sing N N 506 TYR N H2 sing N N 507 TYR CA C sing N N 508 TYR CA CB sing N N 509 TYR CA HA sing N N 510 TYR C O doub N N 511 TYR C OXT sing N N 512 TYR CB CG sing N N 513 TYR CB HB2 sing N N 514 TYR CB HB3 sing N N 515 TYR CG CD1 doub Y N 516 TYR CG CD2 sing Y N 517 TYR CD1 CE1 sing Y N 518 TYR CD1 HD1 sing N N 519 TYR CD2 CE2 doub Y N 520 TYR CD2 HD2 sing N N 521 TYR CE1 CZ doub Y N 522 TYR CE1 HE1 sing N N 523 TYR CE2 CZ sing Y N 524 TYR CE2 HE2 sing N N 525 TYR CZ OH sing N N 526 TYR OH HH sing N N 527 TYR OXT HXT sing N N 528 VAL N CA sing N N 529 VAL N H sing N N 530 VAL N H2 sing N N 531 VAL CA C sing N N 532 VAL CA CB sing N N 533 VAL CA HA sing N N 534 VAL C O doub N N 535 VAL C OXT sing N N 536 VAL CB CG1 sing N N 537 VAL CB CG2 sing N N 538 VAL CB HB sing N N 539 VAL CG1 HG11 sing N N 540 VAL CG1 HG12 sing N N 541 VAL CG1 HG13 sing N N 542 VAL CG2 HG21 sing N N 543 VAL CG2 HG22 sing N N 544 VAL CG2 HG23 sing N N 545 VAL OXT HXT sing N N 546 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GYH 'double helix' 3GYH 'b-form double helix' 3GYH 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 13 1_555 -0.558 -0.322 0.049 -7.085 0.990 -4.900 1 Y_DC202:DG226_Z Y 202 ? Z 226 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 0.330 -0.170 0.447 -5.699 -6.803 0.872 2 Y_DC203:DG225_Z Y 203 ? Z 225 ? 19 1 1 B DA 4 1_555 C DT 11 1_555 0.197 -0.094 -0.056 1.830 -1.359 2.018 3 Y_DA204:DT224_Z Y 204 ? Z 224 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 -0.698 -0.384 -0.473 8.625 -8.850 -6.134 4 Y_DT205:DA223_Z Y 205 ? Z 223 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.381 -0.365 -0.068 7.935 3.146 4.623 5 Y_DG206:DC222_Z Y 206 ? Z 222 ? 19 1 1 B DC 8 1_555 C DG 7 1_555 -0.156 -0.290 0.002 -4.993 -1.430 1.402 6 Y_DC208:DG220_Z Y 208 ? Z 220 ? 19 1 1 B DT 9 1_555 C DA 6 1_555 -0.413 2.465 -0.244 0.085 -1.163 -101.034 7 Y_DT209:DA219_Z Y 209 ? Z 219 ? ? ? 1 B DA 10 1_555 C DT 5 1_555 0.188 -0.419 0.590 6.283 -14.002 -2.573 8 Y_DA210:DT218_Z Y 210 ? Z 218 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.095 -0.031 0.547 1.990 -12.781 -2.002 9 Y_DG211:DC217_Z Y 211 ? Z 217 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 -0.222 -0.283 -0.041 -0.117 2.693 0.017 10 Y_DT212:DA216_Z Y 212 ? Z 216 ? 20 1 1 B DA 13 1_555 C DT 2 1_555 -0.641 -0.318 0.396 4.018 4.786 -1.642 11 Y_DA213:DT215_Z Y 213 ? Z 215 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 0.728 -0.572 3.360 -2.329 4.229 38.265 -1.395 -1.394 3.233 6.420 3.536 38.558 1 YY_DC202DC203:DG225DG226_ZZ Y 202 ? Z 226 ? Y 203 ? Z 225 ? 1 B DC 3 1_555 C DG 12 1_555 B DA 4 1_555 C DT 11 1_555 -0.087 0.127 2.971 0.279 6.357 31.253 -0.825 0.204 2.938 11.649 -0.511 31.879 2 YY_DC203DA204:DT224DG225_ZZ Y 203 ? Z 225 ? Y 204 ? Z 224 ? 1 B DA 4 1_555 C DT 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.640 -1.065 3.183 1.823 2.073 25.517 -2.956 1.932 3.036 4.677 -4.111 25.664 3 YY_DA204DT205:DA223DT224_ZZ Y 204 ? Z 224 ? Y 205 ? Z 223 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 1.310 0.901 3.457 -0.173 5.462 37.535 0.636 -2.039 3.543 8.434 0.267 37.916 4 YY_DT205DG206:DC222DA223_ZZ Y 205 ? Z 223 ? Y 206 ? Z 222 ? 1 B DG 6 1_555 C DC 9 1_555 B DC 8 1_555 C DG 7 1_555 0.369 -1.594 6.886 -3.411 28.703 51.438 -4.664 -0.738 5.366 30.492 3.623 58.518 5 YY_DG206DC208:DG220DC222_ZZ Y 206 ? Z 222 ? Y 208 ? Z 220 ? 1 B DC 8 1_555 C DG 7 1_555 B DT 9 1_555 C DA 6 1_555 0.562 -1.850 3.279 5.002 1.489 80.488 -1.469 -0.304 3.275 1.151 -3.867 80.628 6 YY_DC208DT209:DA219DG220_ZZ Y 208 ? Z 220 ? Y 209 ? Z 219 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 0.013 2.007 3.252 -1.865 4.735 -10.928 -14.861 -2.024 2.166 -23.279 -9.167 -12.051 7 YY_DT209DA210:DT218DA219_ZZ Y 209 ? Z 219 ? Y 210 ? Z 218 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 0.144 -0.884 3.340 0.055 -2.229 31.825 -1.191 -0.251 3.393 -4.059 -0.101 31.901 8 YY_DA210DG211:DC217DT218_ZZ Y 210 ? Z 218 ? Y 211 ? Z 217 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 0.126 -0.928 3.364 5.542 -0.071 31.623 -1.666 0.799 3.340 -0.129 -10.072 32.093 9 YY_DG211DT212:DA216DC217_ZZ Y 211 ? Z 217 ? Y 212 ? Z 216 ? 1 B DT 12 1_555 C DA 3 1_555 B DA 13 1_555 C DT 2 1_555 0.302 -0.598 3.049 -3.878 8.185 30.428 -2.456 -1.198 2.742 15.178 7.191 31.716 10 YY_DT212DA213:DT215DA216_ZZ Y 212 ? Z 216 ? Y 213 ? Z 215 ? # _atom_sites.entry_id 3GYH _atom_sites.fract_transf_matrix[1][1] 0.016617 _atom_sites.fract_transf_matrix[1][2] 0.009594 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019187 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004245 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_