HEADER CHAPERONE 06-APR-09 3GZ1 TITLE CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH THE CHAPERONE BINDING REGION TITLE 2 OF IPAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-151; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INVASIN IPAB; COMPND 8 CHAIN: P, Q; COMPND 9 FRAGMENT: CHAPERONE BINDING REGION OF IPAB, UNP RESIDUES 51-72; COMPND 10 SYNONYM: 62 KDA ANTIGEN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: M90T; SOURCE 5 GENE: IPGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 14 ORGANISM_TAXID: 623; SOURCE 15 OTHER_DETAILS: SYNTHESIZED PEPTIDE KEYWDS TETRATRICOPEPTIDE REPEAT, TPR, CHAPERONE, CHAPERONE BINDING REGION, KEYWDS 2 VIRULENCE, MEMBRANE, SECRETED, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR M.LUNELLI,R.K.LOKAREDDY,A.ZYCHLINSKY,M.KOLBE REVDAT 6 01-NOV-23 3GZ1 1 REMARK REVDAT 5 10-NOV-21 3GZ1 1 SEQADV REVDAT 4 27-JAN-21 3GZ1 1 SOURCE REMARK REVDAT 3 13-JUL-11 3GZ1 1 VERSN REVDAT 2 07-JUL-09 3GZ1 1 JRNL REVDAT 1 16-JUN-09 3GZ1 0 JRNL AUTH M.LUNELLI,R.K.LOKAREDDY,A.ZYCHLINSKY,M.KOLBE JRNL TITL IPAB-IPGC INTERACTION DEFINES BINDING MOTIF FOR TYPE III JRNL TITL 2 SECRETION TRANSLOCATOR JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9661 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19478065 JRNL DOI 10.1073/PNAS.0812900106 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 19676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.02000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2548 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3440 ; 2.069 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 7.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;41.090 ;25.520 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;20.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1932 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1545 ; 1.343 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 2.447 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1003 ; 3.538 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 957 ; 5.863 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8121 22.7692 -0.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.2356 T22: 0.2333 REMARK 3 T33: 0.3113 T12: 0.0576 REMARK 3 T13: -0.1806 T23: -0.0745 REMARK 3 L TENSOR REMARK 3 L11: 0.4732 L22: 5.1688 REMARK 3 L33: 0.8167 L12: 1.0601 REMARK 3 L13: -0.5928 L23: -1.7703 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: 0.1687 S13: 0.0918 REMARK 3 S21: -0.3255 S22: 0.0842 S23: 1.1105 REMARK 3 S31: -0.0710 S32: -0.1865 S33: -0.2451 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1741 37.5059 -13.8216 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0695 REMARK 3 T33: 0.0314 T12: -0.0086 REMARK 3 T13: -0.0349 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5518 L22: 0.9144 REMARK 3 L33: 1.3409 L12: -0.4366 REMARK 3 L13: -0.7268 L23: 0.5951 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0231 S13: 0.0205 REMARK 3 S21: -0.1707 S22: -0.0150 S23: 0.0679 REMARK 3 S31: -0.0081 S32: -0.0341 S33: 0.0492 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -34.0179 15.0850 -14.0269 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.2064 REMARK 3 T33: 0.0432 T12: -0.1126 REMARK 3 T13: -0.1281 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 8.0103 L22: 0.4290 REMARK 3 L33: 4.4101 L12: 1.4726 REMARK 3 L13: -4.4710 L23: -1.1733 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: 1.0005 S13: 0.1277 REMARK 3 S21: -0.2723 S22: 0.2017 S23: 0.0824 REMARK 3 S31: 0.3603 S32: -0.2893 S33: -0.0515 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3889 14.2658 7.9273 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0591 REMARK 3 T33: 0.0071 T12: 0.0060 REMARK 3 T13: 0.0053 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1525 L22: 1.0804 REMARK 3 L33: 1.8932 L12: 0.2086 REMARK 3 L13: 0.0008 L23: -1.2102 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.0112 S13: -0.0133 REMARK 3 S21: -0.0993 S22: -0.0333 S23: -0.0689 REMARK 3 S31: 0.1111 S32: 0.0579 S33: 0.0707 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 60 P 72 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6093 17.4184 7.4878 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.1060 REMARK 3 T33: 0.2321 T12: 0.0093 REMARK 3 T13: -0.0294 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.0860 L22: 0.6457 REMARK 3 L33: 8.7209 L12: 0.1313 REMARK 3 L13: -1.9303 L23: 1.5784 REMARK 3 S TENSOR REMARK 3 S11: 0.2287 S12: -0.2104 S13: -0.0034 REMARK 3 S21: 0.0720 S22: 0.0629 S23: -0.2895 REMARK 3 S31: -0.1135 S32: 0.4921 S33: -0.2916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 63 Q 72 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7182 43.4545 -17.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.2159 REMARK 3 T33: 0.0823 T12: -0.0328 REMARK 3 T13: -0.0324 T23: -0.0947 REMARK 3 L TENSOR REMARK 3 L11: 0.2364 L22: 9.1468 REMARK 3 L33: 4.9554 L12: 0.0230 REMARK 3 L13: 1.0753 L23: -0.3982 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.0041 S13: -0.0950 REMARK 3 S21: -0.8507 S22: 0.3465 S23: -0.0842 REMARK 3 S31: 0.2854 S32: -0.0859 S33: -0.3941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, THE STRUCTURE WAS REFINED ALSO WITH CNS 1.2 REMARK 4 REMARK 4 3GZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-07; 21-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.2; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841; 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL; SI-111 CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; MARMOSAIC 225 MM REMARK 200 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 39.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20% PEG 8000, 8% ETHYLENE REMARK 280 GLYCOL, PH7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.54500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.54500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.26500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.54500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.26500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.54500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ASN B 8 REMARK 465 GLU B 9 REMARK 465 ILE P 51 REMARK 465 ASN P 52 REMARK 465 THR P 53 REMARK 465 THR P 54 REMARK 465 ASN P 55 REMARK 465 ALA P 56 REMARK 465 HIS P 57 REMARK 465 SER P 58 REMARK 465 THR P 59 REMARK 465 ILE Q 51 REMARK 465 ASN Q 52 REMARK 465 THR Q 53 REMARK 465 THR Q 54 REMARK 465 ASN Q 55 REMARK 465 ALA Q 56 REMARK 465 HIS Q 57 REMARK 465 SER Q 58 REMARK 465 THR Q 59 REMARK 465 SER Q 60 REMARK 465 ASN Q 61 REMARK 465 ILE Q 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 25 CA - CB - CG ANGL. DEV. = 20.1 DEGREES REMARK 500 PRO A 32 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO A 32 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 20 38.44 -73.13 REMARK 500 SER A 21 -11.98 -157.47 REMARK 500 ALA A 23 95.07 -54.95 REMARK 500 LEU A 25 -42.34 109.02 REMARK 500 ASP A 27 -35.69 61.03 REMARK 500 ILE A 28 19.39 -66.59 REMARK 500 ASN A 29 77.83 23.89 REMARK 500 ALA A 30 45.24 14.36 REMARK 500 ILE A 31 78.47 -106.74 REMARK 500 PRO A 32 122.20 -30.48 REMARK 500 ASP A 33 -98.76 0.50 REMARK 500 ASP A 34 -10.54 -47.85 REMARK 500 ASP A 66 83.06 -154.42 REMARK 500 LYS A 101 96.85 -65.45 REMARK 500 ASN A 102 -83.83 -175.57 REMARK 500 ASP A 103 135.81 -36.07 REMARK 500 ILE B 11 -92.98 -20.73 REMARK 500 THR B 13 53.01 -105.23 REMARK 500 ILE B 19 -79.12 -61.05 REMARK 500 ASP B 66 74.56 -151.88 REMARK 500 PHE B 67 -1.31 -58.36 REMARK 500 LYS B 101 13.22 5.44 REMARK 500 LYS P 71 106.32 -47.24 REMARK 500 LYS Q 71 55.44 97.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 99 GLY A 100 -136.85 REMARK 500 THR B 13 ALA B 14 144.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GYZ RELATED DB: PDB REMARK 900 IPGC APO FORM REMARK 900 RELATED ID: 3GZ2 RELATED DB: PDB REMARK 900 IPGC IN COMPLEX WITH AN IPAB PEPTIDE DBREF 3GZ1 A 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 DBREF 3GZ1 B 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 DBREF 3GZ1 P 51 72 UNP P18011 IPAB_SHIFL 51 72 DBREF 3GZ1 Q 51 72 UNP P18011 IPAB_SHIFL 51 72 SEQADV 3GZ1 GLY A 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQADV 3GZ1 GLY B 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQRES 1 A 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 A 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 A 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 A 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 A 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 A 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 A 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 A 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 A 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 A 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 A 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 A 151 GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 B 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 B 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 B 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 B 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 B 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 B 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 B 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 B 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 B 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 B 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 B 151 GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 P 22 ILE ASN THR THR ASN ALA HIS SER THR SER ASN ILE LEU SEQRES 2 P 22 ILE PRO GLU LEU LYS ALA PRO LYS SER SEQRES 1 Q 22 ILE ASN THR THR ASN ALA HIS SER THR SER ASN ILE LEU SEQRES 2 Q 22 ILE PRO GLU LEU LYS ALA PRO LYS SER HET GOL A 152 6 HET GOL A 153 6 HET GOL B 152 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *64(H2 O) HELIX 1 1 ASN A 8 ASN A 20 1 13 HELIX 2 2 PRO A 32 LYS A 49 1 18 HELIX 3 3 ARG A 51 ASP A 66 1 16 HELIX 4 4 ASN A 69 LYS A 83 1 15 HELIX 5 5 GLN A 85 GLY A 100 1 16 HELIX 6 6 TYR A 104 LEU A 117 1 14 HELIX 7 7 ALA A 119 SER A 134 1 16 HELIX 8 8 ASP A 136 GLN A 151 1 16 HELIX 9 9 ALA B 14 GLY B 22 1 9 HELIX 10 10 THR B 24 ASN B 29 1 6 HELIX 11 11 PRO B 32 LYS B 49 1 18 HELIX 12 12 ARG B 51 ASP B 66 1 16 HELIX 13 13 ASN B 69 LYS B 83 1 15 HELIX 14 14 GLN B 85 LYS B 101 1 17 HELIX 15 15 TYR B 104 LEU B 117 1 14 HELIX 16 16 ALA B 119 SER B 134 1 16 HELIX 17 17 ASP B 136 ILE B 150 1 15 SITE 1 AC1 5 TYR A 40 ASN A 69 ASP A 71 LYS Q 71 SITE 2 AC1 5 SER Q 72 SITE 1 AC2 4 GLN A 81 GLN A 112 ARG A 116 LEU Q 63 SITE 1 AC3 9 TYR B 40 ASN B 69 ASP B 71 TYR B 72 SITE 2 AC3 9 HOH B 160 LYS P 68 ALA P 69 PRO P 70 SITE 3 AC3 9 LYS P 71 CRYST1 73.310 97.090 106.530 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009387 0.00000