HEADER CHAPERONE 06-APR-09 3GZ2 TITLE CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH AN IPAB PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-151; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INVASIN IPAB; COMPND 9 CHAIN: P; COMPND 10 FRAGMENT: CHAPERONE BINDING REGIONS OF IPAB, RESIDUES 16-72; COMPND 11 SYNONYM: 62 KDA ANTIGEN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: M90T; SOURCE 5 GENE: IPGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 13 ORGANISM_TAXID: 623; SOURCE 14 STRAIN: M90T; SOURCE 15 GENE: IPAB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TETRATRICOPEPTIDE REPEAT, TPR, CHAPERONE, CHAPERONE BINDING REGION, KEYWDS 2 VIRULENCE, SECRETED, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.LOKAREDDY,M.LUNELLI,M.KOLBE REVDAT 3 01-NOV-23 3GZ2 1 REMARK SEQADV REVDAT 2 02-FEB-11 3GZ2 1 JRNL REVDAT 1 21-APR-10 3GZ2 0 JRNL AUTH R.K.LOKAREDDY,M.LUNELLI,B.EILERS,V.WOLTER,M.KOLBE JRNL TITL COMBINATION OF TWO SEPARATE BINDING DOMAINS DEFINES JRNL TITL 2 STOICHIOMETRY BETWEEN TYPE III SECRETION SYSTEM CHAPERONE JRNL TITL 3 IPGC AND TRANSLOCATOR PROTEIN IPAB JRNL REF J.BIOL.CHEM. V. 285 39965 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20937829 JRNL DOI 10.1074/JBC.M110.135616 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 15633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4540 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47000 REMARK 3 B22 (A**2) : 2.47000 REMARK 3 B33 (A**2) : -3.70000 REMARK 3 B12 (A**2) : 1.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2433 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3285 ; 1.894 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 5.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;39.774 ;25.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;19.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;21.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1861 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1467 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2355 ; 1.848 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 2.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 4.279 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7504 -35.6335 6.1594 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1327 REMARK 3 T33: 0.0840 T12: -0.0794 REMARK 3 T13: -0.0995 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.2824 L22: 2.2347 REMARK 3 L33: 5.0201 L12: -0.4125 REMARK 3 L13: 0.3631 L23: -3.2553 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: 0.0344 S13: 0.1531 REMARK 3 S21: 0.5753 S22: -0.0518 S23: -0.2495 REMARK 3 S31: -0.7411 S32: 0.0178 S33: 0.2375 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3402 -54.0934 -2.2599 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.1513 REMARK 3 T33: 0.0476 T12: -0.0302 REMARK 3 T13: 0.0225 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.3567 L22: 0.2331 REMARK 3 L33: 1.2099 L12: -0.2269 REMARK 3 L13: -0.9568 L23: -0.1619 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0745 S13: 0.0303 REMARK 3 S21: -0.0101 S22: -0.0656 S23: -0.0472 REMARK 3 S31: 0.0143 S32: 0.0491 S33: 0.0593 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1008 -32.4219 -1.7398 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.2123 REMARK 3 T33: 0.1750 T12: -0.1023 REMARK 3 T13: -0.0242 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.4223 L22: 6.9954 REMARK 3 L33: 4.3208 L12: -1.8230 REMARK 3 L13: -3.8022 L23: 1.2817 REMARK 3 S TENSOR REMARK 3 S11: 0.3058 S12: -0.0486 S13: 0.2847 REMARK 3 S21: 0.0927 S22: -0.1052 S23: -0.9825 REMARK 3 S31: -0.3798 S32: 0.0964 S33: -0.2006 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9192 -37.6203 -9.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.1755 REMARK 3 T33: 0.0203 T12: -0.0362 REMARK 3 T13: -0.0165 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.8833 L22: 0.5611 REMARK 3 L33: 0.6892 L12: -0.4008 REMARK 3 L13: 0.4216 L23: -0.0315 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.1540 S13: 0.0472 REMARK 3 S21: -0.0971 S22: -0.0524 S23: -0.0188 REMARK 3 S31: -0.0705 S32: -0.0341 S33: 0.0587 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 64 P 70 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7939 -44.1138 -14.8538 REMARK 3 T TENSOR REMARK 3 T11: 0.2758 T22: 0.1832 REMARK 3 T33: 0.2805 T12: -0.0653 REMARK 3 T13: -0.0114 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 8.4080 L22: 3.4174 REMARK 3 L33: 7.1064 L12: -4.7706 REMARK 3 L13: -0.3569 L23: 2.4435 REMARK 3 S TENSOR REMARK 3 S11: -0.4961 S12: -0.2857 S13: -1.3826 REMARK 3 S21: 0.3067 S22: 0.1931 S23: 0.8675 REMARK 3 S31: 0.1626 S32: 0.0465 S33: 0.3030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, THE STRUCTURE WAS REFINED ALSO WITH CNS 1.2 REMARK 4 REMARK 4 3GZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 35.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ADA, 1M AMMONIUM SULFATE, PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.45667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.91333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.91333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.45667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ASN B 8 REMARK 465 MET P -5 REMARK 465 GLY P -4 REMARK 465 SER P -3 REMARK 465 SER P -2 REMARK 465 HIS P -1 REMARK 465 HIS P 0 REMARK 465 HIS P 1 REMARK 465 HIS P 2 REMARK 465 HIS P 3 REMARK 465 HIS P 4 REMARK 465 SER P 5 REMARK 465 SER P 6 REMARK 465 GLY P 7 REMARK 465 LEU P 8 REMARK 465 VAL P 9 REMARK 465 PRO P 10 REMARK 465 ARG P 11 REMARK 465 GLY P 12 REMARK 465 SER P 13 REMARK 465 HIS P 14 REMARK 465 MET P 15 REMARK 465 ILE P 16 REMARK 465 LEU P 17 REMARK 465 THR P 18 REMARK 465 SER P 19 REMARK 465 THR P 20 REMARK 465 GLU P 21 REMARK 465 LEU P 22 REMARK 465 GLY P 23 REMARK 465 ASP P 24 REMARK 465 ASN P 25 REMARK 465 THR P 26 REMARK 465 ILE P 27 REMARK 465 GLN P 28 REMARK 465 ALA P 29 REMARK 465 ALA P 30 REMARK 465 ASN P 31 REMARK 465 ASP P 32 REMARK 465 ALA P 33 REMARK 465 ALA P 34 REMARK 465 ASN P 35 REMARK 465 LYS P 36 REMARK 465 LEU P 37 REMARK 465 PHE P 38 REMARK 465 SER P 39 REMARK 465 LEU P 40 REMARK 465 THR P 41 REMARK 465 ILE P 42 REMARK 465 ALA P 43 REMARK 465 ASP P 44 REMARK 465 LEU P 45 REMARK 465 THR P 46 REMARK 465 ALA P 47 REMARK 465 ASN P 48 REMARK 465 GLN P 49 REMARK 465 ASN P 50 REMARK 465 ILE P 51 REMARK 465 ASN P 52 REMARK 465 THR P 53 REMARK 465 THR P 54 REMARK 465 ASN P 55 REMARK 465 ALA P 56 REMARK 465 HIS P 57 REMARK 465 SER P 58 REMARK 465 THR P 59 REMARK 465 SER P 60 REMARK 465 ASN P 61 REMARK 465 ILE P 62 REMARK 465 LEU P 63 REMARK 465 LYS P 71 REMARK 465 SER P 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 126 CB CYS B 126 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 9 52.84 -118.92 REMARK 500 ASN A 29 63.19 60.17 REMARK 500 ALA A 119 69.91 -113.77 REMARK 500 ASP A 136 106.01 -45.86 REMARK 500 LYS A 138 -37.66 -39.85 REMARK 500 SER B 10 119.12 -37.01 REMARK 500 ILE B 11 -28.47 -29.89 REMARK 500 ILE B 28 -65.24 -26.36 REMARK 500 PRO B 32 163.38 -45.78 REMARK 500 MET B 36 -6.83 -50.46 REMARK 500 ARG B 51 66.74 -52.44 REMARK 500 ASP B 66 62.82 -169.60 REMARK 500 PHE B 67 17.74 -60.33 REMARK 500 LYS B 101 -21.25 67.96 REMARK 500 LEU B 121 -75.53 -47.05 REMARK 500 ASN B 135 -8.69 -59.78 REMARK 500 GLU B 137 -76.74 -58.33 REMARK 500 LYS B 138 -37.94 -27.96 REMARK 500 ALA P 69 -159.51 -81.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GYZ RELATED DB: PDB REMARK 900 IPGC APO FORM REMARK 900 RELATED ID: 3GZ1 RELATED DB: PDB REMARK 900 IPGC IN COMPLEX WITH AN IPAB PEPTIDE DBREF 3GZ2 A 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 DBREF 3GZ2 B 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 DBREF 3GZ2 P 16 72 UNP P18011 IPAB_SHIFL 16 72 SEQADV 3GZ2 GLY A 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQADV 3GZ2 GLY B 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQADV 3GZ2 MET P -5 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 GLY P -4 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 SER P -3 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 SER P -2 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P -1 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 0 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 1 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 2 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 3 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 4 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 SER P 5 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 SER P 6 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 GLY P 7 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 LEU P 8 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 VAL P 9 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 PRO P 10 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 ARG P 11 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 GLY P 12 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 SER P 13 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 HIS P 14 UNP P18011 EXPRESSION TAG SEQADV 3GZ2 MET P 15 UNP P18011 EXPRESSION TAG SEQRES 1 A 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 A 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 A 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 A 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 A 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 A 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 A 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 A 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 A 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 A 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 A 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 A 151 GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 B 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 B 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 B 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 B 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 B 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 B 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 B 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 B 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 B 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 B 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 B 151 GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 P 78 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 P 78 LEU VAL PRO ARG GLY SER HIS MET ILE LEU THR SER THR SEQRES 3 P 78 GLU LEU GLY ASP ASN THR ILE GLN ALA ALA ASN ASP ALA SEQRES 4 P 78 ALA ASN LYS LEU PHE SER LEU THR ILE ALA ASP LEU THR SEQRES 5 P 78 ALA ASN GLN ASN ILE ASN THR THR ASN ALA HIS SER THR SEQRES 6 P 78 SER ASN ILE LEU ILE PRO GLU LEU LYS ALA PRO LYS SER HET GOL A 152 6 HET GOL A 153 6 HET IMD A 154 5 HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 IMD C3 H5 N2 1+ FORMUL 7 HOH *12(H2 O) HELIX 1 1 SER A 10 SER A 21 1 12 HELIX 2 2 THR A 24 ASN A 29 1 6 HELIX 3 3 PRO A 32 LYS A 49 1 18 HELIX 4 4 ARG A 51 ASP A 66 1 16 HELIX 5 5 ASN A 69 GLU A 84 1 16 HELIX 6 6 GLN A 85 GLY A 100 1 16 HELIX 7 7 TYR A 104 LEU A 117 1 14 HELIX 8 8 ALA A 119 SER A 134 1 16 HELIX 9 9 ASP A 136 GLN A 151 1 16 HELIX 10 10 ILE B 11 GLY B 22 1 12 HELIX 11 11 THR B 24 ASN B 29 1 6 HELIX 12 12 ASP B 34 LYS B 49 1 16 HELIX 13 13 ARG B 51 ASP B 66 1 16 HELIX 14 14 ASN B 69 LYS B 83 1 15 HELIX 15 15 GLN B 85 LEU B 99 1 15 HELIX 16 16 TYR B 104 LEU B 117 1 14 HELIX 17 17 ALA B 119 SER B 134 1 16 HELIX 18 18 ASP B 136 GLN B 151 1 16 CISPEP 1 ILE P 64 PRO P 65 0 5.20 CISPEP 2 ALA P 69 PRO P 70 0 -19.39 SITE 1 AC1 3 ARG A 60 ARG B 51 GLU B 54 SITE 1 AC2 3 THR A 24 ILE A 64 TYR A 65 SITE 1 AC3 2 ASN A 69 ASP A 71 CRYST1 113.720 113.720 76.370 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008794 0.005077 0.000000 0.00000 SCALE2 0.000000 0.010154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013094 0.00000