HEADER LYASE 07-APR-09 3GZH TITLE CRYSTAL STRUCTURE OF PHOSPHATE-BOUND ADENYLOSUCCINATE LYASE FROM E. TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 GENE: ECS1603, PURB, Z1860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALL-HELICAL FOLD, ADENYLOSUCCINATE LYASE, STRUCTURAL GENOMICS, KEYWDS 2 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, MONTREAL-KINGSTON KEYWDS 3 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 4 06-SEP-23 3GZH 1 REMARK SEQADV REVDAT 3 13-JUL-11 3GZH 1 VERSN REVDAT 2 15-SEP-09 3GZH 1 JRNL REVDAT 1 25-AUG-09 3GZH 0 JRNL AUTH G.KOZLOV,L.NGUYEN,J.PEARSALL,K.GEHRING JRNL TITL THE STRUCTURE OF PHOSPHATE-BOUND ESCHERICHIA COLI JRNL TITL 2 ADENYLOSUCCINATE LYASE IDENTIFIES HIS171 AS A CATALYTIC JRNL TITL 3 ACID. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 857 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19724117 JRNL DOI 10.1107/S1744309109029674 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 40348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.26000 REMARK 3 B22 (A**2) : 3.22000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3839 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5221 ; 1.470 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 5.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;34.922 ;24.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;14.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.356 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2918 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1813 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2687 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 182 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 64 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2351 ; 0.792 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3795 ; 1.480 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 2.702 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 4.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22700 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM/POTASSIUM PHOSPHATE, 4% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.12800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.05200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.65800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.12800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.05200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.65800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.12800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.05200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.65800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.12800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.05200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -100.25600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -100.25600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.31600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -100.25600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 77.31600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -100.25600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 914 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 GLY A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 ASP A -13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -11 CG OD1 OD2 REMARK 470 SER A 1 OG REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 ASN A 73 OD1 ND2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 413 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 120 -5.58 67.33 REMARK 500 VAL A 142 -61.98 -120.03 REMARK 500 SER A 178 -159.09 -134.31 REMARK 500 ASN A 208 15.50 -166.64 REMARK 500 THR A 246 -141.46 -89.37 REMARK 500 TRP A 333 -132.21 50.68 REMARK 500 ARG A 335 157.36 155.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 47 O REMARK 620 2 ALA A 48 O 77.0 REMARK 620 3 HIS A 50 O 82.9 103.5 REMARK 620 4 ILE A 53 O 99.2 163.0 92.3 REMARK 620 5 VAL A 56 O 93.4 83.5 171.1 80.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 331 O REMARK 620 2 TRP A 333 O 82.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PURB_ECO57 RELATED DB: TARGETDB DBREF 3GZH A 2 456 UNP Q8X737 Q8X737_ECO57 2 456 SEQADV 3GZH MET A -25 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH GLY A -24 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH SER A -23 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH SER A -22 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -21 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -20 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -19 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -18 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -17 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -16 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -15 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH HIS A -14 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH ASP A -13 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH TYR A -12 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH ASP A -11 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH ILE A -10 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH PRO A -9 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH THR A -8 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH THR A -7 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH GLU A -6 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH ASN A -5 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH LEU A -4 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH TYR A -3 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH PHE A -2 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH GLN A -1 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH GLY A 0 UNP Q8X737 EXPRESSION TAG SEQADV 3GZH SER A 1 UNP Q8X737 EXPRESSION TAG SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS ASP SEQRES 2 A 482 TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY SEQRES 3 A 482 SER GLU LEU SER SER LEU THR ALA VAL SER PRO VAL ASP SEQRES 4 A 482 GLY ARG TYR GLY ASP LYS VAL SER ALA LEU ARG GLY ILE SEQRES 5 A 482 PHE SER GLU TYR GLY LEU LEU LYS PHE ARG VAL GLN VAL SEQRES 6 A 482 GLU VAL ARG TRP LEU GLN LYS LEU ALA ALA HIS ALA ALA SEQRES 7 A 482 ILE LYS GLU VAL PRO ALA PHE ALA ALA ASP ALA ILE GLY SEQRES 8 A 482 TYR LEU ASP ALA ILE VAL ALA ASN PHE SER GLU GLU ASP SEQRES 9 A 482 ALA ALA ARG ILE LYS THR ILE GLU ARG THR THR ASN HIS SEQRES 10 A 482 ASP VAL LYS ALA VAL GLU TYR PHE LEU LYS GLU LYS VAL SEQRES 11 A 482 ALA GLU ILE PRO GLU LEU HIS ALA VAL SER GLU PHE ILE SEQRES 12 A 482 HIS PHE ALA CYS THR SER GLU ASP ILE ASN ASN LEU SER SEQRES 13 A 482 HIS ALA LEU MET LEU LYS THR ALA ARG ASP GLU VAL ILE SEQRES 14 A 482 LEU PRO TYR TRP ARG GLN LEU ILE ASP GLY ILE LYS ASP SEQRES 15 A 482 LEU ALA VAL GLN TYR ARG ASP ILE PRO LEU LEU SER ARG SEQRES 16 A 482 THR HIS GLY GLN PRO ALA THR PRO SER THR ILE GLY LYS SEQRES 17 A 482 GLU MET ALA ASN VAL ALA TYR ARG MET GLU ARG GLN TYR SEQRES 18 A 482 ARG GLN LEU ASN GLN VAL GLU ILE LEU GLY LYS ILE ASN SEQRES 19 A 482 GLY ALA VAL GLY ASN TYR ASN ALA HIS ILE ALA ALA TYR SEQRES 20 A 482 PRO GLU VAL ASP TRP HIS GLN PHE SER GLU GLU PHE VAL SEQRES 21 A 482 THR SER LEU GLY ILE GLN TRP ASN PRO TYR THR THR GLN SEQRES 22 A 482 ILE GLU PRO HIS ASP TYR ILE ALA GLU LEU PHE ASP CYS SEQRES 23 A 482 VAL ALA ARG PHE ASN THR ILE LEU ILE ASP PHE ASP ARG SEQRES 24 A 482 ASP VAL TRP GLY TYR ILE ALA LEU ASN HIS PHE LYS GLN SEQRES 25 A 482 LYS THR ILE ALA GLY GLU ILE GLY SER SER THR MET PRO SEQRES 26 A 482 HIS LYS VAL ASN PRO ILE ASP PHE GLU ASN SER GLU GLY SEQRES 27 A 482 ASN LEU GLY LEU SER ASN ALA VAL LEU GLN HIS LEU ALA SEQRES 28 A 482 SER LYS LEU PRO VAL SER ARG TRP GLN ARG ASP LEU THR SEQRES 29 A 482 ASP SER THR VAL LEU ARG ASN LEU GLY VAL GLY ILE GLY SEQRES 30 A 482 TYR ALA LEU ILE ALA TYR GLN SER THR LEU LYS GLY VAL SEQRES 31 A 482 SER LYS LEU GLU VAL ASN ARG ASP HIS LEU LEU ASP GLU SEQRES 32 A 482 LEU ASP HIS ASN TRP GLU VAL LEU ALA GLU PRO ILE GLN SEQRES 33 A 482 THR VAL MET ARG ARG TYR GLY ILE GLU LYS PRO TYR GLU SEQRES 34 A 482 LYS LEU LYS GLU LEU THR ARG GLY LYS ARG VAL ASP ALA SEQRES 35 A 482 GLU GLY MET LYS GLN PHE ILE ASP GLY LEU ALA LEU PRO SEQRES 36 A 482 GLU GLU GLU LYS ALA ARG LEU LYS ALA MET THR PRO ALA SEQRES 37 A 482 ASN TYR ILE GLY ARG ALA ILE THR MET VAL ASP GLU LEU SEQRES 38 A 482 LYS HET NA A 501 1 HET NA A 502 1 HET PO4 A 503 5 HET PO4 A 504 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NA 2(NA 1+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *317(H2 O) HELIX 1 1 TYR A 16 ILE A 26 5 11 HELIX 2 2 SER A 28 HIS A 50 1 23 HELIX 3 3 ALA A 60 ASN A 73 1 14 HELIX 4 4 SER A 75 ASN A 90 1 16 HELIX 5 5 HIS A 91 ALA A 105 1 15 HELIX 6 6 ILE A 107 ALA A 112 1 6 HELIX 7 7 VAL A 113 ILE A 117 5 5 HELIX 8 8 THR A 122 VAL A 142 1 21 HELIX 9 9 VAL A 142 TYR A 161 1 20 HELIX 10 10 ILE A 180 VAL A 201 1 22 HELIX 11 11 TYR A 214 TYR A 221 1 8 HELIX 12 12 ASP A 225 LEU A 237 1 13 HELIX 13 13 HIS A 251 LEU A 281 1 31 HELIX 14 14 PRO A 304 LEU A 328 1 25 HELIX 15 15 LEU A 337 ARG A 344 1 8 HELIX 16 16 ASN A 345 LYS A 366 1 22 HELIX 17 17 ASN A 370 ASP A 379 1 10 HELIX 18 18 HIS A 380 VAL A 384 5 5 HELIX 19 19 LEU A 385 TYR A 396 1 12 HELIX 20 20 LYS A 400 ARG A 410 1 11 HELIX 21 21 ASP A 415 GLY A 425 1 11 HELIX 22 22 PRO A 429 ALA A 438 1 10 HELIX 23 23 ARG A 447 LEU A 455 1 9 SHEET 1 A 2 PRO A 165 THR A 170 0 SHEET 2 A 2 GLN A 173 THR A 179 -1 O SER A 178 N LEU A 166 SHEET 1 B 2 LEU A 204 GLY A 205 0 SHEET 2 B 2 GLN A 240 TRP A 241 1 O GLN A 240 N GLY A 205 SHEET 1 C 2 PHE A 284 GLN A 286 0 SHEET 2 C 2 LEU A 367 VAL A 369 -1 O GLU A 368 N LYS A 285 LINK O LEU A 47 NA NA A 501 1555 1555 2.90 LINK O ALA A 48 NA NA A 501 1555 1555 2.90 LINK O HIS A 50 NA NA A 501 1555 1555 2.48 LINK O ILE A 53 NA NA A 501 1555 1555 2.56 LINK O VAL A 56 NA NA A 501 1555 1555 2.53 LINK O SER A 331 NA NA A 502 1555 1555 2.44 LINK O TRP A 333 NA NA A 502 1555 1555 2.90 SITE 1 AC1 5 LEU A 47 ALA A 48 HIS A 50 ILE A 53 SITE 2 AC1 5 VAL A 56 SITE 1 AC2 4 ASP A 270 ASP A 274 SER A 331 TRP A 333 SITE 1 AC3 8 ARG A 15 TYR A 16 ASN A 309 SER A 340 SITE 2 AC3 8 THR A 341 ARG A 344 HOH A 669 HOH A 716 SITE 1 AC4 10 HIS A 91 THR A 122 SER A 123 GLN A 247 SITE 2 AC4 10 SER A 295 SER A 296 THR A 297 MET A 298 SITE 3 AC4 10 HOH A 774 HOH A 898 CRYST1 77.316 100.256 150.104 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006662 0.00000