HEADER TRANSCRIPTION 07-APR-09 3GZI TITLE CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR OF THE TETR FAMILY TITLE 2 (SHEW_3567) FROM SHEWANELLA LOIHICA PV-4 AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA PV-4; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 GENE: SHEW_3567, YP_001095692.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TETR FAMILY TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 06-NOV-24 3GZI 1 REMARK REVDAT 6 01-FEB-23 3GZI 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GZI 1 REMARK LINK REVDAT 4 01-NOV-17 3GZI 1 REMARK REVDAT 3 13-JUL-11 3GZI 1 VERSN REVDAT 2 28-JUL-10 3GZI 1 HEADER TITLE KEYWDS REVDAT 1 21-APR-09 3GZI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TETR FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (YP_001095692.1) FROM SHEWANELLA SP. PV-4 AT 2.05 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1220 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2352 ; 1.477 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2970 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 6.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;33.787 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;14.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1943 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 379 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1207 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 866 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 858 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.011 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.103 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.281 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 2.373 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 420 ; 0.467 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1739 ; 3.238 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 712 ; 5.407 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 613 ; 6.885 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9202 -15.0819 75.0405 REMARK 3 T TENSOR REMARK 3 T11: -0.0648 T22: -0.1091 REMARK 3 T33: -0.0486 T12: 0.0123 REMARK 3 T13: -0.0308 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.1459 L22: 0.4375 REMARK 3 L33: 0.7833 L12: 0.3079 REMARK 3 L13: -0.5228 L23: -0.2547 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0520 S13: 0.0765 REMARK 3 S21: 0.0195 S22: 0.0188 S23: 0.0123 REMARK 3 S31: 0.0025 S32: -0.0517 S33: 0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE REMARK 3 MODEL SHOWS TWO RAMACHANDAN OUTLIERS, ARG 32 AND PRO 33. THESE REMARK 3 OUTLIERS ARE SITUATED IN A REGION OF DISORDERED ELECTRON DENSITY REMARK 3 BETWEEN RESIDUES 32-38. 5. THERE IS UNIDENTIFIED DENSITY FOUND REMARK 3 NEAR THE LIGAND BINDING SITE. IT WAS MODELED AS AN UNKNOWN REMARK 3 LIGAND (UNL). REMARK 4 REMARK 4 3GZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 29.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : 0.76500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0000% ETHYLENE-GLYCOL, 5.0000% PEG REMARK 280 -3000, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.91500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.91800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.91800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -45.83600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 465 VAL A 211 REMARK 465 LYS A 212 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 ARG A 215 REMARK 465 ASP A 216 REMARK 465 GLU A 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 36 CG CD OE1 NE2 REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CE NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 ARG A 87 CD NE CZ NH1 NH2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 124 CB GLU A 124 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -54.48 -129.74 REMARK 500 ARG A 32 -148.69 -153.01 REMARK 500 PRO A 33 173.43 -34.87 REMARK 500 TYR A 34 -100.50 -98.35 REMARK 500 ALA A 35 -81.82 -92.64 REMARK 500 GLU A 89 112.56 -37.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 88 GLU A 89 -143.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 227 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379941 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GZI A 1 217 UNP A3QIY5 A3QIY5_SHELP 1 217 SEQADV 3GZI GLY A 0 UNP A3QIY5 EXPRESSION TAG SEQRES 1 A 218 GLY MSE ALA GLU ALA LYS SER ARG VAL GLY ARG PRO SER SEQRES 2 A 218 GLY ASP THR GLN ASN ARG ASP LYS LEU ILE LEU ALA ALA SEQRES 3 A 218 ARG ASN LEU PHE ILE GLU ARG PRO TYR ALA GLN VAL SER SEQRES 4 A 218 ILE ARG GLU ILE ALA SER LEU ALA GLY THR ASP PRO GLY SEQRES 5 A 218 LEU ILE ARG TYR TYR PHE GLY SER LYS GLU LYS LEU PHE SEQRES 6 A 218 SER THR MSE ILE HIS GLU THR ALA MSE PRO VAL LEU ALA SEQRES 7 A 218 GLN LEU HIS LYS ALA ARG ARG GLU THR ARG GLN GLU SER SEQRES 8 A 218 PRO ALA ALA LEU LEU GLN THR TYR TYR SER VAL MSE SER SEQRES 9 A 218 LYS HIS PRO HIS PHE PRO ARG LEU MSE LEU ARG ILE ALA SEQRES 10 A 218 GLY LEU ASP GLN SER LEU PRO GLU ASN ALA GLU VAL THR SEQRES 11 A 218 LYS ALA PHE TYR GLU VAL VAL ASN PHE GLU ASN ILE ALA SEQRES 12 A 218 ILE PHE GLN ARG LEU LYS ASP LYS ASN LEU LEU LYS ASP SEQRES 13 A 218 ASP VAL ASP ALA HIS CYS ALA GLN LEU SER PHE PHE ALA SEQRES 14 A 218 MSE MSE VAL PHE PRO PHE ILE VAL PRO GLU ASN LEU LEU SEQRES 15 A 218 GLU ARG VAL GLY ILE GLU LEU THR PRO ASP PHE LEU GLN SEQRES 16 A 218 LEU LEU ALA GLU GLN ASN THR ARG LEU LEU GLN ARG GLY SEQRES 17 A 218 LEU MSE ASP VAL LYS ASP GLU ARG ASP GLU MODRES 3GZI MSE A 67 MET SELENOMETHIONINE MODRES 3GZI MSE A 73 MET SELENOMETHIONINE MODRES 3GZI MSE A 102 MET SELENOMETHIONINE MODRES 3GZI MSE A 112 MET SELENOMETHIONINE MODRES 3GZI MSE A 169 MET SELENOMETHIONINE MODRES 3GZI MSE A 170 MET SELENOMETHIONINE MODRES 3GZI MSE A 209 MET SELENOMETHIONINE HET MSE A 67 8 HET MSE A 73 8 HET MSE A 102 8 HET MSE A 112 8 HET MSE A 169 8 HET MSE A 170 8 HET MSE A 209 8 HET UNL A 218 8 HET EDO A 219 4 HET EDO A 220 4 HET EDO A 221 4 HET EDO A 222 4 HET EDO A 223 4 HET EDO A 224 4 HET EDO A 225 4 HET EDO A 226 4 HET EDO A 227 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *128(H2 O) HELIX 1 1 SER A 12 GLU A 31 1 20 HELIX 2 2 SER A 38 GLY A 47 1 10 HELIX 3 3 GLY A 51 GLY A 58 1 8 HELIX 4 4 SER A 59 GLU A 85 1 27 HELIX 5 5 SER A 90 HIS A 105 1 16 HELIX 6 6 HIS A 107 GLY A 117 1 11 HELIX 7 7 LEU A 122 GLU A 124 5 3 HELIX 8 8 ASN A 125 VAL A 136 1 12 HELIX 9 9 ASN A 137 GLU A 139 5 3 HELIX 10 10 ALA A 142 LYS A 150 1 9 HELIX 11 11 ASP A 158 VAL A 176 1 19 HELIX 12 12 PRO A 177 VAL A 184 1 8 HELIX 13 13 THR A 189 MSE A 209 1 21 LINK C THR A 66 N MSE A 67 1555 1555 1.32 LINK C MSE A 67 N ILE A 68 1555 1555 1.33 LINK C ALA A 72 N MSE A 73 1555 1555 1.35 LINK C MSE A 73 N PRO A 74 1555 1555 1.35 LINK C VAL A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N SER A 103 1555 1555 1.34 LINK C LEU A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N LEU A 113 1555 1555 1.33 LINK C ALA A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N VAL A 171 1555 1555 1.31 LINK C LEU A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N ASP A 210 1555 1555 1.34 SITE 1 AC1 10 ARG A 83 TYR A 98 PHE A 138 GLU A 139 SITE 2 AC1 10 ASN A 140 GLN A 163 PHE A 167 MSE A 170 SITE 3 AC1 10 VAL A 171 HOH A 335 SITE 1 AC2 5 TYR A 56 PHE A 57 LYS A 62 GLU A 182 SITE 2 AC2 5 HOH A 347 SITE 1 AC3 3 GLN A 96 SER A 100 PRO A 190 SITE 1 AC4 3 MSE A 73 GLN A 120 TYR A 133 SITE 1 AC5 7 GLU A 61 HIS A 80 LYS A 81 ARG A 84 SITE 2 AC5 7 PRO A 123 GLU A 124 HOH A 342 SITE 1 AC6 3 LEU A 76 HIS A 80 HOH A 318 SITE 1 AC7 4 MSE A 73 PRO A 74 ALA A 126 HOH A 352 SITE 1 AC8 4 SER A 38 ILE A 39 ARG A 40 HOH A 268 SITE 1 AC9 5 TYR A 34 ALA A 35 GLU A 124 ASN A 125 SITE 2 AC9 5 VAL A 128 SITE 1 BC1 4 ILE A 30 THR A 71 HOH A 229 HOH A 272 CRYST1 77.830 45.836 68.694 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014557 0.00000