HEADER UNKNOWN FUNCTION 07-APR-09 3GZR TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN WITH A CYSTATIN-LIKE TITLE 2 FOLD (CC_2572) FROM CAULOBACTER VIBRIOIDES AT 1.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN WITH A NTF2-LIKE FOLD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_COMMON: CAULOBACTER VIBRIOIDES; SOURCE 4 ORGANISM_TAXID: 155892; SOURCE 5 GENE: CC_2572, NP_421374.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NTF2-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3GZR 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GZR 1 REMARK LINK REVDAT 4 25-OCT-17 3GZR 1 REMARK REVDAT 3 13-JUL-11 3GZR 1 VERSN REVDAT 2 28-JUL-10 3GZR 1 HEADER TITLE KEYWDS REVDAT 1 21-APR-09 3GZR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DOMAIN OF UNKNOWN FUNCTION WITH A JRNL TITL 2 NTF2-LIKE FOLD (NP_421374.1) FROM CAULOBACTER CRESCENTUS AT JRNL TITL 3 1.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 69112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2508 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1648 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3458 ; 1.680 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4009 ; 1.413 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;32.346 ;23.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;11.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;11.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2844 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 0.778 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 595 ; 0.258 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2440 ; 1.317 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1014 ; 2.110 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 995 ; 3.265 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0390 51.7020 13.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.0068 REMARK 3 T33: 0.0301 T12: -0.0003 REMARK 3 T13: 0.0043 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.4693 L22: 0.6355 REMARK 3 L33: 0.9781 L12: 0.0598 REMARK 3 L13: -0.3099 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0081 S13: 0.0220 REMARK 3 S21: -0.0325 S22: -0.0090 S23: -0.0595 REMARK 3 S31: -0.0455 S32: 0.0549 S33: 0.0179 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3640 34.5460 14.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0057 REMARK 3 T33: 0.0357 T12: -0.0027 REMARK 3 T13: 0.0240 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.6489 L22: 0.4313 REMARK 3 L33: 0.9734 L12: 0.0315 REMARK 3 L13: -0.3453 L23: 0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.0254 S13: -0.0693 REMARK 3 S21: -0.0156 S22: -0.0152 S23: -0.0060 REMARK 3 S31: 0.1736 S32: -0.0337 S33: 0.0976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. GLYCEROL REMARK 3 (GOL) AND SULFATE (SO4) MOLECULES FROM THE CRYSTALLIZATION / REMARK 3 CRYOPROTECTION SOLUTIONS ARE MODELED. 5. TWO UNKNOWN LIGAND REMARK 3 MOLECULES (UNL), ONE OF WHICH RESEMBLES BENZOIC ACID, WERE REMARK 3 MODELED IN EACH CHAIN. REMARK 4 REMARK 4 3GZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97833 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.682 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M (NH4)2SO4, 0.1M CITRATE PH REMARK 280 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.93000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.46500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.69750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.23250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.16250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY INDICATES THE REMARK 300 DIMER IS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 173 REMARK 465 ALA A 174 REMARK 465 GLY B 0 REMARK 465 LYS B 172 REMARK 465 PRO B 173 REMARK 465 ALA B 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CD CE NZ REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 ARG B 170 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 89 -98.56 -113.94 REMARK 500 THR B 89 -100.11 -116.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396244 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (RESIDUE 30-174) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GZR A 30 174 UNP Q9A585 Q9A585_CAUCR 30 174 DBREF 3GZR B 30 174 UNP Q9A585 Q9A585_CAUCR 30 174 SEQADV 3GZR GLY A 0 UNP Q9A585 EXPRESSION TAG SEQADV 3GZR GLY B 0 UNP Q9A585 EXPRESSION TAG SEQRES 1 A 146 GLY GLY GLU GLY THR ASP ALA ILE GLN ALA LEU ILE GLN SEQRES 2 A 146 ALA TYR PHE THR ALA TRP ASN THR ASN ALA PRO GLU ARG SEQRES 3 A 146 PHE ALA GLU ILE PHE TRP PRO ASP GLY SER TRP VAL ASN SEQRES 4 A 146 VAL VAL GLY MSE HIS TRP ARG GLY ARG ASP GLN ILE VAL SEQRES 5 A 146 PHE ALA HIS THR ALA PHE LEU LYS THR ILE PHE LYS ASP SEQRES 6 A 146 CYS LYS GLN GLU LEU VAL THR ILE GLU ALA ARG THR ILE SEQRES 7 A 146 ALA PRO GLY SER ALA LEU ALA VAL VAL THR LEU ILE GLN SEQRES 8 A 146 ASP ALA TYR VAL THR PRO ASP GLY ARG GLN MSE PRO ARG SEQRES 9 A 146 ALA HIS ASP ARG LEU THR LEU LEU ALA VAL GLU ARG GLU SEQRES 10 A 146 GLY VAL TRP ARG PHE ILE HIS GLY HIS ASN THR ILE VAL SEQRES 11 A 146 ASN PRO ASP ALA ALA ASN ASN ASP PRO VAL LEU ARG MSE SEQRES 12 A 146 LYS PRO ALA SEQRES 1 B 146 GLY GLY GLU GLY THR ASP ALA ILE GLN ALA LEU ILE GLN SEQRES 2 B 146 ALA TYR PHE THR ALA TRP ASN THR ASN ALA PRO GLU ARG SEQRES 3 B 146 PHE ALA GLU ILE PHE TRP PRO ASP GLY SER TRP VAL ASN SEQRES 4 B 146 VAL VAL GLY MSE HIS TRP ARG GLY ARG ASP GLN ILE VAL SEQRES 5 B 146 PHE ALA HIS THR ALA PHE LEU LYS THR ILE PHE LYS ASP SEQRES 6 B 146 CYS LYS GLN GLU LEU VAL THR ILE GLU ALA ARG THR ILE SEQRES 7 B 146 ALA PRO GLY SER ALA LEU ALA VAL VAL THR LEU ILE GLN SEQRES 8 B 146 ASP ALA TYR VAL THR PRO ASP GLY ARG GLN MSE PRO ARG SEQRES 9 B 146 ALA HIS ASP ARG LEU THR LEU LEU ALA VAL GLU ARG GLU SEQRES 10 B 146 GLY VAL TRP ARG PHE ILE HIS GLY HIS ASN THR ILE VAL SEQRES 11 B 146 ASN PRO ASP ALA ALA ASN ASN ASP PRO VAL LEU ARG MSE SEQRES 12 B 146 LYS PRO ALA MODRES 3GZR MSE A 71 MET SELENOMETHIONINE MODRES 3GZR MSE A 130 MET SELENOMETHIONINE MODRES 3GZR MSE A 171 MET SELENOMETHIONINE MODRES 3GZR MSE B 71 MET SELENOMETHIONINE MODRES 3GZR MSE B 130 MET SELENOMETHIONINE MODRES 3GZR MSE B 171 MET SELENOMETHIONINE HET MSE A 71 8 HET MSE A 130 8 HET MSE A 171 13 HET MSE B 71 8 HET MSE B 130 8 HET MSE B 171 8 HET UNL A 200 9 HET UNL A 201 3 HET SO4 A 1 5 HET SO4 A 3 5 HET SO4 A 4 5 HET GOL A 6 12 HET UNL B 200 9 HET UNL B 201 3 HET SO4 B 2 5 HET SO4 B 5 5 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 SO4 5(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 13 HOH *468(H2 O) HELIX 1 1 GLY A 30 THR A 49 1 20 HELIX 2 2 ALA A 51 GLU A 57 5 7 HELIX 3 3 GLY A 75 THR A 89 1 15 HELIX 4 4 ALA A 162 MSE A 171 5 10 HELIX 5 5 GLY B 30 THR B 49 1 20 HELIX 6 6 ALA B 51 GLU B 57 5 7 HELIX 7 7 GLY B 75 THR B 89 1 15 HELIX 8 8 ALA B 162 MSE B 171 5 10 SHEET 1 A 6 HIS A 72 ARG A 74 0 SHEET 2 A 6 PHE A 59 VAL A 66 -1 N TRP A 65 O TRP A 73 SHEET 3 A 6 VAL A 147 ILE A 157 1 O PHE A 150 N TRP A 60 SHEET 4 A 6 ALA A 133 ARG A 144 -1 N THR A 138 O HIS A 154 SHEET 5 A 6 SER A 110 GLN A 119 -1 N VAL A 115 O LEU A 137 SHEET 6 A 6 GLN A 96 ALA A 107 -1 N ARG A 104 O LEU A 112 SHEET 1 B 2 TYR A 122 VAL A 123 0 SHEET 2 B 2 GLN A 129 MSE A 130 -1 O MSE A 130 N TYR A 122 SHEET 1 C 6 HIS B 72 ARG B 74 0 SHEET 2 C 6 PHE B 59 VAL B 66 -1 N TRP B 65 O TRP B 73 SHEET 3 C 6 VAL B 147 ILE B 157 1 O PHE B 150 N TRP B 60 SHEET 4 C 6 ALA B 133 ARG B 144 -1 N THR B 138 O HIS B 154 SHEET 5 C 6 SER B 110 GLN B 119 -1 N VAL B 115 O LEU B 137 SHEET 6 C 6 GLN B 96 ALA B 107 -1 N GLU B 97 O ILE B 118 SHEET 1 D 2 TYR B 122 VAL B 123 0 SHEET 2 D 2 GLN B 129 MSE B 130 -1 O MSE B 130 N TYR B 122 LINK C GLY A 70 N MSE A 71 1555 1555 1.34 LINK C MSE A 71 N HIS A 72 1555 1555 1.33 LINK C GLN A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N PRO A 131 1555 1555 1.35 LINK C ARG A 170 N MSE A 171 1555 1555 1.34 LINK C MSE A 171 N LYS A 172 1555 1555 1.34 LINK C GLY B 70 N MSE B 71 1555 1555 1.34 LINK C MSE B 71 N HIS B 72 1555 1555 1.32 LINK C GLN B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N PRO B 131 1555 1555 1.34 LINK C ARG B 170 N MSE B 171 1555 1555 1.34 SITE 1 AC1 11 SO4 A 4 ASN A 67 VAL A 68 PHE A 86 SITE 2 AC1 11 PHE A 91 TYR A 122 THR A 124 PRO A 125 SITE 3 AC1 11 ARG A 128 ALA B 162 ASN B 165 SITE 1 AC2 7 TRP A 65 ASN A 67 VAL A 68 ASN A 155 SITE 2 AC2 7 HOH A 321 HOH A 428 HOH A 494 SITE 1 AC3 9 PRO A 61 ARG A 76 ARG A 149 ARG A 170 SITE 2 AC3 9 HOH A 206 HOH A 373 HOH A 395 HOH A 399 SITE 3 AC3 9 HOH A 493 SITE 1 AC4 9 HOH A 15 ARG A 136 HOH A 214 HOH A 302 SITE 2 AC4 9 HOH A 441 HOH A 471 HOH A 491 ARG B 74 SITE 3 AC4 9 HOH B 235 SITE 1 AC5 9 THR A 124 PRO A 125 ASP A 126 ARG A 128 SITE 2 AC5 9 UNL A 200 HOH A 421 ASP B 161 ALA B 162 SITE 3 AC5 9 ASN B 165 SITE 1 AC6 8 GLY A 30 GLU A 31 GLY A 32 THR A 33 SITE 2 AC6 8 ARG A 104 THR A 105 HOH A 385 HOH A 430 SITE 1 AC7 11 ALA A 162 ASN B 67 VAL B 68 VAL B 69 SITE 2 AC7 11 MSE B 71 PHE B 86 TYR B 122 THR B 124 SITE 3 AC7 11 PRO B 125 ARG B 128 HOH B 397 SITE 1 AC8 7 TRP B 65 ASN B 67 VAL B 68 ASN B 155 SITE 2 AC8 7 HOH B 293 HOH B 379 HOH B 468 SITE 1 AC9 6 ARG A 74 HOH A 308 ARG B 136 HOH B 204 SITE 2 AC9 6 HOH B 205 HOH B 259 SITE 1 BC1 5 PRO B 61 ARG B 76 ARG B 149 HOH B 264 SITE 2 BC1 5 HOH B 267 CRYST1 71.825 71.825 121.395 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013923 0.008038 0.000000 0.00000 SCALE2 0.000000 0.016077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008238 0.00000