HEADER HYDROLASE 08-APR-09 3H08 TITLE CRYSTAL STRUCTURE OF THE RIBONUCLEASE H1 FROM CHLOROBIUM TEPIDUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNH (RIBONUCLEASE H); COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.26.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROBACULUM TEPIDUM; SOURCE 3 ORGANISM_TAXID: 1097; SOURCE 4 GENE: CT1612, RNH, RNHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RNASE H, ENDONUCLEASE, HYDROLASE, MAGNESIUM, METAL-BINDING, NUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR K.RATCLIFF,J.CORN,S.MARQUSEE REVDAT 5 21-FEB-24 3H08 1 REMARK REVDAT 4 13-OCT-21 3H08 1 REMARK SEQADV LINK REVDAT 3 07-JUL-09 3H08 1 JRNL REVDAT 2 19-MAY-09 3H08 1 JRNL REVDAT 1 12-MAY-09 3H08 0 JRNL AUTH K.RATCLIFF,J.CORN,S.MARQUSEE JRNL TITL STRUCTURE, STABILITY, AND FOLDING OF RIBONUCLEASE H1 FROM JRNL TITL 2 THE MODERATELY THERMOPHILIC CHLOROBIUM TEPIDUM: COMPARISON JRNL TITL 3 WITH THERMOPHILIC AND MESOPHILIC HOMOLOGUES. JRNL REF BIOCHEMISTRY V. 48 5890 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19408959 JRNL DOI 10.1021/BI900305P REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 33439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.1220 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : -1.07000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : -0.57000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2324 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2118 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3145 ; 1.320 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4948 ; 0.715 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;38.664 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;13.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2569 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 476 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2146 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1133 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1407 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.225 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.187 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.211 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 99 ; 0.294 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1828 ; 1.677 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 597 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2288 ; 2.001 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1077 ; 3.259 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 856 ; 4.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5442 ; 1.550 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 220 ; 8.707 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4393 ; 2.442 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6594 18.4417 -26.8441 REMARK 3 T TENSOR REMARK 3 T11: -0.1464 T22: -0.1035 REMARK 3 T33: -0.0608 T12: 0.0167 REMARK 3 T13: -0.0022 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 4.4067 L22: 1.3884 REMARK 3 L33: 3.8148 L12: 0.2929 REMARK 3 L13: 0.7886 L23: -0.2770 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.2081 S13: 0.2377 REMARK 3 S21: -0.0045 S22: 0.0563 S23: 0.0092 REMARK 3 S31: -0.0778 S32: 0.0204 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9177 13.8204 -33.9048 REMARK 3 T TENSOR REMARK 3 T11: -0.1585 T22: -0.0730 REMARK 3 T33: -0.0896 T12: -0.0286 REMARK 3 T13: -0.0088 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 13.9462 L22: 8.2438 REMARK 3 L33: 3.9164 L12: -8.0680 REMARK 3 L13: -4.8427 L23: 2.5199 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.1615 S13: -0.3892 REMARK 3 S21: -0.0151 S22: -0.0064 S23: 0.3968 REMARK 3 S31: 0.1768 S32: -0.4283 S33: 0.0994 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6288 2.0025 -21.3633 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: -0.0815 REMARK 3 T33: -0.0271 T12: -0.0205 REMARK 3 T13: 0.0372 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 3.0932 L22: 1.1492 REMARK 3 L33: 14.2017 L12: 1.1420 REMARK 3 L13: -4.8376 L23: -0.9050 REMARK 3 S TENSOR REMARK 3 S11: -0.2995 S12: -0.1149 S13: -0.3372 REMARK 3 S21: 0.1274 S22: -0.0418 S23: -0.1166 REMARK 3 S31: 0.9034 S32: -0.4549 S33: 0.3413 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3462 10.0066 -18.0204 REMARK 3 T TENSOR REMARK 3 T11: -0.0855 T22: 0.0472 REMARK 3 T33: -0.0694 T12: 0.0004 REMARK 3 T13: 0.0431 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 7.9163 L22: 3.2235 REMARK 3 L33: 8.5621 L12: -2.1062 REMARK 3 L13: 5.0280 L23: -4.4422 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: -0.6903 S13: -0.2069 REMARK 3 S21: 0.1145 S22: -0.0022 S23: 0.2060 REMARK 3 S31: 0.3275 S32: -0.3580 S33: -0.1300 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2709 8.2544 -33.4507 REMARK 3 T TENSOR REMARK 3 T11: -0.0684 T22: -0.1180 REMARK 3 T33: -0.0630 T12: -0.0376 REMARK 3 T13: 0.0100 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 26.9641 L22: 7.4038 REMARK 3 L33: 6.2186 L12: -9.0854 REMARK 3 L13: -6.0713 L23: 1.2359 REMARK 3 S TENSOR REMARK 3 S11: -0.2689 S12: 0.6043 S13: -0.6890 REMARK 3 S21: -0.1870 S22: -0.0160 S23: 0.1510 REMARK 3 S31: 0.4846 S32: -0.1614 S33: 0.2849 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3208 19.1893 -30.9453 REMARK 3 T TENSOR REMARK 3 T11: -0.1532 T22: 0.0098 REMARK 3 T33: 0.0089 T12: 0.0132 REMARK 3 T13: 0.0371 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.1215 L22: 4.0643 REMARK 3 L33: 14.4149 L12: 2.8146 REMARK 3 L13: 4.3571 L23: 2.5145 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.2874 S13: 0.1933 REMARK 3 S21: -0.1554 S22: 0.3215 S23: -0.3035 REMARK 3 S31: -0.4201 S32: 0.4636 S33: -0.2643 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5298 -5.2634 7.0869 REMARK 3 T TENSOR REMARK 3 T11: -0.1069 T22: -0.1469 REMARK 3 T33: -0.0923 T12: 0.0183 REMARK 3 T13: 0.0327 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.9152 L22: 5.2828 REMARK 3 L33: 3.8035 L12: 0.1934 REMARK 3 L13: 0.7067 L23: -0.8657 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.0313 S13: -0.0309 REMARK 3 S21: -0.1765 S22: 0.0193 S23: -0.1212 REMARK 3 S31: -0.0603 S32: 0.0620 S33: -0.0489 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5833 -13.4572 14.0840 REMARK 3 T TENSOR REMARK 3 T11: -0.0835 T22: -0.1210 REMARK 3 T33: -0.0745 T12: -0.0509 REMARK 3 T13: -0.0245 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 12.0126 L22: 24.6162 REMARK 3 L33: 4.5408 L12: -14.1028 REMARK 3 L13: -0.2013 L23: 3.1315 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: -0.2639 S13: -0.2342 REMARK 3 S21: 0.0487 S22: 0.0220 S23: 0.3528 REMARK 3 S31: 0.5031 S32: -0.3389 S33: -0.1640 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7479 -13.4314 -0.3492 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.0196 REMARK 3 T33: -0.0229 T12: -0.0067 REMARK 3 T13: -0.0712 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.8785 L22: 3.2910 REMARK 3 L33: 5.5888 L12: 1.2820 REMARK 3 L13: 0.7552 L23: 1.9321 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0103 S13: 0.0064 REMARK 3 S21: -0.4635 S22: -0.1668 S23: 0.4126 REMARK 3 S31: 0.1162 S32: -0.8902 S33: 0.1996 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3200 -10.2635 14.0368 REMARK 3 T TENSOR REMARK 3 T11: -0.0959 T22: -0.0006 REMARK 3 T33: -0.0052 T12: -0.0741 REMARK 3 T13: -0.0137 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 11.3656 L22: 30.7329 REMARK 3 L33: 6.0412 L12: -14.5889 REMARK 3 L13: -3.0009 L23: 6.8292 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: -0.6084 S13: -0.0176 REMARK 3 S21: 0.9184 S22: 0.0261 S23: 0.5889 REMARK 3 S31: 0.1521 S32: -0.4515 S33: 0.0658 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 125 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2510 4.5893 11.3237 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: -0.1795 REMARK 3 T33: -0.0690 T12: 0.0226 REMARK 3 T13: 0.0464 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.2828 L22: 4.5717 REMARK 3 L33: 18.6971 L12: 1.3393 REMARK 3 L13: -1.5287 L23: -4.9651 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.1096 S13: 0.2811 REMARK 3 S21: 0.0297 S22: 0.0258 S23: -0.0097 REMARK 3 S31: -0.5304 S32: -0.0690 S33: -0.1952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-05; 12-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; ALS REMARK 200 BEAMLINE : BL11-1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158; 0.9794 REMARK 200 MONOCHROMATOR : SI(111); SI 111 KHOZU DOUBLE REMARK 200 FLAT CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; ADSC REMARK 200 QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09300 REMARK 200 FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M SODIUM HEPES, 10% REMARK 280 ISPROPANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K. 26% PEG 4000, 0.2M AMMONIUM ACETATE, 0.1M SODIUM ACETATE, REMARK 280 PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 93 REMARK 465 ALA A 94 REMARK 465 ALA A 95 REMARK 465 LYS A 96 REMARK 465 HIS A 125 REMARK 465 SER A 146 REMARK 465 MET B 1 REMARK 465 ALA B 94 REMARK 465 HIS B 125 REMARK 465 SER B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASN B 145 O HOH B 221 1.71 REMARK 500 NZ LYS B 33 O HOH B 275 1.93 REMARK 500 N GLY B 81 O HOH B 297 2.14 REMARK 500 OE1 GLU B 107 O HOH B 299 2.16 REMARK 500 OE2 GLU B 2 O HOH B 256 2.17 REMARK 500 OH TYR B 8 O HOH B 246 2.18 REMARK 500 O MET B 78 O HOH B 297 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 2 O HOH B 199 1545 1.90 REMARK 500 NZ LYS A 33 OE1 GLU A 80 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 8 CG TYR B 8 CD1 -0.095 REMARK 500 GLU B 48 CG GLU B 48 CD 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 92 THR B 93 -140.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 DBREF 3H08 A 1 146 UNP Q93SU7 Q93SU7_CHLTE 1 146 DBREF 3H08 B 1 146 UNP Q93SU7 Q93SU7_CHLTE 1 146 SEQADV 3H08 ALA A 13 UNP Q93SU7 CYS 13 ENGINEERED MUTATION SEQADV 3H08 ALA A 63 UNP Q93SU7 CYS 63 ENGINEERED MUTATION SEQADV 3H08 ALA A 134 UNP Q93SU7 CYS 134 ENGINEERED MUTATION SEQADV 3H08 ALA B 13 UNP Q93SU7 CYS 13 ENGINEERED MUTATION SEQADV 3H08 ALA B 63 UNP Q93SU7 CYS 63 ENGINEERED MUTATION SEQADV 3H08 ALA B 134 UNP Q93SU7 CYS 134 ENGINEERED MUTATION SEQRES 1 A 146 MET GLU LYS THR ILE THR ILE TYR THR ASP GLY ALA ALA SEQRES 2 A 146 SER GLY ASN PRO GLY LYS GLY GLY TRP GLY ALA LEU LEU SEQRES 3 A 146 MET TYR GLY SER SER ARG LYS GLU ILE SER GLY TYR ASP SEQRES 4 A 146 PRO ALA THR THR ASN ASN ARG MET GLU LEU MET ALA ALA SEQRES 5 A 146 ILE LYS GLY LEU GLU ALA LEU LYS GLU PRO ALA ARG VAL SEQRES 6 A 146 GLN LEU TYR SER ASP SER ALA TYR LEU VAL ASN ALA MET SEQRES 7 A 146 ASN GLU GLY TRP LEU LYS ARG TRP VAL LYS ASN GLY TRP SEQRES 8 A 146 LYS THR ALA ALA LYS LYS PRO VAL GLU ASN ILE ASP LEU SEQRES 9 A 146 TRP GLN GLU ILE LEU LYS LEU THR THR LEU HIS ARG VAL SEQRES 10 A 146 THR PHE HIS LYS VAL LYS GLY HIS SER ASP ASN PRO TYR SEQRES 11 A 146 ASN SER ARG ALA ASP GLU LEU ALA ARG LEU ALA ILE LYS SEQRES 12 A 146 GLU ASN SER SEQRES 1 B 146 MET GLU LYS THR ILE THR ILE TYR THR ASP GLY ALA ALA SEQRES 2 B 146 SER GLY ASN PRO GLY LYS GLY GLY TRP GLY ALA LEU LEU SEQRES 3 B 146 MET TYR GLY SER SER ARG LYS GLU ILE SER GLY TYR ASP SEQRES 4 B 146 PRO ALA THR THR ASN ASN ARG MET GLU LEU MET ALA ALA SEQRES 5 B 146 ILE LYS GLY LEU GLU ALA LEU LYS GLU PRO ALA ARG VAL SEQRES 6 B 146 GLN LEU TYR SER ASP SER ALA TYR LEU VAL ASN ALA MET SEQRES 7 B 146 ASN GLU GLY TRP LEU LYS ARG TRP VAL LYS ASN GLY TRP SEQRES 8 B 146 LYS THR ALA ALA LYS LYS PRO VAL GLU ASN ILE ASP LEU SEQRES 9 B 146 TRP GLN GLU ILE LEU LYS LEU THR THR LEU HIS ARG VAL SEQRES 10 B 146 THR PHE HIS LYS VAL LYS GLY HIS SER ASP ASN PRO TYR SEQRES 11 B 146 ASN SER ARG ALA ASP GLU LEU ALA ARG LEU ALA ILE LYS SEQRES 12 B 146 GLU ASN SER HET MG A 501 1 HET MG B 501 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *218(H2 O) HELIX 1 1 THR A 43 ALA A 58 1 16 HELIX 2 2 SER A 71 GLU A 80 1 10 HELIX 3 3 GLY A 81 ASN A 89 1 9 HELIX 4 4 ASN A 101 HIS A 115 1 15 HELIX 5 5 ASN A 128 ASN A 145 1 18 HELIX 6 6 THR B 43 ALA B 58 1 16 HELIX 7 7 SER B 71 GLU B 80 1 10 HELIX 8 8 GLY B 81 ASN B 89 1 9 HELIX 9 9 ASN B 101 HIS B 115 1 15 HELIX 10 10 ASN B 128 ASN B 145 1 18 SHEET 1 A 5 SER A 31 THR A 42 0 SHEET 2 A 5 GLY A 18 TYR A 28 -1 N LEU A 26 O LYS A 33 SHEET 3 A 5 THR A 4 ALA A 13 -1 N THR A 6 O MET A 27 SHEET 4 A 5 ARG A 64 SER A 69 1 O TYR A 68 N ILE A 7 SHEET 5 A 5 ARG A 116 LYS A 121 1 O HIS A 120 N LEU A 67 SHEET 1 B 5 SER B 31 THR B 42 0 SHEET 2 B 5 GLY B 18 TYR B 28 -1 N LEU B 26 O LYS B 33 SHEET 3 B 5 THR B 4 ALA B 13 -1 N THR B 6 O MET B 27 SHEET 4 B 5 ARG B 64 SER B 69 1 O TYR B 68 N ILE B 7 SHEET 5 B 5 ARG B 116 LYS B 121 1 O THR B 118 N LEU B 67 LINK O HOH A 212 MG MG A 501 1555 1555 1.91 CISPEP 1 ASN A 16 PRO A 17 0 1.66 CISPEP 2 ASN B 16 PRO B 17 0 3.14 SITE 1 AC1 7 ASP A 10 GLY A 11 GLU A 48 SER A 69 SITE 2 AC1 7 HOH A 147 HOH A 173 HOH A 212 SITE 1 AC2 7 ASP B 10 GLY B 11 GLU B 48 ASP B 70 SITE 2 AC2 7 HOH B 147 HOH B 181 HOH B 196 CRYST1 33.457 33.388 66.072 100.38 99.43 90.82 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029889 0.000428 0.005132 0.00000 SCALE2 0.000000 0.029954 0.005640 0.00000 SCALE3 0.000000 0.000000 0.015612 0.00000